Wall clock time and date at job start Fri Apr 10 2020 22:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46937 * 2 1 4 4 C 1.53000 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47025 * 300.00090 * 4 3 2 6 6 C 1.53006 * 109.47236 * 59.99706 * 4 3 2 7 7 C 1.53000 * 109.46993 * 59.99971 * 6 4 3 8 8 C 1.50697 * 109.47081 * 179.97438 * 4 3 2 9 9 O 1.21277 * 120.00414 * 0.02562 * 8 4 3 10 10 N 1.34778 * 120.00049 * 179.97438 * 8 4 3 11 11 C 1.46497 * 120.00184 * 180.02562 * 10 8 4 12 12 C 1.53000 * 109.47215 * 180.02562 * 11 10 8 13 13 C 1.53041 * 109.45837 * 295.02749 * 12 11 10 14 14 C 1.53194 * 109.31555 * 178.59974 * 13 12 11 15 15 N 1.46933 * 108.76384 * 54.65402 * 14 13 12 16 16 C 1.36933 * 120.62946 * 126.40264 * 15 14 13 17 17 H 1.08000 * 120.00547 * 331.83174 * 16 15 14 18 18 C 1.38816 * 119.99756 * 151.82756 * 16 15 14 19 19 N 1.31622 * 119.99741 * 343.07719 * 18 16 15 20 20 Si 1.86798 * 119.99853 * 163.07909 * 18 16 15 21 21 H 1.48492 * 109.47211 * 90.00214 * 20 18 16 22 22 H 1.48507 * 109.46619 * 210.00057 * 20 18 16 23 23 H 1.48502 * 109.47108 * 329.99744 * 20 18 16 24 24 C 1.46927 * 118.73865 * 306.38756 * 15 14 13 25 25 C 1.53035 * 109.46287 * 174.97561 * 12 11 10 26 26 H 1.09008 * 109.46937 * 299.99538 * 1 2 3 27 27 H 1.08993 * 109.47568 * 60.00253 * 1 2 3 28 28 H 1.09007 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46996 * 240.00264 * 2 1 3 30 30 H 1.08993 * 109.47568 * 119.99747 * 2 1 3 31 31 H 1.08999 * 109.47062 * 60.00304 * 3 2 1 32 32 H 1.09005 * 109.47074 * 299.99896 * 3 2 1 33 33 H 1.08999 * 109.47113 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46331 * 299.99981 * 5 4 3 35 35 H 1.08997 * 109.47315 * 59.99628 * 5 4 3 36 36 H 1.08997 * 109.46978 * 300.00294 * 6 4 3 37 37 H 1.08997 * 109.47039 * 180.02562 * 6 4 3 38 38 H 1.09007 * 109.46719 * 59.99892 * 7 6 4 39 39 H 1.09000 * 109.47151 * 300.00423 * 7 6 4 40 40 H 1.08999 * 109.47216 * 179.97438 * 7 6 4 41 41 H 0.97002 * 119.99662 * 359.97438 * 10 8 4 42 42 H 1.08998 * 109.47381 * 300.00195 * 11 10 8 43 43 H 1.08999 * 109.46950 * 60.00238 * 11 10 8 44 44 H 1.08997 * 109.46327 * 54.99528 * 12 11 10 45 45 H 1.08996 * 109.50277 * 298.56538 * 13 12 11 46 46 H 1.09004 * 109.49866 * 58.66284 * 13 12 11 47 47 H 1.08998 * 109.59708 * 294.86904 * 14 13 12 48 48 H 1.08997 * 109.70850 * 174.50389 * 14 13 12 49 49 H 0.97003 * 119.99676 * 179.97438 * 19 18 16 50 50 H 1.09000 * 109.58341 * 293.82204 * 24 15 14 51 51 H 1.08992 * 109.70246 * 173.46463 * 24 15 14 52 52 H 1.09006 * 109.49296 * 301.33540 * 25 12 11 53 53 H 1.09000 * 109.50235 * 61.43222 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0805 0.7212 1.2483 6 6 4.0795 0.7215 -1.2502 7 6 3.5689 1.4429 -2.4992 8 6 4.0722 2.8634 -0.0013 9 8 3.2841 3.7853 -0.0008 10 7 5.3972 3.1098 -0.0014 11 6 5.8855 4.4910 -0.0014 12 6 7.4155 4.4911 -0.0022 13 6 7.9260 3.8805 1.3050 14 6 9.4575 3.8501 1.2859 15 7 9.9539 5.2072 1.0198 16 6 10.8627 5.7947 1.8588 17 1 10.8913 5.5187 2.9026 18 6 11.7475 6.7449 1.3677 19 7 11.9513 6.8466 0.0713 20 14 12.6489 7.8793 2.5467 21 1 13.9335 7.2537 2.9509 22 1 12.9194 9.1764 1.8761 23 1 11.8102 8.1098 3.7504 24 6 9.4568 5.9218 -0.1639 25 6 7.9253 5.9285 -0.1286 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.1705 0.7216 1.2481 34 1 3.7174 1.2350 2.1385 35 1 3.7172 -0.3065 1.2484 36 1 3.7162 -0.3061 -1.2502 37 1 5.1695 0.7212 -1.2504 38 1 3.9322 2.4706 -2.4991 39 1 2.4789 1.4429 -2.4987 40 1 3.9323 0.9294 -3.3893 41 1 6.0276 2.3725 -0.0007 42 1 5.5221 5.0049 -0.8914 43 1 5.5223 5.0048 0.8886 44 1 7.7783 3.9017 -0.8443 45 1 7.5844 4.4836 2.1461 46 1 7.5435 2.8648 1.4059 47 1 9.8001 3.1754 0.5014 48 1 9.8304 3.5074 2.2511 49 1 12.5693 7.5109 -0.2718 50 1 9.7993 5.4159 -1.0666 51 1 9.8270 6.9469 -0.1566 52 1 7.5421 6.3708 -1.0483 53 1 7.5837 6.5123 0.7261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356219935.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:10 Heat of formation + Delta-G solvation = -74.518488 kcal Electronic energy + Delta-G solvation = -27116.611570 eV Core-core repulsion = 23600.470853 eV Total energy + Delta-G solvation = -3516.140717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49444 -39.52777 -37.91110 -36.39131 -34.60055 -33.71681 -32.46130 -31.46478 -31.28043 -28.50947 -27.46579 -26.03367 -24.74770 -24.02357 -23.71854 -22.64610 -21.81515 -20.77449 -19.69714 -18.66237 -17.64624 -17.13370 -16.82873 -16.66308 -16.25534 -15.74812 -15.34982 -15.32223 -15.25136 -14.85573 -14.78243 -14.37089 -14.13184 -13.98780 -13.88957 -13.82617 -13.40211 -13.24932 -12.99668 -12.96707 -12.81439 -12.70828 -12.58281 -12.55781 -12.27448 -12.09889 -12.01478 -11.86061 -11.77836 -11.74442 -11.62708 -11.35921 -11.23192 -11.18572 -11.10796 -10.59321 -10.50349 -10.03850 -8.66634 -7.87546 -5.32230 1.45209 1.47298 1.56602 1.70542 2.24330 2.51035 3.27088 3.64731 3.68015 3.70954 3.84088 3.87810 3.94558 4.07152 4.14686 4.26470 4.35844 4.41811 4.50889 4.53401 4.57119 4.68130 4.69253 4.72903 4.73871 4.80092 4.84264 4.91386 4.92873 4.95713 5.01773 5.04044 5.12772 5.15649 5.16329 5.20592 5.27111 5.27977 5.28579 5.31051 5.39408 5.42101 5.48632 5.49139 5.55271 5.61273 5.65789 5.78503 6.39939 6.60527 7.15735 7.29978 7.88173 8.38893 9.18631 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.033751 B = 0.002505 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.401952 B =11175.168599 C =11315.251980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.074 4.074 5 C -0.143 4.143 6 C -0.110 4.110 7 C -0.158 4.158 8 C 0.519 3.481 9 O -0.589 6.589 10 N -0.714 5.714 11 C 0.137 3.863 12 C -0.076 4.076 13 C -0.113 4.113 14 C 0.140 3.860 15 N -0.612 5.612 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.052 4.052 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.283 1.283 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.178 3.822 25 C -0.123 4.123 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.411 0.589 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.019 0.981 48 H 0.052 0.948 49 H 0.249 0.751 50 H -0.001 1.001 51 H 0.050 0.950 52 H 0.067 0.933 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.420 -17.369 -2.008 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.131 4.131 4 C -0.077 4.077 5 C -0.200 4.200 6 C -0.147 4.147 7 C -0.215 4.215 8 C 0.307 3.693 9 O -0.470 6.470 10 N -0.366 5.366 11 C 0.012 3.988 12 C -0.095 4.095 13 C -0.152 4.152 14 C 0.015 3.985 15 N -0.336 5.336 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.197 1.197 24 C 0.053 3.947 25 C -0.162 4.162 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.248 0.752 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.017 0.983 51 H 0.069 0.931 52 H 0.085 0.915 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.850 -16.606 -2.071 25.963 hybrid contribution 1.145 1.104 0.360 1.631 sum -18.705 -15.502 -1.711 24.354 Atomic orbital electron populations 1.21780 0.95900 1.02047 1.01425 1.21652 0.95836 0.95089 1.03286 1.21427 0.92055 0.97974 1.01675 1.20904 0.97393 0.90244 0.99122 1.21956 1.01927 1.01567 0.94559 1.21679 1.01341 1.00378 0.91304 1.21863 1.01615 0.99494 0.98508 1.21191 0.81891 0.92158 0.74090 1.90662 1.56495 1.48090 1.51729 1.45982 1.07146 1.08904 1.74558 1.21221 0.93381 0.83148 1.01004 1.21127 0.92541 0.97005 0.98847 1.21915 0.95995 1.00707 0.96549 1.21076 0.93234 0.85839 0.98364 1.44331 1.48229 1.12817 1.28224 1.19486 1.09585 1.19340 0.90748 0.91785 1.25784 0.98552 1.03270 0.97148 1.70178 1.38454 1.36585 1.12851 0.85325 0.78537 0.78294 0.78595 1.21009 1.21934 1.19745 1.20548 0.90024 0.96783 0.87394 1.21983 0.97222 0.96137 1.00880 0.93387 0.93273 0.91576 0.90430 0.90553 0.93415 0.92645 0.91059 0.93139 0.88837 0.88126 0.90540 0.95226 0.92303 0.91134 0.75151 0.92470 0.92992 0.90496 0.93296 0.89675 0.96302 0.92968 0.94153 0.98308 0.93132 0.91482 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.39 5.23 30.59 0.16 -1.23 16 3 C -0.09 -1.64 3.21 30.60 0.10 -1.54 16 4 C -0.07 -1.21 0.43 -52.92 -0.02 -1.23 16 5 C -0.14 -1.79 8.02 71.98 0.58 -1.21 16 6 C -0.11 -1.37 4.54 30.60 0.14 -1.23 16 7 C -0.16 -2.48 9.31 71.98 0.67 -1.81 16 8 C 0.52 12.75 5.21 87.66 0.46 13.20 16 9 O -0.59 -19.89 15.98 -3.02 -0.05 -19.93 16 10 N -0.71 -15.90 5.06 -463.07 -2.34 -18.24 16 11 C 0.14 3.72 5.06 86.38 0.44 4.16 16 12 C -0.08 -2.26 2.19 -10.77 -0.02 -2.29 16 13 C -0.11 -3.42 5.25 30.67 0.16 -3.26 16 14 C 0.14 5.50 6.52 86.36 0.56 6.06 16 15 N -0.61 -30.44 2.99 -699.08 -2.09 -32.53 16 16 C -0.26 -14.41 9.58 84.04 0.81 -13.60 16 17 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 18 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 19 N -0.93 -55.50 11.19 21.65 0.24 -55.26 16 20 Si 0.96 45.17 29.59 68.60 2.03 47.20 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 C 0.18 8.53 5.30 86.36 0.46 8.99 16 25 C -0.12 -4.52 5.36 30.67 0.16 -4.35 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.08 0.71 6.43 -2.39 -0.02 0.70 16 30 H 0.08 0.72 6.43 -2.39 -0.02 0.70 16 31 H 0.05 1.01 8.10 -2.39 -0.02 1.00 16 32 H 0.05 1.15 6.38 -2.38 -0.02 1.13 16 33 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.77 6.43 -2.39 -0.02 0.76 16 36 H 0.10 0.83 6.43 -2.39 -0.02 0.82 16 37 H 0.08 0.84 7.57 -2.39 -0.02 0.82 16 38 H 0.03 0.61 7.22 -2.38 -0.02 0.59 16 39 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.41 7.07 6.48 -92.71 -0.60 6.46 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.95 7.15 -2.38 -0.02 1.94 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 49 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 51 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 52 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 53 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -69.04 394.82 3.82 -65.22 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.26 Total: 16.50 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.78 Total: -2.96 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.19 Total: -106.03 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.04 3.82 -65.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356219935.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.300 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds