Wall clock time and date at job start Fri Apr 10 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46937 * 2 1 4 4 C 1.53000 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47025 * 300.00090 * 4 3 2 6 6 C 1.53006 * 109.47236 * 59.99706 * 4 3 2 7 7 C 1.53000 * 109.46993 * 59.99971 * 6 4 3 8 8 C 1.50697 * 109.47081 * 179.97438 * 4 3 2 9 9 O 1.21277 * 120.00414 * 0.02562 * 8 4 3 10 10 N 1.34778 * 120.00049 * 179.97438 * 8 4 3 11 11 C 1.46497 * 120.00184 * 180.02562 * 10 8 4 12 12 C 1.53000 * 109.47215 * 180.02562 * 11 10 8 13 13 C 1.53041 * 109.45837 * 295.02749 * 12 11 10 14 14 C 1.53194 * 109.31555 * 178.59974 * 13 12 11 15 15 N 1.46933 * 108.76384 * 54.65402 * 14 13 12 16 16 C 1.36933 * 120.62946 * 126.40264 * 15 14 13 17 17 H 1.08000 * 120.00547 * 331.83174 * 16 15 14 18 18 C 1.38816 * 119.99756 * 151.82756 * 16 15 14 19 19 N 1.31622 * 119.99741 * 343.07719 * 18 16 15 20 20 Si 1.86798 * 119.99853 * 163.07909 * 18 16 15 21 21 H 1.48492 * 109.47211 * 90.00214 * 20 18 16 22 22 H 1.48507 * 109.46619 * 210.00057 * 20 18 16 23 23 H 1.48502 * 109.47108 * 329.99744 * 20 18 16 24 24 C 1.46927 * 118.73865 * 306.38756 * 15 14 13 25 25 C 1.53035 * 109.46287 * 174.97561 * 12 11 10 26 26 H 1.09008 * 109.46937 * 299.99538 * 1 2 3 27 27 H 1.08993 * 109.47568 * 60.00253 * 1 2 3 28 28 H 1.09007 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46996 * 240.00264 * 2 1 3 30 30 H 1.08993 * 109.47568 * 119.99747 * 2 1 3 31 31 H 1.08999 * 109.47062 * 60.00304 * 3 2 1 32 32 H 1.09005 * 109.47074 * 299.99896 * 3 2 1 33 33 H 1.08999 * 109.47113 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46331 * 299.99981 * 5 4 3 35 35 H 1.08997 * 109.47315 * 59.99628 * 5 4 3 36 36 H 1.08997 * 109.46978 * 300.00294 * 6 4 3 37 37 H 1.08997 * 109.47039 * 180.02562 * 6 4 3 38 38 H 1.09007 * 109.46719 * 59.99892 * 7 6 4 39 39 H 1.09000 * 109.47151 * 300.00423 * 7 6 4 40 40 H 1.08999 * 109.47216 * 179.97438 * 7 6 4 41 41 H 0.97002 * 119.99662 * 359.97438 * 10 8 4 42 42 H 1.08998 * 109.47381 * 300.00195 * 11 10 8 43 43 H 1.08999 * 109.46950 * 60.00238 * 11 10 8 44 44 H 1.08997 * 109.46327 * 54.99528 * 12 11 10 45 45 H 1.08996 * 109.50277 * 298.56538 * 13 12 11 46 46 H 1.09004 * 109.49866 * 58.66284 * 13 12 11 47 47 H 1.08998 * 109.59708 * 294.86904 * 14 13 12 48 48 H 1.08997 * 109.70850 * 174.50389 * 14 13 12 49 49 H 0.97003 * 119.99676 * 179.97438 * 19 18 16 50 50 H 1.09000 * 109.58341 * 293.82204 * 24 15 14 51 51 H 1.08992 * 109.70246 * 173.46463 * 24 15 14 52 52 H 1.09006 * 109.49296 * 301.33540 * 25 12 11 53 53 H 1.09000 * 109.50235 * 61.43222 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0805 0.7212 1.2483 6 6 4.0795 0.7215 -1.2502 7 6 3.5689 1.4429 -2.4992 8 6 4.0722 2.8634 -0.0013 9 8 3.2841 3.7853 -0.0008 10 7 5.3972 3.1098 -0.0014 11 6 5.8855 4.4910 -0.0014 12 6 7.4155 4.4911 -0.0022 13 6 7.9260 3.8805 1.3050 14 6 9.4575 3.8501 1.2859 15 7 9.9539 5.2072 1.0198 16 6 10.8627 5.7947 1.8588 17 1 10.8913 5.5187 2.9026 18 6 11.7475 6.7449 1.3677 19 7 11.9513 6.8466 0.0713 20 14 12.6489 7.8793 2.5467 21 1 13.9335 7.2537 2.9509 22 1 12.9194 9.1764 1.8761 23 1 11.8102 8.1098 3.7504 24 6 9.4568 5.9218 -0.1639 25 6 7.9253 5.9285 -0.1286 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.1705 0.7216 1.2481 34 1 3.7174 1.2350 2.1385 35 1 3.7172 -0.3065 1.2484 36 1 3.7162 -0.3061 -1.2502 37 1 5.1695 0.7212 -1.2504 38 1 3.9322 2.4706 -2.4991 39 1 2.4789 1.4429 -2.4987 40 1 3.9323 0.9294 -3.3893 41 1 6.0276 2.3725 -0.0007 42 1 5.5221 5.0049 -0.8914 43 1 5.5223 5.0048 0.8886 44 1 7.7783 3.9017 -0.8443 45 1 7.5844 4.4836 2.1461 46 1 7.5435 2.8648 1.4059 47 1 9.8001 3.1754 0.5014 48 1 9.8304 3.5074 2.2511 49 1 12.5693 7.5109 -0.2718 50 1 9.7993 5.4159 -1.0666 51 1 9.8270 6.9469 -0.1566 52 1 7.5421 6.3708 -1.0483 53 1 7.5837 6.5123 0.7261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356219935.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:11 Heat of formation + Delta-G solvation = -57.365119 kcal Electronic energy + Delta-G solvation = -27115.867744 eV Core-core repulsion = 23600.470853 eV Total energy + Delta-G solvation = -3515.396891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.54112 -38.08174 -36.95235 -34.95075 -33.41583 -32.59976 -30.90017 -30.57023 -29.70606 -27.07836 -26.71296 -24.57870 -23.71363 -23.18420 -22.22188 -21.21440 -20.81881 -19.29081 -18.69921 -16.88486 -16.65215 -16.07211 -15.87160 -15.40361 -14.88976 -14.45968 -14.27799 -14.11288 -13.79226 -13.62165 -13.51377 -13.30415 -13.24557 -13.00263 -12.60377 -12.38930 -12.35042 -12.25901 -12.07621 -11.95889 -11.83067 -11.46385 -11.33756 -11.13059 -11.10652 -10.99406 -10.71106 -10.69052 -10.55969 -10.50111 -10.24476 -10.21996 -9.94548 -9.68175 -9.53639 -9.37468 -8.92366 -8.46796 -6.66656 -5.79119 -3.21340 2.70517 3.24110 3.37133 3.44340 3.46927 4.35181 4.44142 4.49740 4.56966 4.80058 4.84240 4.96865 5.03256 5.13390 5.17954 5.23439 5.33030 5.35120 5.38504 5.41672 5.42791 5.52307 5.55593 5.60929 5.64991 5.72280 5.75022 5.81792 5.86254 5.88317 5.94190 5.95268 6.01136 6.05706 6.09606 6.16503 6.26020 6.32230 6.44379 6.51281 6.60243 6.69999 6.76816 6.81474 6.97834 7.36867 7.58294 7.65902 7.79437 8.29087 8.45359 9.21566 9.85171 10.41931 11.29417 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.033751 B = 0.002505 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.401952 B =11175.168599 C =11315.251980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.096 4.096 4 C -0.080 4.080 5 C -0.144 4.144 6 C -0.113 4.113 7 C -0.158 4.158 8 C 0.522 3.478 9 O -0.545 6.545 10 N -0.723 5.723 11 C 0.123 3.877 12 C -0.089 4.089 13 C -0.126 4.126 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.399 0.601 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.087 0.913 52 H 0.050 0.950 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -14.799 -2.481 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.134 4.134 4 C -0.083 4.083 5 C -0.201 4.201 6 C -0.150 4.150 7 C -0.215 4.215 8 C 0.308 3.692 9 O -0.422 6.422 10 N -0.374 5.374 11 C 0.000 4.000 12 C -0.108 4.108 13 C -0.165 4.165 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.234 0.766 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.106 0.894 52 H 0.069 0.931 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.967 -13.989 -2.558 23.706 hybrid contribution 0.894 0.326 0.525 1.087 sum -18.073 -13.663 -2.033 22.747 Atomic orbital electron populations 1.21763 0.95913 1.01363 1.01923 1.21677 0.95814 0.96858 1.02176 1.21467 0.91856 0.96587 1.03462 1.20882 0.97597 0.92521 0.97314 1.21920 1.01299 1.00734 0.96154 1.21633 1.00738 0.99645 0.93014 1.21865 1.01689 1.00748 0.97177 1.20473 0.82312 0.90939 0.75491 1.90680 1.55435 1.46349 1.49769 1.46112 1.06879 1.09489 1.74969 1.21558 0.94794 0.81894 1.01761 1.21298 0.91708 0.99093 0.98721 1.22065 0.99087 0.98561 0.96828 1.20888 0.90747 0.88071 0.98402 1.44045 1.48235 1.10842 1.28388 1.19163 1.09527 1.19222 0.90220 0.91808 1.25046 0.97246 1.01688 0.95732 1.70031 1.37528 1.35955 1.11250 0.86317 0.79654 0.80502 0.80428 1.21416 1.21550 1.20501 1.20753 0.87050 0.99251 0.88323 1.22177 1.00875 0.93826 1.00380 0.92760 0.92782 0.92902 0.91691 0.91719 0.91397 0.90954 0.92045 0.92008 0.91130 0.90555 0.91522 0.92623 0.92098 0.92462 0.76649 0.91978 0.91763 0.91402 0.92208 0.93564 0.96663 0.92917 0.93651 0.96491 0.89438 0.93116 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.89 5.23 -26.73 -0.14 -1.03 16 3 C -0.10 -0.89 3.21 -26.73 -0.09 -0.98 16 4 C -0.08 -0.74 0.43 -155.66 -0.07 -0.81 16 5 C -0.14 -1.13 8.02 37.16 0.30 -0.84 16 6 C -0.11 -0.88 4.54 -26.73 -0.12 -1.00 16 7 C -0.16 -1.38 9.31 37.16 0.35 -1.04 16 8 C 0.52 6.72 5.21 -10.99 -0.06 6.66 16 9 O -0.55 -9.15 15.98 5.56 0.09 -9.07 16 10 N -0.72 -8.81 5.06 -60.30 -0.30 -9.11 16 11 C 0.12 1.76 5.06 -4.04 -0.02 1.74 16 12 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 13 C -0.13 -2.06 5.25 -26.61 -0.14 -2.19 16 14 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 15 N -0.59 -14.63 2.99 -172.32 -0.52 -15.14 16 16 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 17 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 19 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 20 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 25 C -0.13 -2.46 5.36 -26.61 -0.14 -2.61 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 30 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 32 H 0.07 0.76 6.38 -51.93 -0.33 0.42 16 33 H 0.06 0.46 7.56 -51.93 -0.39 0.06 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 36 H 0.08 0.49 6.43 -51.93 -0.33 0.15 16 37 H 0.07 0.50 7.57 -51.93 -0.39 0.11 16 38 H 0.05 0.60 7.22 -51.92 -0.37 0.23 16 39 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.40 4.11 6.48 -40.82 -0.26 3.84 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 52 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 53 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -30.81 394.82 -9.41 -40.22 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -9.99 Total: 0.50 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.23 Total: -4.48 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.20 Total: -49.75 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.81 -9.41 -40.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356219935.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.144 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds