Wall clock time and date at job start Fri Apr 10 2020 22:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46767 * 2 1 4 4 C 1.53000 * 109.45862 * 60.02801 * 3 2 1 5 5 C 1.53042 * 109.46369 * 300.07475 * 3 2 1 6 6 C 1.53195 * 109.31359 * 178.61581 * 5 3 2 7 7 N 1.46928 * 108.77467 * 54.63132 * 6 5 3 8 8 C 1.34773 * 120.62702 * 126.41611 * 7 6 5 9 9 O 1.21593 * 119.99741 * 174.93772 * 8 7 6 10 10 N 1.34777 * 120.00281 * 354.94227 * 8 7 6 11 11 C 1.46496 * 119.99703 * 185.07544 * 10 8 7 12 12 C 1.53005 * 109.47128 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46983 * 300.00299 * 12 11 10 14 14 C 1.53001 * 109.46523 * 59.99778 * 12 11 10 15 15 C 1.52996 * 109.47503 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47214 * 180.02562 * 15 12 11 17 17 H 1.07994 * 120.00233 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99544 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99679 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00668 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46814 * 89.99904 * 20 18 16 22 22 H 1.48501 * 109.47114 * 210.00319 * 20 18 16 23 23 H 1.48500 * 109.46726 * 330.00151 * 20 18 16 24 24 C 1.46928 * 118.73864 * 306.38625 * 7 6 5 25 25 C 1.53035 * 109.46033 * 179.97438 * 3 2 1 26 26 H 1.09006 * 109.46341 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47499 * 299.99297 * 1 2 3 28 28 H 1.09000 * 109.47571 * 60.00012 * 1 2 3 29 29 H 1.08988 * 109.47228 * 120.00280 * 2 1 3 30 30 H 1.08998 * 109.46852 * 240.00972 * 2 1 3 31 31 H 1.09003 * 109.46881 * 60.00073 * 4 3 2 32 32 H 1.09006 * 109.47478 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47480 * 300.00117 * 4 3 2 34 34 H 1.09004 * 109.49351 * 298.56231 * 5 3 2 35 35 H 1.08993 * 109.49777 * 58.65692 * 5 3 2 36 36 H 1.08996 * 109.58286 * 294.83924 * 6 5 3 37 37 H 1.08996 * 109.58536 * 174.41726 * 6 5 3 38 38 H 0.96997 * 120.00176 * 5.06692 * 10 8 7 39 39 H 1.09003 * 109.47471 * 299.99265 * 11 10 8 40 40 H 1.09000 * 109.47749 * 59.99592 * 11 10 8 41 41 H 1.08996 * 109.47397 * 59.99753 * 13 12 11 42 42 H 1.09005 * 109.46678 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.46836 * 299.99104 * 13 12 11 44 44 H 1.08998 * 109.47572 * 60.00654 * 14 12 11 45 45 H 1.09011 * 109.46839 * 180.02562 * 14 12 11 46 46 H 1.08996 * 109.47507 * 300.00033 * 14 12 11 47 47 H 1.09000 * 109.47030 * 300.00708 * 15 12 11 48 48 H 1.09003 * 109.46566 * 60.00045 * 15 12 11 49 49 H 0.97000 * 120.00078 * 180.02562 * 19 18 16 50 50 H 1.08995 * 109.59087 * 293.82819 * 24 7 6 51 51 H 1.08996 * 109.70232 * 173.46788 * 24 7 6 52 52 H 1.08998 * 109.49843 * 301.33932 * 25 3 2 53 53 H 1.09004 * 109.49706 * 61.43946 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5303 2.1633 1.2497 5 6 1.5281 2.1643 -1.2487 6 6 2.0119 3.6177 -1.2278 7 7 3.4739 3.6275 -1.0818 8 6 4.2467 4.3027 -1.9554 9 8 5.4463 4.3801 -1.7723 10 7 3.6899 4.8924 -3.0318 11 6 4.5407 5.5307 -4.0392 12 6 3.6652 6.1183 -5.1480 13 6 2.8516 4.9998 -5.8021 14 6 2.7148 7.1577 -4.5503 15 6 4.5536 6.7855 -6.1998 16 6 3.6912 7.3648 -7.2915 17 1 2.6169 7.2672 -7.2400 18 6 4.2738 8.0193 -8.3560 19 7 3.5212 8.5253 -9.3085 20 14 6.1321 8.1875 -8.4454 21 1 6.7001 7.0230 -9.1711 22 1 6.4818 9.4383 -9.1655 23 1 6.6915 8.2349 -7.0706 24 6 4.0772 2.8876 0.0351 25 6 3.5703 1.4423 0.0006 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8942 1.6492 2.1394 32 1 1.8939 3.1909 1.2502 33 1 0.4403 2.1631 1.2502 34 1 1.9111 1.6662 -2.1394 35 1 0.4385 2.1436 -1.2599 36 1 1.5571 4.1421 -0.3875 37 1 1.7346 4.1085 -2.1607 38 1 2.7259 4.8941 -3.1396 39 1 5.1206 6.3274 -3.5732 40 1 5.2176 4.7902 -4.4653 41 1 2.2186 4.5248 -5.0525 42 1 2.2282 5.4184 -6.5922 43 1 3.5287 4.2593 -6.2279 44 1 3.2943 7.9546 -4.0843 45 1 2.0907 7.5760 -5.3401 46 1 2.0818 6.6828 -3.8007 47 1 5.1330 7.5824 -5.7335 48 1 5.2310 6.0452 -6.6256 49 1 3.9311 8.9854 -10.0576 50 1 3.7909 3.3524 0.9784 51 1 5.1628 2.8965 -0.0621 52 1 3.9337 0.9080 0.8784 53 1 3.9344 0.9509 -0.9016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358702423.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:17 Heat of formation + Delta-G solvation = -71.571184 kcal Electronic energy + Delta-G solvation = -27385.431775 eV Core-core repulsion = 23869.418863 eV Total energy + Delta-G solvation = -3516.012913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71421 -39.94761 -38.66231 -35.93390 -35.23162 -34.02071 -32.15609 -31.37378 -29.71979 -28.53823 -27.99640 -27.58337 -26.01553 -24.42134 -24.30896 -22.78546 -21.07348 -20.33141 -19.23992 -18.89317 -18.42476 -17.32071 -16.73712 -16.29296 -16.05862 -15.78316 -15.61335 -15.47446 -15.26976 -15.15928 -14.80743 -14.73207 -14.22992 -14.18811 -14.12215 -13.75381 -13.32408 -12.97924 -12.93119 -12.89492 -12.83320 -12.70372 -12.61564 -12.43606 -12.30852 -12.15552 -12.12715 -11.79605 -11.76324 -11.52109 -11.36657 -11.34254 -11.20043 -11.10206 -11.00936 -10.89510 -10.70058 -10.17204 -9.40405 -8.22167 -6.21997 1.35846 1.38819 1.48986 1.66492 2.14342 2.39371 2.96005 3.13343 3.70041 3.79929 3.81603 3.92179 4.06125 4.14631 4.14696 4.23676 4.32563 4.43111 4.51251 4.60428 4.65806 4.66278 4.70651 4.73303 4.75248 4.79948 4.90504 4.92214 4.94251 5.00951 5.05960 5.08566 5.08908 5.20014 5.24708 5.27430 5.29085 5.32260 5.34110 5.36727 5.40309 5.49754 5.51313 5.56936 5.64777 5.68396 5.69087 5.76579 5.96672 6.38440 6.84507 6.97995 7.40754 7.56435 8.93339 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025964 B = 0.002796 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.155869 B =10010.262023 C =10540.369105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.056 4.056 4 C -0.146 4.146 5 C -0.123 4.123 6 C 0.105 3.895 7 N -0.624 5.624 8 C 0.699 3.301 9 O -0.640 6.640 10 N -0.728 5.728 11 C 0.158 3.842 12 C -0.057 4.057 13 C -0.121 4.121 14 C -0.122 4.122 15 C -0.003 4.003 16 C -0.500 4.500 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.951 5.951 20 Si 0.932 3.068 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 C 0.127 3.873 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.406 0.594 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.047 0.953 46 H 0.065 0.935 47 H 0.014 0.986 48 H 0.013 0.987 49 H 0.262 0.738 50 H 0.080 0.920 51 H 0.066 0.934 52 H 0.089 0.911 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -17.081 23.635 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.056 4.056 4 C -0.202 4.202 5 C -0.161 4.161 6 C -0.018 4.018 7 N -0.361 5.361 8 C 0.400 3.600 9 O -0.522 6.522 10 N -0.386 5.386 11 C 0.033 3.967 12 C -0.057 4.057 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.041 4.041 16 C -0.538 4.538 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 C 0.004 3.996 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.084 0.916 52 H 0.107 0.893 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.813 -16.940 23.601 29.840 hybrid contribution 0.650 0.475 -0.952 1.247 sum -6.163 -16.465 22.649 28.671 Atomic orbital electron populations 1.21887 0.95214 1.01741 1.02399 1.21523 0.96488 0.94958 1.01779 1.20496 0.93787 0.95780 0.95539 1.22015 1.01746 1.00118 0.96367 1.22040 1.02061 0.94074 0.97904 1.21921 0.78456 0.98519 1.02875 1.47305 1.07061 1.52700 1.29025 1.16086 0.84704 0.78908 0.80280 1.90863 1.15438 1.68027 1.77880 1.45225 1.10763 1.60176 1.22476 1.21120 0.92333 0.95750 0.87507 1.20552 0.95774 0.95898 0.93512 1.21679 0.99351 0.96771 1.00049 1.21682 0.98614 0.97860 0.99738 1.19565 0.95299 0.95312 0.93966 1.21351 0.94451 1.33456 1.04572 0.92788 1.25807 1.02158 0.95438 0.95559 1.70038 1.37170 1.39916 1.12111 0.85922 0.81566 0.77577 0.79173 1.19727 1.21432 1.17683 1.21538 0.98158 0.91777 0.88097 1.21957 0.95937 0.95142 1.02561 0.92895 0.91756 0.92362 0.91531 0.92883 0.92104 0.92645 0.91315 0.92603 0.88533 0.89363 0.90203 0.75400 0.93189 0.93165 0.91624 0.93367 0.93742 0.93762 0.93343 0.91615 0.96751 0.96884 0.92859 0.90152 0.91586 0.89297 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.21 71.98 0.66 -0.64 16 2 C -0.11 -1.09 4.99 30.60 0.15 -0.94 16 3 C -0.06 -0.61 0.54 -52.16 -0.03 -0.64 16 4 C -0.15 -1.29 7.36 71.98 0.53 -0.76 16 5 C -0.12 -1.48 4.59 30.67 0.14 -1.34 16 6 C 0.10 1.52 5.96 86.36 0.52 2.04 16 7 N -0.62 -13.57 2.97 -836.91 -2.49 -16.05 16 8 C 0.70 21.23 8.30 179.06 1.49 22.72 16 9 O -0.64 -25.22 15.79 -4.01 -0.06 -25.28 16 10 N -0.73 -20.35 4.87 -478.53 -2.33 -22.68 16 11 C 0.16 5.34 4.57 86.38 0.39 5.73 16 12 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 13 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 14 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 15 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 16 C -0.50 -27.22 8.20 25.60 0.21 -27.01 16 17 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 18 C 0.01 0.38 5.47 84.65 0.46 0.84 16 19 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 20 Si 0.93 44.79 27.47 68.60 1.88 46.67 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 24 C 0.13 2.42 5.95 86.36 0.51 2.93 16 25 C -0.12 -1.68 4.91 30.67 0.15 -1.53 16 26 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.06 0.47 6.43 -2.39 -0.02 0.45 16 28 H 0.06 0.49 6.40 -2.39 -0.02 0.48 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.56 4.98 -2.38 -0.01 0.55 16 33 H 0.07 0.50 6.43 -2.39 -0.02 0.49 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.10 0.85 6.36 -2.39 -0.02 0.84 16 36 H 0.09 1.03 6.69 -2.39 -0.02 1.01 16 37 H 0.08 1.11 5.57 -2.39 -0.01 1.10 16 38 H 0.41 9.19 3.62 -92.71 -0.34 8.85 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 42 H 0.05 1.86 6.62 -2.38 -0.02 1.84 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.87 6.62 -2.38 -0.02 1.86 16 46 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 47 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 48 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 49 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 50 H 0.08 1.27 6.69 -2.39 -0.02 1.25 16 51 H 0.07 1.62 7.04 -2.39 -0.02 1.60 16 52 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -69.68 381.32 4.21 -65.47 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.49 Total: 18.03 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 6.41 Total: -7.76 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.52 Total: -97.13 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.06 Total: -25.28 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -69.68 4.21 -65.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358702423.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.103 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds