Wall clock time and date at job start Fri Apr 10 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47006 * 2 1 4 4 C 1.53000 * 109.46732 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47344 * 60.00249 * 4 3 2 6 6 C 1.52999 * 109.47676 * 299.99879 * 4 3 2 7 7 C 1.52997 * 109.47036 * 300.00559 * 6 4 3 8 8 C 1.50702 * 109.47056 * 180.02562 * 4 3 2 9 9 O 1.21283 * 119.99820 * 0.02562 * 8 4 3 10 10 N 1.34772 * 120.00172 * 180.02562 * 8 4 3 11 11 C 1.46504 * 120.00088 * 179.97438 * 10 8 4 12 12 C 1.53000 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.53037 * 109.46576 * 295.02755 * 12 11 10 14 14 C 1.53186 * 109.31611 * 178.60218 * 13 12 11 15 15 N 1.46922 * 108.76731 * 54.65601 * 14 13 12 16 16 C 1.36942 * 120.63125 * 126.40299 * 15 14 13 17 17 H 1.07993 * 119.99817 * 332.61523 * 16 15 14 18 18 C 1.38805 * 119.99764 * 152.61194 * 16 15 14 19 19 N 1.31620 * 120.00096 * 159.34859 * 18 16 15 20 20 Si 1.86804 * 120.00462 * 339.34496 * 18 16 15 21 21 H 1.48493 * 109.47200 * 92.94133 * 20 18 16 22 22 H 1.48492 * 109.47380 * 212.94961 * 20 18 16 23 23 H 1.48508 * 109.46726 * 332.94523 * 20 18 16 24 24 C 1.46925 * 118.73948 * 306.38866 * 15 14 13 25 25 C 1.53044 * 109.45878 * 174.97228 * 12 11 10 26 26 H 1.09007 * 109.47268 * 59.99788 * 1 2 3 27 27 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47374 * 299.99989 * 1 2 3 29 29 H 1.09003 * 109.46890 * 239.99900 * 2 1 3 30 30 H 1.09004 * 109.46548 * 120.00173 * 2 1 3 31 31 H 1.09003 * 109.47377 * 60.00198 * 3 2 1 32 32 H 1.08994 * 109.47409 * 299.99559 * 3 2 1 33 33 H 1.09007 * 109.47257 * 59.99619 * 5 4 3 34 34 H 1.08995 * 109.47455 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47112 * 300.00359 * 5 4 3 36 36 H 1.09009 * 109.46645 * 59.99927 * 6 4 3 37 37 H 1.08996 * 109.47585 * 180.02562 * 6 4 3 38 38 H 1.08998 * 109.47327 * 179.97438 * 7 6 4 39 39 H 1.09009 * 109.46888 * 299.99220 * 7 6 4 40 40 H 1.09002 * 109.47735 * 59.99287 * 7 6 4 41 41 H 0.96999 * 120.00390 * 359.97438 * 10 8 4 42 42 H 1.08994 * 109.47399 * 299.99809 * 11 10 8 43 43 H 1.09003 * 109.47147 * 60.00301 * 11 10 8 44 44 H 1.09002 * 109.45978 * 55.00643 * 12 11 10 45 45 H 1.08999 * 109.49900 * 298.57078 * 13 12 11 46 46 H 1.09004 * 109.49184 * 58.66026 * 13 12 11 47 47 H 1.08999 * 109.59987 * 294.87066 * 14 13 12 48 48 H 1.09003 * 109.70396 * 174.50790 * 14 13 12 49 49 H 0.97001 * 120.00092 * 179.97438 * 19 18 16 50 50 H 1.09003 * 109.58261 * 293.81859 * 24 15 14 51 51 H 1.08999 * 109.70669 * 173.46310 * 24 15 14 52 52 H 1.09000 * 109.50251 * 301.33924 * 25 12 11 53 53 H 1.09003 * 109.49450 * 61.43812 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0805 0.7210 -1.2483 6 6 4.0795 0.7214 1.2502 7 6 3.5690 1.4427 2.4991 8 6 4.0723 2.8632 0.0013 9 8 3.2842 3.7851 0.0017 10 7 5.3974 3.1095 0.0014 11 6 5.8857 4.4907 0.0014 12 6 7.4157 4.4906 0.0022 13 6 7.9250 3.8804 1.3100 14 6 9.4565 3.8500 1.2923 15 7 9.9532 5.2069 1.0264 16 6 10.8613 5.7945 1.8661 17 1 10.8973 5.5096 2.9072 18 6 11.7357 6.7564 1.3792 19 7 12.3120 7.6015 2.2074 20 14 12.0946 6.8513 -0.4516 21 1 11.1663 7.8198 -1.0884 22 1 13.4953 7.2985 -0.6589 23 1 11.9073 5.5109 -1.0629 24 6 9.4572 5.9212 -0.1579 25 6 7.9257 5.9281 -0.1242 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7175 1.2347 -2.1385 34 1 5.1704 0.7213 -1.2480 35 1 3.7171 -0.3066 -1.2483 36 1 3.7161 -0.3064 1.2502 37 1 5.1695 0.7217 1.2508 38 1 3.9316 0.9288 3.3893 39 1 3.9324 2.4705 2.4991 40 1 2.4790 1.4428 2.4987 41 1 6.0277 2.3722 0.0014 42 1 5.5226 5.0046 -0.8885 43 1 5.5224 5.0045 0.8914 44 1 7.7793 3.9011 -0.8395 45 1 7.5826 4.4837 2.1507 46 1 7.5422 2.8647 1.4107 47 1 9.7998 3.1751 0.5083 48 1 9.8284 3.5075 2.2580 49 1 12.9233 8.2735 1.8671 50 1 9.8006 5.4151 -1.0602 51 1 9.8275 6.9464 -0.1506 52 1 7.5436 6.3702 -1.0443 53 1 7.5833 6.5120 0.7302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356219929.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:07 Heat of formation + Delta-G solvation = -71.232228 kcal Electronic energy + Delta-G solvation = -27251.841023 eV Core-core repulsion = 23735.842809 eV Total energy + Delta-G solvation = -3515.998214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50406 -39.72042 -37.94091 -36.46835 -34.62830 -33.78374 -32.74383 -31.88267 -31.35400 -28.62478 -27.46864 -25.88605 -24.82709 -24.25907 -23.80392 -22.78653 -21.84053 -20.91862 -19.71550 -18.74253 -17.72008 -17.23443 -17.03053 -16.70090 -16.22374 -15.92965 -15.60325 -15.35200 -15.18086 -14.97650 -14.80098 -14.44767 -14.38715 -14.17278 -13.90649 -13.86976 -13.60382 -13.39634 -13.27489 -12.98332 -12.91334 -12.71083 -12.58993 -12.54416 -12.25275 -12.12883 -12.09255 -11.79201 -11.74680 -11.74202 -11.59069 -11.36582 -11.28213 -11.20813 -11.18696 -10.71808 -10.53852 -10.04360 -8.91892 -8.16378 -5.47553 1.30325 1.40951 1.50428 1.70323 2.23297 2.42042 3.06044 3.37601 3.64484 3.67623 3.78424 3.86248 3.88783 3.95188 4.13778 4.26061 4.35108 4.37685 4.41048 4.43701 4.54302 4.56880 4.62836 4.66913 4.72618 4.74146 4.77372 4.82653 4.88602 4.91352 4.95294 5.00824 5.03545 5.09605 5.14926 5.15706 5.16146 5.20165 5.20628 5.26737 5.27245 5.30193 5.41299 5.45485 5.48298 5.59301 5.61631 5.87761 6.13106 6.60270 6.93633 7.30148 7.64347 8.04263 9.03679 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.002690 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.659937 B =10406.373712 C =10626.188411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.074 4.074 5 C -0.142 4.142 6 C -0.109 4.109 7 C -0.158 4.158 8 C 0.519 3.481 9 O -0.590 6.590 10 N -0.714 5.714 11 C 0.135 3.865 12 C -0.078 4.078 13 C -0.117 4.117 14 C 0.142 3.858 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.049 0.951 18 C -0.040 4.040 19 N -0.960 5.960 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.313 1.313 23 H -0.257 1.257 24 C 0.120 3.880 25 C -0.121 4.121 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.057 0.943 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.261 0.739 50 H 0.038 0.962 51 H 0.045 0.955 52 H 0.080 0.920 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.948 -20.309 -7.852 30.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.199 4.199 6 C -0.147 4.147 7 C -0.215 4.215 8 C 0.307 3.693 9 O -0.470 6.470 10 N -0.366 5.366 11 C 0.011 3.989 12 C -0.097 4.097 13 C -0.156 4.156 14 C 0.018 3.982 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.067 0.933 18 C -0.234 4.234 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.242 1.242 23 H -0.181 1.181 24 C -0.004 4.004 25 C -0.161 4.161 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.250 0.750 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.060 0.940 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.099 0.901 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.388 -19.551 -7.826 30.016 hybrid contribution 0.941 0.909 -0.273 1.337 sum -20.447 -18.642 -8.099 28.831 Atomic orbital electron populations 1.21782 0.95963 1.02034 1.01410 1.21653 0.95791 0.95127 1.03289 1.21426 0.92177 0.97932 1.01648 1.20901 0.97314 0.90314 0.99145 1.21948 1.01979 1.01520 0.94465 1.21682 1.01434 1.00333 0.91233 1.21865 1.01559 0.99486 0.98639 1.21175 0.81953 0.92105 0.74080 1.90671 1.56542 1.48094 1.51682 1.45957 1.07104 1.08925 1.74617 1.21226 0.93383 0.83189 1.01135 1.21169 0.92690 0.96736 0.99120 1.21936 0.95893 1.01060 0.96663 1.21130 0.93181 0.84609 0.99307 1.44510 1.48386 1.13925 1.27868 1.18865 1.09968 1.18013 0.90824 0.93324 1.25951 0.97975 0.97804 1.01715 1.69982 1.34336 1.19638 1.36646 0.85858 0.75433 0.78719 0.82109 1.20310 1.24202 1.18095 1.21380 0.94120 0.95735 0.89199 1.21891 0.95493 0.96782 1.01898 0.93310 0.91598 0.93390 0.90428 0.90536 0.92837 0.93292 0.93000 0.90898 0.88947 0.88165 0.90343 0.91269 0.95299 0.92414 0.75030 0.91999 0.93355 0.89138 0.93770 0.89234 0.94016 0.92962 0.93054 0.94424 0.93661 0.90128 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.30 5.23 30.59 0.16 -1.14 16 3 C -0.09 -1.56 3.21 30.59 0.10 -1.46 16 4 C -0.07 -1.11 0.43 -52.93 -0.02 -1.13 16 5 C -0.14 -1.50 8.02 71.98 0.58 -0.92 16 6 C -0.11 -1.28 4.54 30.59 0.14 -1.14 16 7 C -0.16 -2.51 9.31 71.98 0.67 -1.84 16 8 C 0.52 11.88 5.21 87.66 0.46 12.34 16 9 O -0.59 -19.08 15.98 -3.04 -0.05 -19.13 16 10 N -0.71 -14.18 5.06 -463.06 -2.34 -16.52 16 11 C 0.13 3.28 5.06 86.38 0.44 3.72 16 12 C -0.08 -2.00 2.19 -10.77 -0.02 -2.02 16 13 C -0.12 -3.21 5.25 30.67 0.16 -3.05 16 14 C 0.14 5.05 6.52 86.36 0.56 5.61 16 15 N -0.62 -28.52 2.77 -699.13 -1.94 -30.46 16 16 C -0.25 -14.03 10.04 84.03 0.84 -13.18 16 17 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 18 C -0.04 -2.36 5.23 84.86 0.44 -1.92 16 19 N -0.96 -61.01 13.97 21.65 0.30 -60.71 16 20 Si 0.95 46.55 24.35 68.60 1.67 48.22 16 21 H -0.28 -12.85 6.62 99.48 0.66 -12.19 16 22 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 23 H -0.26 -11.81 6.64 99.48 0.66 -11.15 16 24 C 0.12 4.93 4.20 86.36 0.36 5.29 16 25 C -0.12 -3.89 5.36 30.67 0.16 -3.73 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.65 6.43 -2.39 -0.02 0.63 16 30 H 0.08 0.67 6.43 -2.39 -0.02 0.65 16 31 H 0.05 1.09 6.38 -2.39 -0.02 1.07 16 32 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.07 0.61 7.56 -2.39 -0.02 0.59 16 35 H 0.09 0.61 6.43 -2.39 -0.02 0.60 16 36 H 0.10 0.76 6.43 -2.38 -0.02 0.75 16 37 H 0.08 0.77 7.56 -2.39 -0.02 0.75 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.03 0.61 7.22 -2.38 -0.02 0.59 16 40 H 0.06 0.93 6.43 -2.39 -0.02 0.92 16 41 H 0.41 5.91 6.49 -92.71 -0.60 5.31 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.81 7.15 -2.39 -0.02 1.79 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 49 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 50 H 0.04 1.45 7.08 -2.39 -0.02 1.44 16 51 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16 52 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -73.15 388.37 3.56 -69.59 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.17 Total: 14.58 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.74 Total: -5.58 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.97 Total: -107.68 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.67 Total: 48.22 kcal Total: -73.15 3.56 -69.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356219929.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.646 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds