Wall clock time and date at job start Fri Apr 10 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47166 * 2 1 4 4 C 1.52996 * 110.30324 * 301.45157 * 3 2 1 5 5 C 1.52999 * 109.46946 * 300.67859 * 4 3 2 6 6 C 1.54293 * 110.33756 * 63.62536 * 3 2 1 7 7 C 1.54391 * 104.95684 * 118.87391 * 6 3 2 8 8 N 1.48139 * 104.61810 * 336.12857 * 7 6 3 9 9 C 1.34776 * 127.83800 * 219.59042 * 8 7 6 10 10 O 1.21590 * 119.99924 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99988 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00035 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47395 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46786 * 299.99879 * 13 12 11 15 15 C 1.52996 * 109.46867 * 59.99740 * 13 12 11 16 16 C 1.52999 * 109.47280 * 180.02562 * 13 12 11 17 17 C 1.50695 * 109.46804 * 180.02562 * 16 13 12 18 18 H 1.08003 * 120.00680 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99848 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00135 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46832 * 90.00460 * 21 19 17 23 23 H 1.48490 * 109.47231 * 210.00263 * 21 19 17 24 24 H 1.48497 * 109.47243 * 330.00510 * 21 19 17 25 25 C 1.48151 * 104.32579 * 39.84815 * 8 7 6 26 26 H 1.08998 * 109.47306 * 186.51866 * 1 2 3 27 27 H 1.09002 * 109.47162 * 306.51279 * 1 2 3 28 28 H 1.09000 * 109.47325 * 66.51387 * 1 2 3 29 29 H 1.08993 * 109.47117 * 240.00291 * 2 1 3 30 30 H 1.09005 * 109.47339 * 119.99940 * 2 1 3 31 31 H 1.09002 * 109.47151 * 60.68356 * 4 3 2 32 32 H 1.09006 * 109.46638 * 180.68102 * 4 3 2 33 33 H 1.09000 * 109.47061 * 305.28060 * 5 4 3 34 34 H 1.09000 * 109.46931 * 65.28399 * 5 4 3 35 35 H 1.09006 * 109.46971 * 185.28083 * 5 4 3 36 36 H 1.08998 * 110.34414 * 0.02562 * 6 3 2 37 37 H 1.09004 * 110.42621 * 237.78694 * 6 3 2 38 38 H 1.09001 * 110.40296 * 217.34362 * 7 6 3 39 39 H 1.09001 * 110.50892 * 94.96390 * 7 6 3 40 40 H 0.97002 * 120.00165 * 0.02562 * 11 9 8 41 41 H 1.09006 * 109.46992 * 299.99920 * 12 11 9 42 42 H 1.09004 * 109.47217 * 59.99963 * 12 11 9 43 43 H 1.09008 * 109.47387 * 59.99700 * 14 13 12 44 44 H 1.09001 * 109.47451 * 179.97438 * 14 13 12 45 45 H 1.09004 * 109.47210 * 299.99784 * 14 13 12 46 46 H 1.08996 * 109.47252 * 60.00374 * 15 13 12 47 47 H 1.09001 * 109.46769 * 180.02562 * 15 13 12 48 48 H 1.09001 * 109.47221 * 299.99811 * 15 13 12 49 49 H 1.09006 * 109.46795 * 299.99605 * 16 13 12 50 50 H 1.08992 * 109.47581 * 59.99384 * 16 13 12 51 51 H 0.96997 * 120.00075 * 179.97438 * 20 19 17 52 52 H 1.08994 * 110.40516 * 78.93915 * 25 8 7 53 53 H 1.09000 * 110.40854 * 201.37151 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5111 2.1927 -1.2241 5 6 1.9769 1.4835 -2.4973 6 6 1.6128 2.1624 1.2962 7 6 2.9357 2.5579 1.9869 8 7 3.9357 1.6038 1.4536 9 6 4.9384 0.9983 2.1204 10 8 5.6824 0.2343 1.5364 11 7 5.1162 1.2398 3.4343 12 6 6.2064 0.5821 4.1589 13 6 6.1857 1.0249 5.6233 14 6 6.3650 2.5424 5.6998 15 6 4.8470 0.6371 6.2544 16 6 7.3247 0.3385 6.3799 17 6 7.3037 0.7742 7.8224 18 1 6.5534 1.4713 8.1652 19 6 8.2426 0.2829 8.7046 20 7 8.2247 0.6634 9.9633 21 14 9.5399 -0.9234 8.1120 22 1 10.7345 -0.1754 7.6444 23 1 9.9254 -1.8237 9.2281 24 1 8.9913 -1.7300 6.9923 25 6 3.5875 1.4711 0.0198 26 1 -0.3634 -1.0210 0.1167 27 1 -0.3633 0.6115 0.8260 28 1 -0.3634 0.4095 -0.9425 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.4216 2.2110 -1.1962 32 1 1.8920 3.2140 -1.2169 33 1 3.0620 1.3819 -2.4803 34 1 1.5201 0.4952 -2.5505 35 1 1.6802 2.0682 -3.3681 36 1 1.0401 1.4882 1.9329 37 1 1.0269 3.0513 1.0622 38 1 2.8468 2.4506 3.0679 39 1 3.2106 3.5805 1.7285 40 1 4.5224 1.8490 3.9003 41 1 6.0784 -0.4991 4.1048 42 1 7.1602 0.8580 3.7090 43 1 5.5539 3.0318 5.1606 44 1 6.3498 2.8580 6.7430 45 1 7.3188 2.8187 5.2502 46 1 4.7192 -0.4440 6.1999 47 1 4.8320 0.9530 7.2975 48 1 4.0358 1.1265 5.7153 49 1 7.1973 -0.7427 6.3255 50 1 8.2782 0.6150 5.9302 51 1 8.8849 0.3175 10.5841 52 1 3.9615 2.3264 -0.5429 53 1 3.9909 0.5429 -0.3850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358697163.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:13 Heat of formation + Delta-G solvation = -74.170791 kcal Electronic energy + Delta-G solvation = -27152.265112 eV Core-core repulsion = 23636.139472 eV Total energy + Delta-G solvation = -3516.125640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54037 -39.99560 -38.60313 -35.87116 -35.13698 -33.91262 -32.18777 -31.09970 -29.81147 -29.11507 -28.00364 -27.43300 -25.42218 -24.35092 -23.92748 -23.24856 -21.07731 -20.00731 -19.49366 -18.92436 -18.57624 -17.15902 -17.02804 -16.26342 -16.21960 -16.04306 -15.55651 -15.46647 -15.31080 -14.93258 -14.74537 -14.23548 -14.19724 -14.02748 -13.89650 -13.70118 -13.44699 -13.32074 -12.97250 -12.88652 -12.85067 -12.66888 -12.62826 -12.53213 -12.31494 -12.16904 -12.00922 -11.87705 -11.77858 -11.53282 -11.41629 -11.35020 -11.20338 -11.11158 -11.10121 -10.91731 -10.70588 -10.23757 -9.51160 -8.22588 -6.22410 1.35468 1.38396 1.48553 1.58321 2.12639 2.38914 3.03115 3.12828 3.54252 3.66636 3.80230 3.90736 4.04906 4.14181 4.20477 4.23158 4.33189 4.46701 4.52226 4.56415 4.62057 4.65456 4.69039 4.70851 4.72719 4.76179 4.91118 4.93213 4.94234 4.97486 5.00727 5.08066 5.11002 5.11993 5.14464 5.28322 5.29714 5.32688 5.35416 5.37095 5.39534 5.41846 5.48951 5.52117 5.55884 5.66596 5.68125 5.75771 6.08447 6.37863 6.83960 6.99322 7.40242 7.55043 8.92881 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.002638 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.703780 B =10611.894879 C =10817.747742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.063 4.063 4 C -0.103 4.103 5 C -0.158 4.158 6 C -0.120 4.120 7 C 0.094 3.906 8 N -0.643 5.643 9 C 0.718 3.282 10 O -0.642 6.642 11 N -0.725 5.725 12 C 0.159 3.841 13 C -0.056 4.056 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.004 4.004 17 C -0.500 4.500 18 H 0.054 0.946 19 C 0.007 3.993 20 N -0.950 5.950 21 Si 0.932 3.068 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.253 1.253 25 C 0.130 3.870 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.406 0.594 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.014 0.986 50 H 0.013 0.987 51 H 0.263 0.737 52 H 0.078 0.922 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 5.727 -23.930 31.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.064 4.064 4 C -0.140 4.140 5 C -0.216 4.216 6 C -0.158 4.158 7 C -0.028 4.028 8 N -0.380 5.380 9 C 0.420 3.580 10 O -0.524 6.524 11 N -0.381 5.381 12 C 0.034 3.966 13 C -0.057 4.057 14 C -0.179 4.179 15 C -0.178 4.178 16 C -0.042 4.042 17 C -0.538 4.538 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.592 5.592 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.177 1.177 25 C 0.007 3.993 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.244 0.756 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.032 0.968 50 H 0.031 0.969 51 H 0.072 0.928 52 H 0.096 0.904 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.482 5.099 -24.115 30.808 hybrid contribution 1.035 -0.608 0.706 1.393 sum -17.447 4.491 -23.409 29.539 Atomic orbital electron populations 1.21806 0.94212 1.01696 1.02774 1.21539 0.97075 0.95157 1.00867 1.21579 0.92380 0.95976 0.96438 1.21592 1.01656 0.98745 0.92038 1.21867 1.00974 1.00934 0.97789 1.22696 0.96005 1.01704 0.95398 1.22635 0.87639 0.93027 0.99511 1.48060 1.30773 1.47627 1.11582 1.15570 0.80483 0.80231 0.81682 1.90874 1.49595 1.42873 1.69086 1.45030 1.35114 1.50555 1.07413 1.21134 0.88703 0.96009 0.90761 1.20549 0.96859 0.96711 0.91565 1.21684 1.00821 0.93838 1.01540 1.21673 0.95067 1.00503 1.00589 1.19567 0.94414 0.95715 0.94468 1.21343 1.13619 1.25673 0.93187 0.92786 1.25808 0.99934 0.98310 0.94928 1.70031 1.37611 1.46778 1.04759 0.85920 0.80026 0.79893 0.78390 1.19723 1.21404 1.17722 1.22496 0.95177 1.01548 0.80128 0.93280 0.91820 0.91318 0.92133 0.94478 0.89895 0.90820 0.93566 0.92642 0.91881 0.90660 0.87600 0.90159 0.89414 0.75574 0.93252 0.93064 0.91594 0.93334 0.93713 0.93817 0.93312 0.91635 0.96762 0.96855 0.92848 0.90410 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.21 71.98 0.66 -0.90 16 2 C -0.11 -1.59 4.36 30.60 0.13 -1.46 16 3 C -0.06 -0.78 0.49 -51.13 -0.03 -0.80 16 4 C -0.10 -0.85 4.28 30.59 0.13 -0.72 16 5 C -0.16 -1.54 9.29 71.98 0.67 -0.87 16 6 C -0.12 -1.22 5.69 31.51 0.18 -1.04 16 7 C 0.09 1.30 6.91 86.54 0.60 1.90 16 8 N -0.64 -14.53 3.31 -825.11 -2.73 -17.26 16 9 C 0.72 22.59 8.57 179.05 1.53 24.12 16 10 O -0.64 -26.23 16.61 -4.00 -0.07 -26.30 16 11 N -0.72 -20.71 4.94 -478.52 -2.36 -23.07 16 12 C 0.16 5.44 4.56 86.38 0.39 5.83 16 13 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 14 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 15 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 16 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 17 C -0.50 -27.29 8.20 25.60 0.21 -27.08 16 18 H 0.05 3.15 5.92 -2.91 -0.02 3.14 16 19 C 0.01 0.38 5.47 84.66 0.46 0.84 16 20 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 21 Si 0.93 44.91 27.47 68.60 1.88 46.80 16 22 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 25 C 0.13 2.47 5.04 86.67 0.44 2.90 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.60 6.59 -2.39 -0.02 0.58 16 28 H 0.07 0.57 6.86 -2.39 -0.02 0.55 16 29 H 0.06 0.93 6.70 -2.39 -0.02 0.92 16 30 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.51 6.68 -2.39 -0.02 0.49 16 32 H 0.07 0.52 8.13 -2.38 -0.02 0.50 16 33 H 0.05 0.55 7.16 -2.39 -0.02 0.53 16 34 H 0.05 0.56 6.82 -2.39 -0.02 0.55 16 35 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.07 0.83 6.69 -2.39 -0.02 0.81 16 37 H 0.11 0.58 7.72 -2.38 -0.02 0.56 16 38 H 0.08 1.02 6.87 -2.39 -0.02 1.00 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.41 9.40 4.56 -92.71 -0.42 8.97 16 41 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.07 1.73 6.86 -2.38 -0.02 1.72 16 44 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 45 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 48 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 49 H 0.01 0.66 7.20 -2.38 -0.02 0.64 16 50 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 51 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 52 H 0.08 1.31 7.82 -2.39 -0.02 1.29 16 53 H 0.06 1.37 7.61 -2.39 -0.02 1.35 16 Total: -1.00 -71.29 390.15 4.03 -67.26 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.39 Total: 17.52 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 6.61 Total: -6.51 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -4.79 Total: -98.76 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.07 Total: -26.30 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -71.29 4.03 -67.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358697163.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.912 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds