Wall clock time and date at job start Fri Apr 10 2020 22:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47524 * 2 1 4 4 C 1.53007 * 109.49510 * 60.05811 * 3 2 1 5 5 C 1.53034 * 109.50224 * 180.15992 * 3 2 1 6 6 C 1.53033 * 109.53942 * 181.31872 * 5 3 2 7 7 C 1.53202 * 109.30939 * 298.63263 * 6 5 3 8 8 N 1.46920 * 108.77683 * 54.63620 * 7 6 5 9 9 C 1.34776 * 120.63245 * 126.41125 * 8 7 6 10 10 O 1.21585 * 120.00112 * 174.94167 * 9 8 7 11 11 N 1.34782 * 119.99536 * 354.93653 * 9 8 7 12 12 C 1.46503 * 119.99431 * 185.07070 * 11 9 8 13 13 C 1.52997 * 109.46694 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47188 * 299.99684 * 13 12 11 15 15 C 1.52998 * 109.47500 * 59.99954 * 13 12 11 16 16 C 1.53007 * 109.47096 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.46985 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00291 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99721 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00017 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.46996 * 90.00079 * 21 19 17 23 23 H 1.48505 * 109.47183 * 209.99953 * 21 19 17 24 24 H 1.48503 * 109.47196 * 330.00157 * 21 19 17 25 25 C 1.46926 * 118.74085 * 306.39496 * 8 7 6 26 26 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47438 * 300.00376 * 1 2 3 28 28 H 1.09002 * 109.46851 * 60.00188 * 1 2 3 29 29 H 1.08993 * 109.47444 * 239.99618 * 2 1 3 30 30 H 1.09002 * 109.46851 * 119.99811 * 2 1 3 31 31 H 1.09006 * 109.46931 * 60.00879 * 4 3 2 32 32 H 1.09000 * 109.46689 * 180.02562 * 4 3 2 33 33 H 1.08989 * 109.47354 * 300.00516 * 4 3 2 34 34 H 1.09005 * 109.45698 * 301.33592 * 5 3 2 35 35 H 1.09004 * 109.46147 * 61.29176 * 5 3 2 36 36 H 1.09002 * 109.49933 * 178.68521 * 6 5 3 37 37 H 1.08996 * 109.50217 * 58.58299 * 6 5 3 38 38 H 1.09000 * 109.58409 * 294.84696 * 7 6 5 39 39 H 1.09000 * 109.70056 * 174.49316 * 7 6 5 40 40 H 0.96992 * 119.99948 * 5.08016 * 11 9 8 41 41 H 1.09003 * 109.47450 * 300.00096 * 12 11 9 42 42 H 1.08994 * 109.47009 * 60.00419 * 12 11 9 43 43 H 1.09003 * 109.46550 * 60.00237 * 14 13 12 44 44 H 1.08997 * 109.47316 * 179.97438 * 14 13 12 45 45 H 1.09002 * 109.47318 * 300.00408 * 14 13 12 46 46 H 1.09003 * 109.47215 * 60.00242 * 15 13 12 47 47 H 1.09000 * 109.46971 * 180.02562 * 15 13 12 48 48 H 1.08998 * 109.47115 * 299.99623 * 15 13 12 49 49 H 1.08995 * 109.46964 * 299.99703 * 16 13 12 50 50 H 1.09002 * 109.46921 * 59.99891 * 16 13 12 51 51 H 0.96996 * 119.99885 * 180.02562 * 20 19 17 52 52 H 1.09006 * 109.58235 * 293.81904 * 25 8 7 53 53 H 1.08998 * 109.70776 * 173.46132 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5316 2.1639 1.2498 5 6 3.5704 1.4432 -0.0040 6 6 4.0817 2.8852 0.0292 7 6 3.5945 3.6243 -1.2212 8 7 2.1325 3.5042 -1.3021 9 6 1.3588 4.6013 -1.4215 10 8 0.1590 4.4848 -1.5799 11 7 1.9153 5.8276 -1.3653 12 6 1.0640 7.0197 -1.3834 13 6 1.9392 8.2725 -1.3105 14 6 2.7566 8.2491 -0.0174 15 6 2.8861 8.3037 -2.5119 16 6 1.0502 9.5176 -1.3300 17 6 1.9123 10.7515 -1.2577 18 1 2.9868 10.6572 -1.2036 19 6 1.3293 12.0010 -1.2615 20 7 2.0817 13.0779 -1.1989 21 14 -0.5292 12.1642 -1.3557 22 1 -1.0951 12.1775 0.0171 23 1 -0.8805 13.4301 -2.0482 24 1 -1.0894 11.0148 -2.1110 25 6 1.5297 2.1652 -1.2506 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8959 1.6500 2.1395 32 1 1.8949 3.1916 1.2491 33 1 0.4417 2.1642 1.2511 34 1 3.9361 0.9081 0.8724 35 1 3.9315 0.9505 -0.9069 36 1 5.1715 2.8845 0.0498 37 1 3.7007 3.3860 0.9192 38 1 4.0473 3.1803 -2.1078 39 1 3.8717 4.6766 -1.1575 40 1 2.8793 5.9207 -1.3130 41 1 0.4819 7.0366 -2.3048 42 1 0.3892 6.9973 -0.5277 43 1 3.3900 7.3620 -0.0040 44 1 3.3805 9.1413 0.0343 45 1 2.0821 8.2268 0.8386 46 1 2.3038 8.3205 -3.4332 47 1 3.5099 9.1960 -2.4597 48 1 3.5195 7.4168 -2.4984 49 1 0.4683 9.5341 -2.2515 50 1 0.3753 9.4956 -0.4744 51 1 1.6715 13.9568 -1.2012 52 1 1.8141 1.6021 -2.1396 53 1 0.4442 2.2523 -1.2049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358718984.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:21 Heat of formation + Delta-G solvation = -54.497245 kcal Electronic energy + Delta-G solvation = -27615.751501 eV Core-core repulsion = 24100.478970 eV Total energy + Delta-G solvation = -3515.272531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75926 -38.80343 -37.13386 -35.17738 -33.49960 -32.48487 -32.00484 -29.89291 -27.90223 -27.42382 -26.54680 -26.50550 -24.97552 -24.42844 -22.36668 -21.70286 -19.96271 -18.90086 -18.48746 -17.53827 -16.80586 -16.20014 -15.71070 -15.34625 -15.04297 -14.66591 -14.23302 -14.10867 -14.01150 -13.90916 -13.56206 -13.45174 -13.31278 -13.10453 -12.70949 -12.55669 -12.34068 -12.26710 -12.23579 -11.85439 -11.57372 -11.43354 -11.24967 -11.20742 -11.10400 -10.99772 -10.82029 -10.60649 -10.58564 -10.47544 -10.43830 -9.98577 -9.94598 -9.73159 -9.49036 -8.98008 -8.90523 -8.52416 -8.41853 -6.03294 -4.00401 2.72479 3.32850 3.35380 3.40812 3.45498 3.98143 4.34216 4.43846 4.46986 4.50087 4.69980 4.84292 4.99340 5.04212 5.05683 5.23941 5.29639 5.31008 5.40089 5.43560 5.49528 5.52728 5.56966 5.61637 5.64017 5.65746 5.67714 5.72039 5.77804 5.88107 5.91671 5.94810 6.08164 6.13383 6.14275 6.19197 6.26494 6.35028 6.47865 6.54015 6.60828 6.76195 6.92957 7.02484 7.03027 7.06800 7.22390 7.38867 7.79280 8.10233 8.53815 8.76047 9.00755 9.59612 11.09451 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.002927 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.556632 B = 9563.941836 C =10056.602509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.077 4.077 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.138 4.138 7 C 0.111 3.889 8 N -0.630 5.630 9 C 0.705 3.295 10 O -0.594 6.594 11 N -0.738 5.738 12 C 0.144 3.856 13 C -0.063 4.063 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.002 4.002 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C 0.140 3.860 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.029 0.971 49 H 0.019 0.981 50 H 0.014 0.986 51 H 0.262 0.738 52 H 0.059 0.941 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -26.342 2.496 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.078 4.078 4 C -0.197 4.197 5 C -0.144 4.144 6 C -0.176 4.176 7 C -0.012 4.012 8 N -0.368 5.368 9 C 0.406 3.594 10 O -0.472 6.472 11 N -0.395 5.395 12 C 0.020 3.980 13 C -0.063 4.063 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.017 3.983 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.037 0.963 50 H 0.032 0.968 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.337 -26.184 2.383 26.503 hybrid contribution -0.429 0.328 0.013 0.540 sum 2.908 -25.856 2.396 26.130 Atomic orbital electron populations 1.21905 0.95673 1.01497 1.02565 1.21508 0.96188 0.95028 1.01967 1.20964 0.95392 0.95302 0.96140 1.21899 1.01305 1.00481 0.96046 1.21553 0.94427 0.96400 1.02050 1.21981 1.00701 0.96335 0.98626 1.21605 0.80574 1.00835 0.98226 1.47200 1.05841 1.05566 1.78217 1.15891 0.85012 0.80549 0.77913 1.90890 1.13216 1.85635 1.57477 1.45506 1.10489 1.04521 1.79026 1.21488 0.92601 0.82340 1.01549 1.20694 0.96045 0.93921 0.95660 1.21760 0.99469 1.00593 0.96593 1.21757 0.98859 1.00605 0.97214 1.19589 0.95191 0.92595 0.96588 1.21079 0.94925 0.88632 1.50150 0.90412 1.24998 0.97744 0.95966 0.94741 1.69903 1.35261 0.97863 1.51342 0.86859 0.86726 0.77618 0.78583 1.20383 1.21532 1.18940 1.21526 0.99739 0.80998 0.96073 0.92913 0.92250 0.92240 0.91938 0.91788 0.92954 0.92246 0.92321 0.91725 0.91835 0.90770 0.90892 0.91483 0.90463 0.76834 0.92018 0.92186 0.95238 0.90924 0.93419 0.93370 0.90917 0.95231 0.96319 0.96798 0.92816 0.92232 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.21 37.16 0.34 -0.84 16 2 C -0.11 -0.75 4.99 -26.73 -0.13 -0.88 16 3 C -0.08 -0.62 0.54 -154.38 -0.08 -0.71 16 4 C -0.14 -1.31 7.64 37.16 0.28 -1.03 16 5 C -0.11 -0.74 4.71 -26.70 -0.13 -0.86 16 6 C -0.14 -1.01 5.74 -26.61 -0.15 -1.16 16 7 C 0.11 0.97 6.43 -3.71 -0.02 0.95 16 8 N -0.63 -7.37 2.41 -178.49 -0.43 -7.80 16 9 C 0.70 10.98 8.30 -86.91 -0.72 10.25 16 10 O -0.59 -11.55 15.79 5.29 0.08 -11.47 16 11 N -0.74 -10.89 4.87 -65.23 -0.32 -11.20 16 12 C 0.14 2.50 4.57 -4.04 -0.02 2.48 16 13 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 14 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 17 C -0.51 -13.65 8.21 -34.44 -0.28 -13.94 16 18 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 21 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 C 0.14 1.46 4.57 -3.71 -0.02 1.44 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 28 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 33 H 0.06 0.60 6.43 -51.94 -0.33 0.27 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.66 5.56 -51.93 -0.29 0.37 16 40 H 0.39 4.99 3.62 -40.82 -0.15 4.84 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 44 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 48 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 49 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 50 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 51 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 52 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 53 H 0.10 1.19 5.65 -51.93 -0.29 0.90 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -31.30 383.75 -8.90 -40.20 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -9.52 Total: 1.75 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.60 Total: -7.70 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.03 Total: -45.51 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.30 -8.90 -40.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358718984.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.297 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds