Wall clock time and date at job start Fri Apr 10 2020 22:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 C 1.52996 * 109.47112 * 240.00092 * 2 1 3 5 5 C 1.50707 * 109.47286 * 60.00118 * 4 2 1 6 6 H 1.08005 * 119.99486 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00067 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47344 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47341 * 120.00004 * 9 7 5 12 12 H 1.48507 * 109.47252 * 239.99712 * 9 7 5 13 13 C 1.52991 * 109.47123 * 119.99863 * 2 1 3 14 14 N 1.46505 * 109.47459 * 300.00055 * 13 2 1 15 15 C 1.34773 * 120.00177 * 180.02562 * 14 13 2 16 16 O 1.21591 * 120.00135 * 4.90125 * 15 14 13 17 17 N 1.34776 * 120.00192 * 184.90318 * 15 14 13 18 18 C 1.47414 * 118.49551 * 354.66516 * 17 15 14 19 19 C 1.51024 * 106.57127 * 100.86592 * 18 17 15 20 20 C 1.52844 * 112.18260 * 90.03047 * 19 18 17 21 21 C 1.53843 * 113.05485 * 318.06752 * 20 19 18 22 22 C 1.53002 * 108.61782 * 78.20208 * 21 20 19 23 23 C 1.53005 * 108.61739 * 196.10861 * 21 20 19 24 24 C 1.50979 * 113.77579 * 317.07594 * 21 20 19 25 25 C 1.40511 * 118.49747 * 174.63587 * 17 15 14 26 26 H 1.09005 * 109.47523 * 300.00082 * 1 2 3 27 27 H 1.09005 * 109.47393 * 59.99799 * 1 2 3 28 28 H 1.09005 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47396 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47199 * 300.00320 * 3 2 1 31 31 H 1.09000 * 109.47377 * 59.99967 * 3 2 1 32 32 H 1.08999 * 109.47437 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47444 * 300.00175 * 4 2 1 34 34 H 0.97002 * 120.00027 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47386 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47121 * 60.00289 * 13 2 1 37 37 H 0.97002 * 119.99450 * 0.02562 * 14 13 2 38 38 H 1.08991 * 110.03033 * 220.13643 * 18 17 15 39 39 H 1.09001 * 110.02587 * 341.50742 * 18 17 15 40 40 H 1.08998 * 108.94351 * 210.73008 * 19 18 17 41 41 H 1.09007 * 108.94408 * 329.33745 * 19 18 17 42 42 H 1.08996 * 108.76388 * 78.98914 * 20 19 18 43 43 H 1.09000 * 108.76556 * 197.14299 * 20 19 18 44 44 H 1.09003 * 109.47035 * 42.43965 * 22 21 20 45 45 H 1.09004 * 109.47134 * 162.43692 * 22 21 20 46 46 H 1.08993 * 109.47209 * 282.43420 * 22 21 20 47 47 H 1.09000 * 109.46759 * 59.99927 * 23 21 20 48 48 H 1.08998 * 109.47006 * 180.02562 * 23 21 20 49 49 H 1.08993 * 109.47237 * 300.00448 * 23 21 20 50 50 H 1.08998 * 109.60464 * 333.26556 * 24 21 20 51 51 H 1.08997 * 109.58278 * 212.80972 * 24 21 20 52 52 H 1.09003 * 109.35743 * 359.32959 * 25 17 15 53 53 H 1.09005 * 109.35130 * 118.89322 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6255 -1.5520 -3.8527 9 14 1.2471 0.3981 -5.2572 10 1 0.4217 1.5645 -4.8530 11 1 2.4017 0.8646 -6.0660 12 1 0.4218 -0.5355 -6.0651 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6695 16 8 2.6485 -1.4242 3.7827 17 7 1.3492 0.0838 4.7682 18 6 0.5137 1.2866 4.6001 19 6 -0.9227 0.8298 4.6944 20 6 -1.4476 0.8684 6.1294 21 6 -0.4285 0.3480 7.1578 22 6 0.6051 1.4453 7.4195 23 6 -1.1638 0.0492 8.4659 24 6 0.2954 -0.9020 6.7184 25 6 1.6194 -0.4915 6.0213 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 -0.7208 -1.2495 33 1 1.6766 -1.7488 -1.2493 34 1 2.8599 -1.8834 -4.7337 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2492 37 1 0.9936 0.7579 2.3564 38 1 0.7298 2.0047 5.3910 39 1 0.7004 1.7376 3.6255 40 1 -1.5415 1.4779 4.0738 41 1 -0.9949 -0.1909 4.3187 42 1 -1.7054 1.8971 6.3809 43 1 -2.3491 0.2586 6.1895 44 1 0.0999 2.4073 7.5053 45 1 1.1366 1.2301 8.3466 46 1 1.3152 1.4801 6.5934 47 1 -1.9297 -0.7056 8.2879 48 1 -0.4536 -0.3205 9.2055 49 1 -1.6318 0.9613 8.8361 50 1 -0.3282 -1.4593 6.0196 51 1 0.5167 -1.5207 7.5881 52 1 2.2453 -1.3737 5.8865 53 1 2.1468 0.2310 6.6443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358701171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:15 Heat of formation + Delta-G solvation = -42.356249 kcal Electronic energy + Delta-G solvation = -27756.071482 eV Core-core repulsion = 24241.325424 eV Total energy + Delta-G solvation = -3514.746058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.18974 -40.01550 -38.63545 -36.02959 -35.30092 -34.07762 -33.38119 -29.93090 -28.99379 -28.72185 -27.95564 -27.43276 -27.04400 -25.12106 -24.07876 -22.82239 -20.81943 -20.11177 -19.11220 -18.96581 -18.35167 -17.46407 -17.13700 -16.50173 -16.06796 -15.86796 -15.64565 -15.46888 -15.33860 -15.07407 -14.66788 -14.44880 -14.01935 -13.99080 -13.92041 -13.76881 -13.54036 -13.02989 -12.90440 -12.82851 -12.68397 -12.59505 -12.55866 -12.34424 -12.30779 -12.21338 -12.04122 -11.91942 -11.61760 -11.53165 -11.49125 -11.18529 -11.11260 -10.97929 -10.92008 -10.82147 -10.51171 -10.15842 -9.32543 -8.12806 -6.20559 1.42750 1.43672 1.55461 1.76195 2.13009 2.45254 2.96904 3.21865 3.80114 3.81618 3.87826 3.96675 4.06075 4.10018 4.15306 4.23041 4.25278 4.40361 4.55404 4.57458 4.70184 4.72073 4.73771 4.76111 4.80164 4.85595 4.91314 4.96963 4.99782 5.01848 5.12302 5.13053 5.14404 5.15798 5.21337 5.27673 5.35126 5.40849 5.49121 5.49990 5.51027 5.54766 5.55478 5.59269 5.61040 5.81162 5.81638 5.91335 6.00553 6.31916 6.94093 6.98786 7.47169 7.59319 9.00103 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.002794 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.748315 B =10020.640917 C =10445.803543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.510 4.510 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.160 3.840 14 N -0.723 5.723 15 C 0.689 3.311 16 O -0.641 6.641 17 N -0.607 5.607 18 C 0.091 3.909 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.063 4.063 22 C -0.169 4.169 23 C -0.139 4.139 24 C -0.117 4.117 25 C 0.110 3.890 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.067 0.933 32 H -0.015 1.015 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.408 0.592 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.048 0.952 51 H 0.079 0.921 52 H 0.063 0.937 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 10.620 25.003 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.035 3.965 14 N -0.382 5.382 15 C 0.391 3.609 16 O -0.523 6.523 17 N -0.342 5.342 18 C -0.030 4.030 19 C -0.175 4.175 20 C -0.139 4.139 21 C -0.063 4.063 22 C -0.225 4.225 23 C -0.197 4.197 24 C -0.156 4.156 25 C -0.015 4.015 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.248 0.752 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.098 0.902 52 H 0.081 0.919 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.329 9.873 24.998 28.450 hybrid contribution -0.032 -0.278 -1.336 1.365 sum -9.360 9.595 23.663 27.195 Atomic orbital electron populations 1.21669 0.93521 1.00875 1.01545 1.20695 0.96731 0.96319 0.92584 1.21679 0.99908 0.94559 1.01570 1.18976 0.94288 0.94204 0.92356 1.21618 1.30252 1.12021 0.90940 0.90761 1.25965 0.95718 0.95879 1.02784 1.70136 1.38937 1.25025 1.24002 0.85480 0.78029 0.78839 0.79194 1.17860 1.21122 1.21150 1.21053 0.97430 0.94838 0.83160 1.45214 1.56099 1.33328 1.03527 1.16323 0.80664 0.82038 0.81891 1.90864 1.41265 1.33789 1.86349 1.45924 1.53452 1.30013 1.04837 1.22115 0.89769 0.86922 1.04179 1.21647 0.96023 1.01640 0.98239 1.21711 0.97431 1.01910 0.92812 1.20307 0.95486 0.94794 0.95690 1.22719 0.99328 0.98251 1.02250 1.21978 1.00093 1.01593 0.95991 1.22011 0.95729 0.97760 1.00051 1.20965 0.97671 0.99049 0.83792 0.91416 0.92362 0.94586 0.94486 0.92327 0.91410 0.99617 0.99645 0.93217 0.94078 0.94181 0.75200 0.86108 0.89687 0.89443 0.93563 0.90333 0.92441 0.91530 0.92350 0.90612 0.93182 0.92429 0.91980 0.93268 0.90225 0.91882 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.39 0.54 -52.19 -0.03 -2.42 16 3 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -27.29 7.65 25.60 0.20 -27.10 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 9 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.16 5.99 4.57 86.38 0.39 6.39 16 14 N -0.72 -21.28 4.82 -478.54 -2.31 -23.58 16 15 C 0.69 21.88 8.18 179.06 1.47 23.35 16 16 O -0.64 -26.65 15.46 -4.00 -0.06 -26.71 16 17 N -0.61 -13.50 2.33 -851.04 -1.99 -15.49 16 18 C 0.09 1.32 5.37 85.56 0.46 1.78 16 19 C -0.14 -1.85 5.35 29.90 0.16 -1.69 16 20 C -0.10 -1.14 4.76 30.83 0.15 -0.99 16 21 C -0.06 -0.74 0.71 -52.55 -0.04 -0.78 16 22 C -0.17 -1.70 6.25 71.98 0.45 -1.25 16 23 C -0.14 -1.42 7.98 71.98 0.57 -0.85 16 24 C -0.12 -1.93 5.11 30.68 0.16 -1.78 16 25 C 0.11 2.27 5.52 88.20 0.49 2.76 16 26 H 0.07 1.71 6.86 -2.38 -0.02 1.70 16 27 H 0.06 2.07 6.62 -2.38 -0.02 2.05 16 28 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 31 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 9.39 3.61 -92.71 -0.34 9.06 16 38 H 0.12 1.27 4.64 -2.39 -0.01 1.26 16 39 H 0.08 1.13 5.85 -2.39 -0.01 1.12 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.05 0.88 7.42 -2.38 -0.02 0.86 16 42 H 0.08 0.65 7.69 -2.39 -0.02 0.63 16 43 H 0.06 0.70 7.96 -2.39 -0.02 0.68 16 44 H 0.07 0.52 7.70 -2.39 -0.02 0.50 16 45 H 0.06 0.57 8.02 -2.38 -0.02 0.55 16 46 H 0.08 0.89 2.81 -2.39 -0.01 0.88 16 47 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 48 H 0.06 0.57 7.96 -2.39 -0.02 0.55 16 49 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.05 1.00 7.33 -2.39 -0.02 0.98 16 51 H 0.08 1.19 7.60 -2.39 -0.02 1.17 16 52 H 0.06 1.73 6.61 -2.39 -0.02 1.71 16 53 H 0.09 1.50 5.44 -2.38 -0.01 1.49 16 Total: -1.00 -70.70 379.19 4.68 -66.03 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.55 Total: 18.60 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 6.17 Total: -7.21 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.01 Total: -96.29 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.70 4.68 -66.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358701171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.672 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds