Wall clock time and date at job start Fri Apr 10 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47166 * 2 1 4 4 C 1.52996 * 110.30324 * 301.45157 * 3 2 1 5 5 C 1.52999 * 109.46946 * 300.67859 * 4 3 2 6 6 C 1.54293 * 110.33756 * 63.62536 * 3 2 1 7 7 C 1.54391 * 104.95684 * 118.87391 * 6 3 2 8 8 N 1.48139 * 104.61810 * 336.12857 * 7 6 3 9 9 C 1.34776 * 127.83800 * 219.59042 * 8 7 6 10 10 O 1.21590 * 119.99924 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99988 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00035 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47395 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46786 * 299.99879 * 13 12 11 15 15 C 1.52996 * 109.46867 * 59.99740 * 13 12 11 16 16 C 1.52999 * 109.47280 * 180.02562 * 13 12 11 17 17 C 1.50695 * 109.46804 * 180.02562 * 16 13 12 18 18 H 1.08003 * 120.00680 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99848 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00135 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46832 * 90.00460 * 21 19 17 23 23 H 1.48490 * 109.47231 * 210.00263 * 21 19 17 24 24 H 1.48497 * 109.47243 * 330.00510 * 21 19 17 25 25 C 1.48151 * 104.32579 * 39.84815 * 8 7 6 26 26 H 1.08998 * 109.47306 * 186.51866 * 1 2 3 27 27 H 1.09002 * 109.47162 * 306.51279 * 1 2 3 28 28 H 1.09000 * 109.47325 * 66.51387 * 1 2 3 29 29 H 1.08993 * 109.47117 * 240.00291 * 2 1 3 30 30 H 1.09005 * 109.47339 * 119.99940 * 2 1 3 31 31 H 1.09002 * 109.47151 * 60.68356 * 4 3 2 32 32 H 1.09006 * 109.46638 * 180.68102 * 4 3 2 33 33 H 1.09000 * 109.47061 * 305.28060 * 5 4 3 34 34 H 1.09000 * 109.46931 * 65.28399 * 5 4 3 35 35 H 1.09006 * 109.46971 * 185.28083 * 5 4 3 36 36 H 1.08998 * 110.34414 * 0.02562 * 6 3 2 37 37 H 1.09004 * 110.42621 * 237.78694 * 6 3 2 38 38 H 1.09001 * 110.40296 * 217.34362 * 7 6 3 39 39 H 1.09001 * 110.50892 * 94.96390 * 7 6 3 40 40 H 0.97002 * 120.00165 * 0.02562 * 11 9 8 41 41 H 1.09006 * 109.46992 * 299.99920 * 12 11 9 42 42 H 1.09004 * 109.47217 * 59.99963 * 12 11 9 43 43 H 1.09008 * 109.47387 * 59.99700 * 14 13 12 44 44 H 1.09001 * 109.47451 * 179.97438 * 14 13 12 45 45 H 1.09004 * 109.47210 * 299.99784 * 14 13 12 46 46 H 1.08996 * 109.47252 * 60.00374 * 15 13 12 47 47 H 1.09001 * 109.46769 * 180.02562 * 15 13 12 48 48 H 1.09001 * 109.47221 * 299.99811 * 15 13 12 49 49 H 1.09006 * 109.46795 * 299.99605 * 16 13 12 50 50 H 1.08992 * 109.47581 * 59.99384 * 16 13 12 51 51 H 0.96997 * 120.00075 * 179.97438 * 20 19 17 52 52 H 1.08994 * 110.40516 * 78.93915 * 25 8 7 53 53 H 1.09000 * 110.40854 * 201.37151 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5111 2.1927 -1.2241 5 6 1.9769 1.4835 -2.4973 6 6 1.6128 2.1624 1.2962 7 6 2.9357 2.5579 1.9869 8 7 3.9357 1.6038 1.4536 9 6 4.9384 0.9983 2.1204 10 8 5.6824 0.2343 1.5364 11 7 5.1162 1.2398 3.4343 12 6 6.2064 0.5821 4.1589 13 6 6.1857 1.0249 5.6233 14 6 6.3650 2.5424 5.6998 15 6 4.8470 0.6371 6.2544 16 6 7.3247 0.3385 6.3799 17 6 7.3037 0.7742 7.8224 18 1 6.5534 1.4713 8.1652 19 6 8.2426 0.2829 8.7046 20 7 8.2247 0.6634 9.9633 21 14 9.5399 -0.9234 8.1120 22 1 10.7345 -0.1754 7.6444 23 1 9.9254 -1.8237 9.2281 24 1 8.9913 -1.7300 6.9923 25 6 3.5875 1.4711 0.0198 26 1 -0.3634 -1.0210 0.1167 27 1 -0.3633 0.6115 0.8260 28 1 -0.3634 0.4095 -0.9425 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.4216 2.2110 -1.1962 32 1 1.8920 3.2140 -1.2169 33 1 3.0620 1.3819 -2.4803 34 1 1.5201 0.4952 -2.5505 35 1 1.6802 2.0682 -3.3681 36 1 1.0401 1.4882 1.9329 37 1 1.0269 3.0513 1.0622 38 1 2.8468 2.4506 3.0679 39 1 3.2106 3.5805 1.7285 40 1 4.5224 1.8490 3.9003 41 1 6.0784 -0.4991 4.1048 42 1 7.1602 0.8580 3.7090 43 1 5.5539 3.0318 5.1606 44 1 6.3498 2.8580 6.7430 45 1 7.3188 2.8187 5.2502 46 1 4.7192 -0.4440 6.1999 47 1 4.8320 0.9530 7.2975 48 1 4.0358 1.1265 5.7153 49 1 7.1973 -0.7427 6.3255 50 1 8.2782 0.6150 5.9302 51 1 8.8849 0.3175 10.5841 52 1 3.9615 2.3264 -0.5429 53 1 3.9909 0.5429 -0.3850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358697163.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:13 Heat of formation + Delta-G solvation = -55.772040 kcal Electronic energy + Delta-G solvation = -27151.467282 eV Core-core repulsion = 23636.139472 eV Total energy + Delta-G solvation = -3515.327810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58277 -38.94381 -37.14130 -35.00242 -33.51401 -32.05196 -31.67659 -30.31877 -28.53259 -27.72604 -26.54286 -26.17815 -24.43962 -23.64860 -22.66151 -22.21300 -19.88032 -18.92982 -18.52469 -17.44791 -16.79141 -16.14979 -15.92261 -15.56974 -15.20796 -14.57923 -14.51664 -14.08861 -13.94112 -13.60162 -13.50047 -13.34138 -13.19718 -12.75283 -12.71066 -12.66509 -12.40002 -12.25332 -12.21097 -12.03733 -11.96770 -11.45373 -11.34126 -11.22903 -11.10391 -10.99590 -10.76588 -10.62536 -10.60057 -10.55866 -10.45626 -10.05412 -9.95220 -9.73162 -9.49737 -8.97928 -8.96490 -8.52381 -8.47392 -6.03141 -4.00234 2.66091 3.33049 3.35319 3.40950 3.45636 4.00757 4.26207 4.30274 4.40150 4.47120 4.77060 4.79037 4.91124 5.01210 5.07320 5.12430 5.25854 5.29752 5.30375 5.35085 5.41028 5.43333 5.52709 5.56832 5.58838 5.63239 5.66166 5.68787 5.73106 5.81344 5.87412 5.91209 5.94495 6.09916 6.13905 6.15359 6.19345 6.27490 6.35108 6.53583 6.61110 6.76316 6.94199 7.02704 7.06169 7.15743 7.22555 7.38884 7.79412 8.12528 8.53943 8.76332 9.00870 9.59719 11.09581 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.002638 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.703780 B =10611.894879 C =10817.747742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.071 4.071 4 C -0.109 4.109 5 C -0.157 4.157 6 C -0.126 4.126 7 C 0.101 3.899 8 N -0.644 5.644 9 C 0.724 3.276 10 O -0.593 6.593 11 N -0.735 5.735 12 C 0.145 3.855 13 C -0.062 4.062 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.002 4.002 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C 0.134 3.866 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.029 0.971 49 H 0.019 0.981 50 H 0.014 0.986 51 H 0.262 0.738 52 H 0.067 0.933 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 4.599 -21.890 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.072 4.072 4 C -0.146 4.146 5 C -0.214 4.214 6 C -0.164 4.164 7 C -0.023 4.023 8 N -0.383 5.383 9 C 0.426 3.574 10 O -0.472 6.472 11 N -0.390 5.390 12 C 0.021 3.979 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.184 4.184 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.011 3.989 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.037 0.963 50 H 0.032 0.968 51 H 0.072 0.928 52 H 0.085 0.915 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.478 3.932 -22.054 27.810 hybrid contribution 0.506 -0.303 0.118 0.602 sum -15.972 3.629 -21.936 27.376 Atomic orbital electron populations 1.21843 0.95750 1.01573 1.01838 1.21573 0.95812 0.94947 1.02400 1.21630 0.94655 0.95997 0.94961 1.21607 1.00892 0.98744 0.93394 1.21860 1.01707 1.00761 0.97106 1.22680 0.96754 1.00741 0.96258 1.22314 0.87949 0.93087 0.98903 1.48011 1.31545 1.48020 1.10740 1.15419 0.79999 0.80311 0.81657 1.90911 1.47493 1.40655 1.68133 1.45327 1.35564 1.50557 1.07595 1.21505 0.88217 0.96562 0.91600 1.20694 0.97945 0.96325 0.91330 1.21765 0.99473 0.94594 1.02635 1.21754 0.94516 1.00434 1.01708 1.19591 0.92523 0.95655 0.96227 1.21076 1.15090 1.27227 0.91379 0.90411 1.24999 0.97466 0.96206 0.94792 1.69900 1.36240 1.44781 1.03435 0.86857 0.82431 0.81863 0.78627 1.20378 1.21530 1.18946 1.22310 0.93072 1.02332 0.81208 0.92926 0.92502 0.92581 0.91588 0.91828 0.91342 0.91790 0.92423 0.92390 0.92847 0.90558 0.90301 0.90796 0.91274 0.77027 0.92067 0.92047 0.95183 0.90914 0.93395 0.93400 0.90911 0.95211 0.96321 0.96758 0.92815 0.91531 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.21 37.16 0.34 -0.64 16 2 C -0.11 -0.87 4.36 -26.73 -0.12 -0.98 16 3 C -0.07 -0.52 0.49 -152.89 -0.07 -0.60 16 4 C -0.11 -0.62 4.28 -26.73 -0.11 -0.74 16 5 C -0.16 -0.92 9.29 37.16 0.35 -0.57 16 6 C -0.13 -0.86 5.69 -25.33 -0.14 -1.01 16 7 C 0.10 0.86 6.91 -2.41 -0.02 0.85 16 8 N -0.64 -7.79 3.31 -174.77 -0.58 -8.36 16 9 C 0.72 11.68 8.57 -86.92 -0.74 10.93 16 10 O -0.59 -11.99 16.61 5.29 0.09 -11.90 16 11 N -0.73 -11.11 4.94 -65.22 -0.32 -11.44 16 12 C 0.14 2.54 4.56 -4.04 -0.02 2.53 16 13 C -0.06 -1.16 0.54 -154.51 -0.08 -1.25 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 17 C -0.51 -13.70 8.20 -34.44 -0.28 -13.98 16 18 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 21 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 25 C 0.13 1.36 5.04 -2.19 -0.01 1.34 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.35 6.59 -51.93 -0.34 0.01 16 28 H 0.06 0.31 6.86 -51.93 -0.36 -0.04 16 29 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.35 6.68 -51.93 -0.35 0.01 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 7.16 -51.93 -0.37 0.00 16 34 H 0.06 0.34 6.82 -51.93 -0.35 -0.02 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.55 6.69 -51.93 -0.35 0.20 16 37 H 0.08 0.41 7.72 -51.93 -0.40 0.01 16 38 H 0.07 0.61 6.87 -51.93 -0.36 0.25 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.39 5.14 4.56 -40.82 -0.19 4.95 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.03 0.43 6.86 -51.92 -0.36 0.08 16 44 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 48 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 49 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 50 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 51 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 52 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 53 H 0.08 0.97 7.61 -51.93 -0.40 0.57 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -31.90 390.15 -8.99 -40.89 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -9.66 Total: 0.79 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.51 Total: -6.32 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.13 Total: -46.34 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.90 -8.99 -40.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358697163.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.881 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds