Wall clock time and date at job start Fri Apr 10 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 C 1.52996 * 109.47112 * 240.00092 * 2 1 3 5 5 C 1.50707 * 109.47286 * 60.00118 * 4 2 1 6 6 H 1.08005 * 119.99486 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00067 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47344 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47341 * 120.00004 * 9 7 5 12 12 H 1.48507 * 109.47252 * 239.99712 * 9 7 5 13 13 C 1.52991 * 109.47123 * 119.99863 * 2 1 3 14 14 N 1.46505 * 109.47459 * 300.00055 * 13 2 1 15 15 C 1.34773 * 120.00177 * 180.02562 * 14 13 2 16 16 O 1.21591 * 120.00135 * 4.90125 * 15 14 13 17 17 N 1.34776 * 120.00192 * 184.90318 * 15 14 13 18 18 C 1.47414 * 118.49551 * 354.66516 * 17 15 14 19 19 C 1.51024 * 106.57127 * 100.86592 * 18 17 15 20 20 C 1.52844 * 112.18260 * 90.03047 * 19 18 17 21 21 C 1.53843 * 113.05485 * 318.06752 * 20 19 18 22 22 C 1.53002 * 108.61782 * 78.20208 * 21 20 19 23 23 C 1.53005 * 108.61739 * 196.10861 * 21 20 19 24 24 C 1.50979 * 113.77579 * 317.07594 * 21 20 19 25 25 C 1.40511 * 118.49747 * 174.63587 * 17 15 14 26 26 H 1.09005 * 109.47523 * 300.00082 * 1 2 3 27 27 H 1.09005 * 109.47393 * 59.99799 * 1 2 3 28 28 H 1.09005 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47396 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47199 * 300.00320 * 3 2 1 31 31 H 1.09000 * 109.47377 * 59.99967 * 3 2 1 32 32 H 1.08999 * 109.47437 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47444 * 300.00175 * 4 2 1 34 34 H 0.97002 * 120.00027 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47386 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47121 * 60.00289 * 13 2 1 37 37 H 0.97002 * 119.99450 * 0.02562 * 14 13 2 38 38 H 1.08991 * 110.03033 * 220.13643 * 18 17 15 39 39 H 1.09001 * 110.02587 * 341.50742 * 18 17 15 40 40 H 1.08998 * 108.94351 * 210.73008 * 19 18 17 41 41 H 1.09007 * 108.94408 * 329.33745 * 19 18 17 42 42 H 1.08996 * 108.76388 * 78.98914 * 20 19 18 43 43 H 1.09000 * 108.76556 * 197.14299 * 20 19 18 44 44 H 1.09003 * 109.47035 * 42.43965 * 22 21 20 45 45 H 1.09004 * 109.47134 * 162.43692 * 22 21 20 46 46 H 1.08993 * 109.47209 * 282.43420 * 22 21 20 47 47 H 1.09000 * 109.46759 * 59.99927 * 23 21 20 48 48 H 1.08998 * 109.47006 * 180.02562 * 23 21 20 49 49 H 1.08993 * 109.47237 * 300.00448 * 23 21 20 50 50 H 1.08998 * 109.60464 * 333.26556 * 24 21 20 51 51 H 1.08997 * 109.58278 * 212.80972 * 24 21 20 52 52 H 1.09003 * 109.35743 * 359.32959 * 25 17 15 53 53 H 1.09005 * 109.35130 * 118.89322 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6255 -1.5520 -3.8527 9 14 1.2471 0.3981 -5.2572 10 1 0.4217 1.5645 -4.8530 11 1 2.4017 0.8646 -6.0660 12 1 0.4218 -0.5355 -6.0651 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6695 16 8 2.6485 -1.4242 3.7827 17 7 1.3492 0.0838 4.7682 18 6 0.5137 1.2866 4.6001 19 6 -0.9227 0.8298 4.6944 20 6 -1.4476 0.8684 6.1294 21 6 -0.4285 0.3480 7.1578 22 6 0.6051 1.4453 7.4195 23 6 -1.1638 0.0492 8.4659 24 6 0.2954 -0.9020 6.7184 25 6 1.6194 -0.4915 6.0213 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 -0.7208 -1.2495 33 1 1.6766 -1.7488 -1.2493 34 1 2.8599 -1.8834 -4.7337 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2492 37 1 0.9936 0.7579 2.3564 38 1 0.7298 2.0047 5.3910 39 1 0.7004 1.7376 3.6255 40 1 -1.5415 1.4779 4.0738 41 1 -0.9949 -0.1909 4.3187 42 1 -1.7054 1.8971 6.3809 43 1 -2.3491 0.2586 6.1895 44 1 0.0999 2.4073 7.5053 45 1 1.1366 1.2301 8.3466 46 1 1.3152 1.4801 6.5934 47 1 -1.9297 -0.7056 8.2879 48 1 -0.4536 -0.3205 9.2055 49 1 -1.6318 0.9613 8.8361 50 1 -0.3282 -1.4593 6.0196 51 1 0.5167 -1.5207 7.5881 52 1 2.2453 -1.3737 5.8865 53 1 2.1468 0.2310 6.6443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358701171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:16 Heat of formation + Delta-G solvation = -25.611290 kcal Electronic energy + Delta-G solvation = -27755.345366 eV Core-core repulsion = 24241.325424 eV Total energy + Delta-G solvation = -3514.019942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22024 -38.93287 -37.14620 -35.05165 -33.80476 -32.76929 -31.97476 -29.03127 -28.16310 -27.07260 -26.49912 -26.36241 -26.04139 -23.75458 -22.76134 -21.85633 -19.63205 -18.92795 -18.39765 -17.59121 -16.50292 -16.24563 -16.15727 -15.12655 -14.91149 -14.79161 -14.64284 -14.30431 -14.14884 -13.70846 -13.38350 -13.30086 -12.99368 -12.95122 -12.70848 -12.47490 -12.24665 -12.05984 -12.02839 -11.87210 -11.60780 -11.42784 -11.13823 -11.01707 -10.91281 -10.83072 -10.70431 -10.63445 -10.49809 -10.41636 -10.36794 -10.21970 -9.86177 -9.85955 -9.18699 -8.90121 -8.81067 -8.35317 -8.31320 -5.99021 -4.00147 2.89486 3.30471 3.38513 3.38612 3.40804 4.03328 4.39783 4.45434 4.47294 4.48958 4.70360 4.81595 5.03624 5.03689 5.20642 5.23496 5.33550 5.36610 5.41135 5.45887 5.46996 5.52973 5.56694 5.66822 5.67665 5.74351 5.76765 5.77779 5.78606 5.93799 5.96029 6.03343 6.14674 6.19064 6.22339 6.24421 6.30934 6.43829 6.62760 6.64161 6.75302 6.85489 7.06780 7.08926 7.09009 7.16908 7.66183 7.78583 7.99908 8.13808 8.41844 8.82689 9.04925 9.62886 11.12508 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.002794 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.748315 B =10020.640917 C =10445.803543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.145 3.855 14 N -0.736 5.736 15 C 0.695 3.305 16 O -0.593 6.593 17 N -0.619 5.619 18 C 0.096 3.904 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.064 4.064 22 C -0.172 4.172 23 C -0.142 4.142 24 C -0.125 4.125 25 C 0.114 3.886 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.071 0.929 52 H 0.094 0.906 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 7.380 23.442 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.022 3.978 14 N -0.393 5.393 15 C 0.396 3.604 16 O -0.471 6.471 17 N -0.356 5.356 18 C -0.026 4.026 19 C -0.179 4.179 20 C -0.140 4.140 21 C -0.064 4.064 22 C -0.228 4.228 23 C -0.199 4.199 24 C -0.164 4.164 25 C -0.012 4.012 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.231 0.769 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.112 0.888 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.132 6.575 23.397 25.328 hybrid contribution -0.717 0.771 -0.945 1.415 sum -7.848 7.345 22.452 24.892 Atomic orbital electron populations 1.21746 0.95352 1.01106 1.00048 1.20900 0.95408 0.95830 0.95095 1.21749 1.00578 0.95935 1.00023 1.19094 0.96403 0.95240 0.89445 1.21221 1.31045 1.12015 0.90504 0.92228 1.25017 0.95359 0.95089 0.99087 1.69976 1.37061 1.23024 1.23306 0.86599 0.78597 0.79665 0.83488 1.19820 1.21148 1.21158 1.21487 0.98761 0.95543 0.82056 1.45569 1.56037 1.33132 1.04607 1.16118 0.80850 0.82372 0.81029 1.90891 1.39031 1.31556 1.85622 1.45869 1.54216 1.29631 1.05889 1.21802 0.90046 0.87935 1.02847 1.21685 0.96218 1.02789 0.97177 1.21708 0.97740 1.00935 0.93646 1.20322 0.95272 0.95587 0.95196 1.22773 0.99689 0.97903 1.02456 1.22013 1.00194 1.01206 0.96509 1.22087 0.97020 0.96774 1.00491 1.20847 0.96755 0.99684 0.83867 0.95428 0.91499 0.93394 0.93331 0.91472 0.95494 0.96295 0.96315 0.93107 0.92009 0.92156 0.76886 0.88440 0.90355 0.91205 0.91129 0.92083 0.92196 0.92946 0.92736 0.89750 0.92822 0.92657 0.92941 0.91418 0.91008 0.88764 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.37 0.54 -154.52 -0.08 -1.45 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.15 2.64 4.57 -4.04 -0.02 2.62 16 14 N -0.74 -11.14 4.82 -65.23 -0.31 -11.45 16 15 C 0.69 11.03 8.18 -86.92 -0.71 10.32 16 16 O -0.59 -11.85 15.46 5.29 0.08 -11.77 16 17 N -0.62 -7.25 2.33 -182.97 -0.43 -7.68 16 18 C 0.10 0.84 5.37 -4.54 -0.02 0.82 16 19 C -0.14 -1.15 5.35 -27.80 -0.15 -1.30 16 20 C -0.10 -0.74 4.76 -26.37 -0.13 -0.87 16 21 C -0.06 -0.46 0.71 -155.08 -0.11 -0.57 16 22 C -0.17 -1.16 6.25 37.16 0.23 -0.93 16 23 C -0.14 -0.92 7.98 37.16 0.30 -0.62 16 24 C -0.12 -1.10 5.11 -26.61 -0.14 -1.24 16 25 C 0.11 1.21 5.52 -6.00 -0.03 1.18 16 26 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.39 5.08 3.61 -40.82 -0.15 4.93 16 38 H 0.10 0.71 4.64 -51.93 -0.24 0.47 16 39 H 0.08 0.68 5.85 -51.93 -0.30 0.37 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.73 7.42 -51.92 -0.39 0.35 16 42 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 43 H 0.06 0.44 7.96 -51.93 -0.41 0.03 16 44 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 45 H 0.05 0.35 8.02 -51.93 -0.42 -0.06 16 46 H 0.08 0.64 2.81 -51.93 -0.15 0.49 16 47 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 48 H 0.05 0.34 7.96 -51.93 -0.41 -0.07 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.70 7.33 -51.93 -0.38 0.32 16 51 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 52 H 0.09 1.24 6.61 -51.93 -0.34 0.90 16 53 H 0.07 0.63 5.44 -51.93 -0.28 0.35 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -30.88 379.19 -9.27 -40.15 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.30 Total: 1.98 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.74 Total: -7.39 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.00 Total: -44.86 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.88 -9.27 -40.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358701171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.543 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds