Wall clock time and date at job start Fri Apr 10 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47006 * 2 1 4 4 C 1.53000 * 109.46732 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47344 * 60.00249 * 4 3 2 6 6 C 1.52999 * 109.47676 * 299.99879 * 4 3 2 7 7 C 1.52997 * 109.47036 * 300.00559 * 6 4 3 8 8 C 1.50702 * 109.47056 * 180.02562 * 4 3 2 9 9 O 1.21283 * 119.99820 * 0.02562 * 8 4 3 10 10 N 1.34772 * 120.00172 * 180.02562 * 8 4 3 11 11 C 1.46504 * 120.00088 * 179.97438 * 10 8 4 12 12 C 1.53000 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.53037 * 109.46576 * 295.02755 * 12 11 10 14 14 C 1.53186 * 109.31611 * 178.60218 * 13 12 11 15 15 N 1.46922 * 108.76731 * 54.65601 * 14 13 12 16 16 C 1.36942 * 120.63125 * 126.40299 * 15 14 13 17 17 H 1.07993 * 119.99817 * 332.61523 * 16 15 14 18 18 C 1.38805 * 119.99764 * 152.61194 * 16 15 14 19 19 N 1.31620 * 120.00096 * 159.34859 * 18 16 15 20 20 Si 1.86804 * 120.00462 * 339.34496 * 18 16 15 21 21 H 1.48493 * 109.47200 * 92.94133 * 20 18 16 22 22 H 1.48492 * 109.47380 * 212.94961 * 20 18 16 23 23 H 1.48508 * 109.46726 * 332.94523 * 20 18 16 24 24 C 1.46925 * 118.73948 * 306.38866 * 15 14 13 25 25 C 1.53044 * 109.45878 * 174.97228 * 12 11 10 26 26 H 1.09007 * 109.47268 * 59.99788 * 1 2 3 27 27 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47374 * 299.99989 * 1 2 3 29 29 H 1.09003 * 109.46890 * 239.99900 * 2 1 3 30 30 H 1.09004 * 109.46548 * 120.00173 * 2 1 3 31 31 H 1.09003 * 109.47377 * 60.00198 * 3 2 1 32 32 H 1.08994 * 109.47409 * 299.99559 * 3 2 1 33 33 H 1.09007 * 109.47257 * 59.99619 * 5 4 3 34 34 H 1.08995 * 109.47455 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47112 * 300.00359 * 5 4 3 36 36 H 1.09009 * 109.46645 * 59.99927 * 6 4 3 37 37 H 1.08996 * 109.47585 * 180.02562 * 6 4 3 38 38 H 1.08998 * 109.47327 * 179.97438 * 7 6 4 39 39 H 1.09009 * 109.46888 * 299.99220 * 7 6 4 40 40 H 1.09002 * 109.47735 * 59.99287 * 7 6 4 41 41 H 0.96999 * 120.00390 * 359.97438 * 10 8 4 42 42 H 1.08994 * 109.47399 * 299.99809 * 11 10 8 43 43 H 1.09003 * 109.47147 * 60.00301 * 11 10 8 44 44 H 1.09002 * 109.45978 * 55.00643 * 12 11 10 45 45 H 1.08999 * 109.49900 * 298.57078 * 13 12 11 46 46 H 1.09004 * 109.49184 * 58.66026 * 13 12 11 47 47 H 1.08999 * 109.59987 * 294.87066 * 14 13 12 48 48 H 1.09003 * 109.70396 * 174.50790 * 14 13 12 49 49 H 0.97001 * 120.00092 * 179.97438 * 19 18 16 50 50 H 1.09003 * 109.58261 * 293.81859 * 24 15 14 51 51 H 1.08999 * 109.70669 * 173.46310 * 24 15 14 52 52 H 1.09000 * 109.50251 * 301.33924 * 25 12 11 53 53 H 1.09003 * 109.49450 * 61.43812 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0805 0.7210 -1.2483 6 6 4.0795 0.7214 1.2502 7 6 3.5690 1.4427 2.4991 8 6 4.0723 2.8632 0.0013 9 8 3.2842 3.7851 0.0017 10 7 5.3974 3.1095 0.0014 11 6 5.8857 4.4907 0.0014 12 6 7.4157 4.4906 0.0022 13 6 7.9250 3.8804 1.3100 14 6 9.4565 3.8500 1.2923 15 7 9.9532 5.2069 1.0264 16 6 10.8613 5.7945 1.8661 17 1 10.8973 5.5096 2.9072 18 6 11.7357 6.7564 1.3792 19 7 12.3120 7.6015 2.2074 20 14 12.0946 6.8513 -0.4516 21 1 11.1663 7.8198 -1.0884 22 1 13.4953 7.2985 -0.6589 23 1 11.9073 5.5109 -1.0629 24 6 9.4572 5.9212 -0.1579 25 6 7.9257 5.9281 -0.1242 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7175 1.2347 -2.1385 34 1 5.1704 0.7213 -1.2480 35 1 3.7171 -0.3066 -1.2483 36 1 3.7161 -0.3064 1.2502 37 1 5.1695 0.7217 1.2508 38 1 3.9316 0.9288 3.3893 39 1 3.9324 2.4705 2.4991 40 1 2.4790 1.4428 2.4987 41 1 6.0277 2.3722 0.0014 42 1 5.5226 5.0046 -0.8885 43 1 5.5224 5.0045 0.8914 44 1 7.7793 3.9011 -0.8395 45 1 7.5826 4.4837 2.1507 46 1 7.5422 2.8647 1.4107 47 1 9.7998 3.1751 0.5083 48 1 9.8284 3.5075 2.2580 49 1 12.9233 8.2735 1.8671 50 1 9.8006 5.4151 -1.0602 51 1 9.8275 6.9464 -0.1506 52 1 7.5436 6.3702 -1.0443 53 1 7.5833 6.5120 0.7302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356219929.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:08 Heat of formation + Delta-G solvation = -51.324269 kcal Electronic energy + Delta-G solvation = -27250.977749 eV Core-core repulsion = 23735.842809 eV Total energy + Delta-G solvation = -3515.134940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61009 -38.34366 -37.05794 -35.11768 -33.45806 -32.63401 -31.11374 -30.69454 -30.34015 -27.24692 -26.80560 -24.55771 -23.67486 -23.28359 -22.66172 -21.32366 -20.97911 -19.53455 -18.81472 -16.94595 -16.73522 -16.15367 -15.93425 -15.46667 -15.22182 -14.69242 -14.29739 -14.13799 -14.10787 -13.80434 -13.57182 -13.33431 -13.26437 -13.20291 -12.85285 -12.63335 -12.39486 -12.32390 -12.10333 -12.01772 -11.98502 -11.79002 -11.49524 -11.39572 -11.16718 -11.13888 -10.84253 -10.73719 -10.63340 -10.58635 -10.51160 -10.14298 -9.88971 -9.79544 -9.57588 -9.41438 -9.01571 -8.62404 -6.98156 -5.95279 -3.30952 2.63755 3.15341 3.31361 3.47540 3.50184 4.30720 4.38569 4.52405 4.52553 4.75946 4.80803 4.90876 4.93907 4.97604 5.02417 5.11319 5.13724 5.22156 5.29306 5.30966 5.38316 5.42571 5.48589 5.51399 5.61964 5.68920 5.70047 5.70574 5.77533 5.79608 5.82383 5.88295 5.91785 5.93970 6.00685 6.05218 6.05618 6.16705 6.22954 6.28183 6.38607 6.45490 6.50275 6.62151 6.64632 6.69709 6.96042 7.49525 7.96207 8.21687 8.32582 8.94050 9.71941 10.09867 11.20765 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.002690 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.659937 B =10406.373712 C =10626.188411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.096 4.096 4 C -0.080 4.080 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.158 4.158 8 C 0.523 3.477 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.124 3.876 12 C -0.091 4.091 13 C -0.128 4.128 14 C 0.149 3.851 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.127 3.873 25 C -0.126 4.126 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.399 0.601 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.020 0.980 48 H 0.062 0.938 49 H 0.262 0.738 50 H 0.024 0.976 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.848 -17.071 -5.692 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.134 4.134 4 C -0.083 4.083 5 C -0.201 4.201 6 C -0.150 4.150 7 C -0.215 4.215 8 C 0.309 3.691 9 O -0.421 6.421 10 N -0.376 5.376 11 C 0.000 4.000 12 C -0.110 4.110 13 C -0.167 4.167 14 C 0.023 3.977 15 N -0.330 5.330 16 C -0.388 4.388 17 H 0.102 0.898 18 C -0.177 4.177 19 N -0.552 5.552 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.001 3.999 25 C -0.166 4.166 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.234 0.766 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.042 0.958 51 H 0.091 0.909 52 H 0.074 0.926 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.265 -16.252 -5.643 26.583 hybrid contribution 0.676 -0.081 -1.048 1.250 sum -19.589 -16.333 -6.691 26.368 Atomic orbital electron populations 1.21763 0.95889 1.01388 1.01935 1.21678 0.95843 0.96822 1.02178 1.21469 0.91806 0.96632 1.03490 1.20884 0.97643 0.92439 0.97338 1.21918 1.01195 1.00819 0.96150 1.21636 1.00741 0.99650 0.92993 1.21867 1.01666 1.00806 0.97183 1.20484 0.82245 0.90990 0.75429 1.90688 1.55405 1.46346 1.49628 1.46089 1.06950 1.09361 1.75171 1.21519 0.94347 0.82109 1.02004 1.21298 0.92251 0.98483 0.98939 1.22064 0.98691 0.99065 0.96893 1.20907 0.90966 0.86716 0.99148 1.44351 1.48842 1.11906 1.27884 1.18919 1.09650 1.18739 0.91445 0.89763 1.25285 0.97456 0.97656 0.97281 1.69840 1.32623 1.18217 1.34474 0.86939 0.76257 0.77958 0.87433 1.21628 1.23198 1.19649 1.21317 0.91462 0.97400 0.89722 1.21994 0.98541 0.94720 1.01326 0.92782 0.92883 0.92745 0.91757 0.91643 0.90883 0.91426 0.92071 0.92133 0.91077 0.90535 0.91503 0.92368 0.92561 0.92123 0.76633 0.91857 0.91519 0.91262 0.91695 0.93066 0.96182 0.91928 0.92785 0.95839 0.90884 0.92608 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.85 5.23 -26.73 -0.14 -0.99 16 3 C -0.10 -0.86 3.21 -26.73 -0.09 -0.94 16 4 C -0.08 -0.70 0.43 -155.66 -0.07 -0.77 16 5 C -0.14 -1.02 8.02 37.16 0.30 -0.72 16 6 C -0.11 -0.85 4.54 -26.73 -0.12 -0.97 16 7 C -0.16 -1.38 9.31 37.16 0.35 -1.04 16 8 C 0.52 6.37 5.21 -10.99 -0.06 6.31 16 9 O -0.54 -8.79 15.98 5.55 0.09 -8.70 16 10 N -0.72 -8.16 5.06 -60.29 -0.30 -8.46 16 11 C 0.12 1.63 5.06 -4.04 -0.02 1.61 16 12 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 13 C -0.13 -1.93 5.25 -26.62 -0.14 -2.07 16 14 C 0.15 2.79 6.52 -3.72 -0.02 2.76 16 15 N -0.61 -14.12 2.77 -172.33 -0.48 -14.60 16 16 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 17 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 19 N -0.91 -27.87 13.97 55.49 0.78 -27.09 16 20 Si 0.88 22.34 24.35 -169.99 -4.14 18.20 16 21 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.27 -6.72 6.64 56.52 0.38 -6.34 16 24 C 0.13 2.70 4.20 -3.71 -0.02 2.69 16 25 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.07 0.74 6.38 -51.93 -0.33 0.41 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 35 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 36 H 0.08 0.47 6.43 -51.92 -0.33 0.13 16 37 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.61 7.22 -51.92 -0.37 0.24 16 40 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 41 H 0.40 3.70 6.49 -40.82 -0.26 3.44 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 50 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 51 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 53 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -32.04 388.37 -8.36 -40.40 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -9.92 Total: -0.28 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.24 Total: -5.32 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.01 Total: -50.15 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.04 -8.36 -40.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356219929.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.920 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds