Wall clock time and date at job start Fri Apr 10 2020 22:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46767 * 2 1 4 4 C 1.53000 * 109.45862 * 60.02801 * 3 2 1 5 5 C 1.53042 * 109.46369 * 300.07475 * 3 2 1 6 6 C 1.53195 * 109.31359 * 178.61581 * 5 3 2 7 7 N 1.46928 * 108.77467 * 54.63132 * 6 5 3 8 8 C 1.34773 * 120.62702 * 126.41611 * 7 6 5 9 9 O 1.21593 * 119.99741 * 174.93772 * 8 7 6 10 10 N 1.34777 * 120.00281 * 354.94227 * 8 7 6 11 11 C 1.46496 * 119.99703 * 185.07544 * 10 8 7 12 12 C 1.53005 * 109.47128 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46983 * 300.00299 * 12 11 10 14 14 C 1.53001 * 109.46523 * 59.99778 * 12 11 10 15 15 C 1.52996 * 109.47503 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47214 * 180.02562 * 15 12 11 17 17 H 1.07994 * 120.00233 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99544 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99679 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00668 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46814 * 89.99904 * 20 18 16 22 22 H 1.48501 * 109.47114 * 210.00319 * 20 18 16 23 23 H 1.48500 * 109.46726 * 330.00151 * 20 18 16 24 24 C 1.46928 * 118.73864 * 306.38625 * 7 6 5 25 25 C 1.53035 * 109.46033 * 179.97438 * 3 2 1 26 26 H 1.09006 * 109.46341 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47499 * 299.99297 * 1 2 3 28 28 H 1.09000 * 109.47571 * 60.00012 * 1 2 3 29 29 H 1.08988 * 109.47228 * 120.00280 * 2 1 3 30 30 H 1.08998 * 109.46852 * 240.00972 * 2 1 3 31 31 H 1.09003 * 109.46881 * 60.00073 * 4 3 2 32 32 H 1.09006 * 109.47478 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47480 * 300.00117 * 4 3 2 34 34 H 1.09004 * 109.49351 * 298.56231 * 5 3 2 35 35 H 1.08993 * 109.49777 * 58.65692 * 5 3 2 36 36 H 1.08996 * 109.58286 * 294.83924 * 6 5 3 37 37 H 1.08996 * 109.58536 * 174.41726 * 6 5 3 38 38 H 0.96997 * 120.00176 * 5.06692 * 10 8 7 39 39 H 1.09003 * 109.47471 * 299.99265 * 11 10 8 40 40 H 1.09000 * 109.47749 * 59.99592 * 11 10 8 41 41 H 1.08996 * 109.47397 * 59.99753 * 13 12 11 42 42 H 1.09005 * 109.46678 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.46836 * 299.99104 * 13 12 11 44 44 H 1.08998 * 109.47572 * 60.00654 * 14 12 11 45 45 H 1.09011 * 109.46839 * 180.02562 * 14 12 11 46 46 H 1.08996 * 109.47507 * 300.00033 * 14 12 11 47 47 H 1.09000 * 109.47030 * 300.00708 * 15 12 11 48 48 H 1.09003 * 109.46566 * 60.00045 * 15 12 11 49 49 H 0.97000 * 120.00078 * 180.02562 * 19 18 16 50 50 H 1.08995 * 109.59087 * 293.82819 * 24 7 6 51 51 H 1.08996 * 109.70232 * 173.46788 * 24 7 6 52 52 H 1.08998 * 109.49843 * 301.33932 * 25 3 2 53 53 H 1.09004 * 109.49706 * 61.43946 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5303 2.1633 1.2497 5 6 1.5281 2.1643 -1.2487 6 6 2.0119 3.6177 -1.2278 7 7 3.4739 3.6275 -1.0818 8 6 4.2467 4.3027 -1.9554 9 8 5.4463 4.3801 -1.7723 10 7 3.6899 4.8924 -3.0318 11 6 4.5407 5.5307 -4.0392 12 6 3.6652 6.1183 -5.1480 13 6 2.8516 4.9998 -5.8021 14 6 2.7148 7.1577 -4.5503 15 6 4.5536 6.7855 -6.1998 16 6 3.6912 7.3648 -7.2915 17 1 2.6169 7.2672 -7.2400 18 6 4.2738 8.0193 -8.3560 19 7 3.5212 8.5253 -9.3085 20 14 6.1321 8.1875 -8.4454 21 1 6.7001 7.0230 -9.1711 22 1 6.4818 9.4383 -9.1655 23 1 6.6915 8.2349 -7.0706 24 6 4.0772 2.8876 0.0351 25 6 3.5703 1.4423 0.0006 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8942 1.6492 2.1394 32 1 1.8939 3.1909 1.2502 33 1 0.4403 2.1631 1.2502 34 1 1.9111 1.6662 -2.1394 35 1 0.4385 2.1436 -1.2599 36 1 1.5571 4.1421 -0.3875 37 1 1.7346 4.1085 -2.1607 38 1 2.7259 4.8941 -3.1396 39 1 5.1206 6.3274 -3.5732 40 1 5.2176 4.7902 -4.4653 41 1 2.2186 4.5248 -5.0525 42 1 2.2282 5.4184 -6.5922 43 1 3.5287 4.2593 -6.2279 44 1 3.2943 7.9546 -4.0843 45 1 2.0907 7.5760 -5.3401 46 1 2.0818 6.6828 -3.8007 47 1 5.1330 7.5824 -5.7335 48 1 5.2310 6.0452 -6.6256 49 1 3.9311 8.9854 -10.0576 50 1 3.7909 3.3524 0.9784 51 1 5.1628 2.8965 -0.0621 52 1 3.9337 0.9080 0.8784 53 1 3.9344 0.9509 -0.9016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358702423.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:18 Heat of formation + Delta-G solvation = -53.749960 kcal Electronic energy + Delta-G solvation = -27384.658989 eV Core-core repulsion = 23869.418863 eV Total energy + Delta-G solvation = -3515.240126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74668 -38.97076 -37.22766 -35.02686 -33.70768 -32.19938 -31.30752 -30.72506 -28.04921 -27.71328 -26.54531 -26.39293 -25.13657 -23.69406 -22.69865 -21.82854 -20.04429 -19.17626 -18.08403 -17.46176 -16.80409 -16.17313 -15.69737 -15.41043 -15.14785 -14.60840 -14.54814 -14.33989 -14.10793 -13.86421 -13.76461 -13.39068 -13.26317 -12.77959 -12.60690 -12.44040 -12.33827 -12.26093 -12.22720 -12.10625 -11.89060 -11.46026 -11.25631 -11.21925 -11.10505 -10.99575 -10.80695 -10.62957 -10.59660 -10.48142 -10.42802 -9.99060 -9.94565 -9.73091 -9.49103 -8.97887 -8.90869 -8.52272 -8.41865 -6.03183 -4.00299 2.72553 3.32962 3.35039 3.40896 3.45623 3.99584 4.28488 4.37973 4.42931 4.47098 4.79945 4.84932 4.96033 5.01952 5.05692 5.19755 5.22024 5.26533 5.29743 5.38398 5.42003 5.45815 5.55709 5.57381 5.63397 5.65218 5.66117 5.70368 5.75719 5.81180 5.82103 5.90453 6.03112 6.13508 6.14718 6.18215 6.20780 6.35210 6.46901 6.54135 6.60915 6.76269 6.92969 7.02589 7.02869 7.06872 7.22529 7.38987 7.79371 8.09924 8.53922 8.75644 9.00850 9.59716 11.09549 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025964 B = 0.002796 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.155869 B =10010.262023 C =10540.369105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.060 4.060 4 C -0.149 4.149 5 C -0.126 4.126 6 C 0.110 3.890 7 N -0.631 5.631 8 C 0.704 3.296 9 O -0.595 6.595 10 N -0.738 5.738 11 C 0.144 3.856 12 C -0.063 4.063 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.002 4.002 16 C -0.510 4.510 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.130 3.870 25 C -0.124 4.124 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.019 0.981 48 H 0.014 0.986 49 H 0.262 0.738 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.073 0.927 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 -15.751 21.346 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.060 4.060 4 C -0.206 4.206 5 C -0.165 4.165 6 C -0.013 4.013 7 N -0.370 5.370 8 C 0.406 3.594 9 O -0.473 6.473 10 N -0.395 5.395 11 C 0.020 3.980 12 C -0.063 4.063 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.040 4.040 16 C -0.548 4.548 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.544 5.544 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.189 1.189 24 C 0.007 3.993 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.110 0.890 52 H 0.091 0.909 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.924 -15.580 21.277 27.029 hybrid contribution 0.473 0.112 -0.306 0.574 sum -5.451 -15.468 20.972 26.623 Atomic orbital electron populations 1.21896 0.95890 1.01478 1.02115 1.21559 0.95966 0.95584 1.01907 1.20519 0.94949 0.95209 0.95289 1.22042 1.01145 1.00602 0.96766 1.22050 1.01020 0.95226 0.98154 1.21652 0.80551 0.97218 1.01895 1.47226 1.05894 1.53998 1.29846 1.15909 0.85008 0.78691 0.79820 1.90893 1.13276 1.66380 1.76795 1.45500 1.10514 1.60399 1.23084 1.21492 0.92615 0.96324 0.87566 1.20694 0.96042 0.95425 0.94156 1.21761 0.99502 0.97318 0.99858 1.21759 0.98843 0.98087 0.99748 1.19590 0.95199 0.95352 0.93844 1.21078 0.94937 1.34742 1.04019 0.90408 1.24998 0.97744 0.95151 0.95558 1.69906 1.35258 1.38121 1.11093 0.86859 0.86723 0.77551 0.78658 1.20383 1.21527 1.18936 1.21414 0.99506 0.90382 0.88023 1.22006 0.94842 0.96834 1.02593 0.93040 0.92421 0.92342 0.92034 0.92040 0.92691 0.92147 0.92278 0.91303 0.90390 0.91213 0.90525 0.76820 0.92002 0.92188 0.95221 0.90915 0.93419 0.93364 0.90911 0.95233 0.96311 0.96787 0.92818 0.91863 0.89048 0.90858 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.21 37.16 0.34 -0.54 16 2 C -0.11 -0.70 4.99 -26.73 -0.13 -0.83 16 3 C -0.06 -0.40 0.54 -154.47 -0.08 -0.49 16 4 C -0.15 -0.91 7.36 37.16 0.27 -0.63 16 5 C -0.13 -0.94 4.59 -26.61 -0.12 -1.06 16 6 C 0.11 0.97 5.96 -3.71 -0.02 0.95 16 7 N -0.63 -7.41 2.97 -178.50 -0.53 -7.94 16 8 C 0.70 11.08 8.30 -86.92 -0.72 10.36 16 9 O -0.59 -11.71 15.79 5.28 0.08 -11.63 16 10 N -0.74 -10.97 4.87 -65.22 -0.32 -11.29 16 11 C 0.14 2.51 4.57 -4.04 -0.02 2.49 16 12 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 13 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C 0.00 -0.05 3.11 -27.89 -0.09 -0.13 16 16 C -0.51 -13.66 8.20 -34.44 -0.28 -13.95 16 17 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 20 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C 0.13 1.32 5.95 -3.71 -0.02 1.30 16 25 C -0.12 -1.00 4.91 -26.61 -0.13 -1.13 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 28 H 0.06 0.33 6.40 -51.93 -0.33 0.00 16 29 H 0.06 0.36 8.14 -51.94 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.41 4.98 -51.93 -0.26 0.15 16 33 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.49 6.36 -51.93 -0.33 0.15 16 36 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 37 H 0.08 0.67 5.57 -51.93 -0.29 0.38 16 38 H 0.39 5.03 3.62 -40.82 -0.15 4.88 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.42 6.62 -51.92 -0.34 1.07 16 46 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 47 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 48 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.06 0.57 6.69 -51.93 -0.35 0.22 16 51 H 0.09 1.12 7.04 -51.93 -0.37 0.75 16 52 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 53 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -31.52 381.32 -8.88 -40.40 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -9.38 Total: 1.22 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.59 Total: -6.96 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.07 Total: -45.74 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.52 -8.88 -40.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358702423.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.349 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds