Wall clock time and date at job start Fri Apr 10 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47524 * 2 1 4 4 C 1.53007 * 109.49510 * 60.05811 * 3 2 1 5 5 C 1.53034 * 109.50224 * 180.15992 * 3 2 1 6 6 C 1.53033 * 109.53942 * 181.31872 * 5 3 2 7 7 C 1.53202 * 109.30939 * 298.63263 * 6 5 3 8 8 N 1.46920 * 108.77683 * 54.63620 * 7 6 5 9 9 C 1.34776 * 120.63245 * 126.41125 * 8 7 6 10 10 O 1.21585 * 120.00112 * 174.94167 * 9 8 7 11 11 N 1.34782 * 119.99536 * 354.93653 * 9 8 7 12 12 C 1.46503 * 119.99431 * 185.07070 * 11 9 8 13 13 C 1.52997 * 109.46694 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47188 * 299.99684 * 13 12 11 15 15 C 1.52998 * 109.47500 * 59.99954 * 13 12 11 16 16 C 1.53007 * 109.47096 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.46985 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00291 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99721 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00017 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.46996 * 90.00079 * 21 19 17 23 23 H 1.48505 * 109.47183 * 209.99953 * 21 19 17 24 24 H 1.48503 * 109.47196 * 330.00157 * 21 19 17 25 25 C 1.46926 * 118.74085 * 306.39496 * 8 7 6 26 26 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47438 * 300.00376 * 1 2 3 28 28 H 1.09002 * 109.46851 * 60.00188 * 1 2 3 29 29 H 1.08993 * 109.47444 * 239.99618 * 2 1 3 30 30 H 1.09002 * 109.46851 * 119.99811 * 2 1 3 31 31 H 1.09006 * 109.46931 * 60.00879 * 4 3 2 32 32 H 1.09000 * 109.46689 * 180.02562 * 4 3 2 33 33 H 1.08989 * 109.47354 * 300.00516 * 4 3 2 34 34 H 1.09005 * 109.45698 * 301.33592 * 5 3 2 35 35 H 1.09004 * 109.46147 * 61.29176 * 5 3 2 36 36 H 1.09002 * 109.49933 * 178.68521 * 6 5 3 37 37 H 1.08996 * 109.50217 * 58.58299 * 6 5 3 38 38 H 1.09000 * 109.58409 * 294.84696 * 7 6 5 39 39 H 1.09000 * 109.70056 * 174.49316 * 7 6 5 40 40 H 0.96992 * 119.99948 * 5.08016 * 11 9 8 41 41 H 1.09003 * 109.47450 * 300.00096 * 12 11 9 42 42 H 1.08994 * 109.47009 * 60.00419 * 12 11 9 43 43 H 1.09003 * 109.46550 * 60.00237 * 14 13 12 44 44 H 1.08997 * 109.47316 * 179.97438 * 14 13 12 45 45 H 1.09002 * 109.47318 * 300.00408 * 14 13 12 46 46 H 1.09003 * 109.47215 * 60.00242 * 15 13 12 47 47 H 1.09000 * 109.46971 * 180.02562 * 15 13 12 48 48 H 1.08998 * 109.47115 * 299.99623 * 15 13 12 49 49 H 1.08995 * 109.46964 * 299.99703 * 16 13 12 50 50 H 1.09002 * 109.46921 * 59.99891 * 16 13 12 51 51 H 0.96996 * 119.99885 * 180.02562 * 20 19 17 52 52 H 1.09006 * 109.58235 * 293.81904 * 25 8 7 53 53 H 1.08998 * 109.70776 * 173.46132 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5316 2.1639 1.2498 5 6 3.5704 1.4432 -0.0040 6 6 4.0817 2.8852 0.0292 7 6 3.5945 3.6243 -1.2212 8 7 2.1325 3.5042 -1.3021 9 6 1.3588 4.6013 -1.4215 10 8 0.1590 4.4848 -1.5799 11 7 1.9153 5.8276 -1.3653 12 6 1.0640 7.0197 -1.3834 13 6 1.9392 8.2725 -1.3105 14 6 2.7566 8.2491 -0.0174 15 6 2.8861 8.3037 -2.5119 16 6 1.0502 9.5176 -1.3300 17 6 1.9123 10.7515 -1.2577 18 1 2.9868 10.6572 -1.2036 19 6 1.3293 12.0010 -1.2615 20 7 2.0817 13.0779 -1.1989 21 14 -0.5292 12.1642 -1.3557 22 1 -1.0951 12.1775 0.0171 23 1 -0.8805 13.4301 -2.0482 24 1 -1.0894 11.0148 -2.1110 25 6 1.5297 2.1652 -1.2506 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8959 1.6500 2.1395 32 1 1.8949 3.1916 1.2491 33 1 0.4417 2.1642 1.2511 34 1 3.9361 0.9081 0.8724 35 1 3.9315 0.9505 -0.9069 36 1 5.1715 2.8845 0.0498 37 1 3.7007 3.3860 0.9192 38 1 4.0473 3.1803 -2.1078 39 1 3.8717 4.6766 -1.1575 40 1 2.8793 5.9207 -1.3130 41 1 0.4819 7.0366 -2.3048 42 1 0.3892 6.9973 -0.5277 43 1 3.3900 7.3620 -0.0040 44 1 3.3805 9.1413 0.0343 45 1 2.0821 8.2268 0.8386 46 1 2.3038 8.3205 -3.4332 47 1 3.5099 9.1960 -2.4597 48 1 3.5195 7.4168 -2.4984 49 1 0.4683 9.5341 -2.2515 50 1 0.3753 9.4956 -0.4744 51 1 1.6715 13.9568 -1.2012 52 1 1.8141 1.6021 -2.1396 53 1 0.4442 2.2523 -1.2049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358718984.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:20 Heat of formation + Delta-G solvation = -71.781120 kcal Electronic energy + Delta-G solvation = -27616.500986 eV Core-core repulsion = 24100.478970 eV Total energy + Delta-G solvation = -3516.022016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73890 -39.84643 -38.56160 -36.06032 -35.08677 -33.88904 -33.18225 -30.57460 -29.74227 -28.35109 -27.99790 -27.58825 -26.08347 -25.08198 -24.17074 -22.40453 -21.07462 -20.13463 -19.24686 -18.95756 -18.75560 -17.32035 -16.71377 -16.30789 -16.16039 -15.77123 -15.55349 -15.43875 -15.29153 -14.88385 -14.71629 -14.42191 -14.31391 -14.19595 -14.15019 -13.86596 -13.72124 -13.21588 -12.97702 -12.93940 -12.84633 -12.61859 -12.55992 -12.31349 -12.24587 -12.17339 -12.06494 -11.83190 -11.77003 -11.52239 -11.47466 -11.37379 -11.22299 -11.10552 -11.00616 -10.89331 -10.70291 -10.16369 -9.39552 -8.22373 -6.22176 1.35601 1.38592 1.48737 1.67269 2.16075 2.39149 2.97008 3.13140 3.67384 3.80147 3.86205 3.92418 4.05793 4.09091 4.13794 4.21386 4.32744 4.39483 4.47000 4.58834 4.63762 4.70710 4.71879 4.75050 4.78630 4.83034 4.86535 4.89873 4.94021 5.01104 5.01986 5.08607 5.10097 5.14967 5.19868 5.22998 5.28674 5.29478 5.36355 5.37268 5.40099 5.45971 5.50580 5.55071 5.57837 5.68109 5.68913 5.76494 5.97883 6.38249 6.84313 6.99531 7.40570 7.58024 8.93141 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.002927 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.556632 B = 9563.941836 C =10056.602509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C -0.070 4.070 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.134 4.134 7 C 0.104 3.896 8 N -0.623 5.623 9 C 0.700 3.300 10 O -0.639 6.639 11 N -0.728 5.728 12 C 0.158 3.842 13 C -0.057 4.057 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.003 4.003 17 C -0.500 4.500 18 H 0.054 0.946 19 C 0.007 3.993 20 N -0.950 5.950 21 Si 0.932 3.068 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.253 1.253 25 C 0.136 3.864 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.406 0.594 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.014 0.986 50 H 0.013 0.987 51 H 0.263 0.737 52 H 0.074 0.926 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -29.234 2.611 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.142 4.142 3 C -0.071 4.071 4 C -0.195 4.195 5 C -0.141 4.141 6 C -0.172 4.172 7 C -0.019 4.019 8 N -0.359 5.359 9 C 0.401 3.599 10 O -0.521 6.521 11 N -0.387 5.387 12 C 0.033 3.967 13 C -0.057 4.057 14 C -0.178 4.178 15 C -0.179 4.179 16 C -0.041 4.041 17 C -0.538 4.538 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.592 5.592 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.177 1.177 25 C 0.013 3.987 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.246 0.754 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.032 0.968 50 H 0.031 0.969 51 H 0.071 0.929 52 H 0.092 0.908 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.441 -29.120 2.505 29.563 hybrid contribution -0.691 1.160 -0.017 1.350 sum 3.749 -27.961 2.488 28.320 Atomic orbital electron populations 1.21901 0.96542 1.01822 1.01447 1.21492 0.95366 0.94177 1.03144 1.20929 0.96635 0.95528 0.94056 1.21867 1.00239 0.99846 0.97499 1.21556 0.92827 0.96377 1.03333 1.21968 1.01979 0.96193 0.97107 1.21902 0.78386 1.01606 0.99965 1.47266 1.07066 1.04865 1.76724 1.16063 0.84707 0.81340 0.77775 1.90860 1.15402 1.86337 1.59492 1.45226 1.10725 1.03682 1.79061 1.21108 0.92322 0.82730 1.00511 1.20551 0.95770 0.92509 0.96898 1.21675 0.99310 1.01120 0.95698 1.21679 0.98630 1.01161 0.96411 1.19562 0.95289 0.93143 0.96109 1.21352 0.94439 0.90002 1.48045 0.92784 1.25804 1.02149 0.95892 0.95103 1.70034 1.37166 0.98413 1.53602 0.85923 0.81580 0.77828 0.78909 1.19717 1.21429 1.17718 1.21647 0.98360 0.80667 0.97989 0.91816 0.93218 0.93596 0.90709 0.90547 0.91571 0.93984 0.94005 0.90442 0.90516 0.88511 0.92144 0.89567 0.90209 0.75413 0.93265 0.93205 0.91617 0.93376 0.93756 0.93800 0.93342 0.91610 0.96788 0.96915 0.92856 0.90832 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.21 71.98 0.66 -1.56 16 2 C -0.10 -1.17 4.99 30.59 0.15 -1.01 16 3 C -0.07 -0.99 0.54 -52.10 -0.03 -1.02 16 4 C -0.14 -2.42 7.64 71.98 0.55 -1.87 16 5 C -0.10 -1.04 4.71 30.62 0.14 -0.89 16 6 C -0.13 -1.49 5.74 30.67 0.18 -1.31 16 7 C 0.10 1.47 6.43 86.37 0.56 2.03 16 8 N -0.62 -13.51 2.41 -836.89 -2.02 -15.53 16 9 C 0.70 21.20 8.30 179.05 1.49 22.68 16 10 O -0.64 -25.13 15.79 -3.98 -0.06 -25.19 16 11 N -0.73 -20.34 4.87 -478.53 -2.33 -22.67 16 12 C 0.16 5.36 4.57 86.38 0.39 5.76 16 13 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 14 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 15 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 16 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 17 C -0.50 -27.24 8.21 25.60 0.21 -27.03 16 18 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 19 C 0.01 0.39 5.47 84.65 0.46 0.85 16 20 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 21 Si 0.93 44.83 27.47 68.60 1.88 46.72 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 25 C 0.14 2.65 4.57 86.36 0.39 3.05 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.78 6.43 -2.39 -0.02 0.76 16 28 H 0.04 0.76 6.56 -2.39 -0.02 0.74 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.04 0.88 5.97 -2.39 -0.01 0.87 16 33 H 0.04 0.86 6.43 -2.39 -0.02 0.85 16 34 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.85 6.34 -2.39 -0.02 0.84 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.09 5.56 -2.39 -0.01 1.07 16 40 H 0.41 9.16 3.62 -92.71 -0.34 8.83 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.70 6.86 -2.39 -0.02 1.68 16 44 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 48 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 49 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 50 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 51 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 52 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 53 H 0.07 1.73 5.65 -2.39 -0.01 1.72 16 Total: -1.00 -69.92 383.75 4.64 -65.28 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.49 Total: 19.26 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 6.38 Total: -9.46 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -4.05 Total: -96.60 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -69.92 4.64 -65.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358718984.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.505 kcal (2) G-P(sol) polarization free energy of solvation -69.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds