Wall clock time and date at job start Fri Apr 10 2020 22:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47247 * 2 1 4 4 C 1.53008 * 109.49566 * 299.93842 * 3 2 1 5 5 C 1.53035 * 109.49696 * 179.84202 * 3 2 1 6 6 C 1.53042 * 109.53595 * 178.68526 * 5 3 2 7 7 C 1.52761 * 109.38534 * 61.23732 * 6 5 3 8 8 N 1.46923 * 109.00956 * 305.58603 * 7 6 5 9 9 C 1.34771 * 120.63538 * 233.58691 * 8 7 6 10 10 O 1.21585 * 120.00369 * 184.74388 * 9 8 7 11 11 N 1.34781 * 119.99766 * 4.74260 * 9 8 7 12 12 C 1.46498 * 119.99837 * 174.92355 * 11 9 8 13 13 C 1.53003 * 109.46851 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47012 * 60.00407 * 13 12 11 15 15 C 1.52994 * 109.47581 * 300.00090 * 13 12 11 16 16 C 1.53003 * 109.47066 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.46923 * 180.02562 * 16 13 12 18 18 H 1.07991 * 120.00279 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99402 * 179.72897 * 17 16 13 20 20 N 1.31514 * 120.00270 * 0.27274 * 19 17 16 21 21 Si 1.86803 * 119.99472 * 180.27570 * 19 17 16 22 22 H 1.48497 * 109.47232 * 59.99810 * 21 19 17 23 23 H 1.48498 * 109.46849 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47067 * 299.99596 * 21 19 17 25 25 C 1.46928 * 118.73654 * 53.30962 * 8 7 6 26 26 H 1.09005 * 109.46903 * 300.00236 * 1 2 3 27 27 H 1.09001 * 109.47556 * 59.99672 * 1 2 3 28 28 H 1.09001 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47036 * 240.00251 * 2 1 3 30 30 H 1.08998 * 109.47066 * 120.00267 * 2 1 3 31 31 H 1.09001 * 109.46714 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46717 * 300.06076 * 4 3 2 33 33 H 1.08993 * 109.47376 * 60.06463 * 4 3 2 34 34 H 1.09003 * 109.46106 * 298.69840 * 5 3 2 35 35 H 1.08999 * 109.46265 * 58.66187 * 5 3 2 36 36 H 1.09004 * 109.49726 * 181.31523 * 6 5 3 37 37 H 1.08997 * 109.49761 * 301.37490 * 6 5 3 38 38 H 1.09001 * 109.50635 * 185.70540 * 7 6 5 39 39 H 1.08996 * 109.43198 * 65.42575 * 7 6 5 40 40 H 0.97004 * 119.99916 * 354.92494 * 11 9 8 41 41 H 1.09005 * 109.46965 * 60.00433 * 12 11 9 42 42 H 1.09001 * 109.47384 * 299.99994 * 12 11 9 43 43 H 1.09003 * 109.47210 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.47057 * 300.00101 * 14 13 12 45 45 H 1.09001 * 109.47304 * 59.99859 * 14 13 12 46 46 H 1.08997 * 109.47028 * 300.00138 * 15 13 12 47 47 H 1.09007 * 109.47236 * 59.99920 * 15 13 12 48 48 H 1.08994 * 109.47465 * 179.97438 * 15 13 12 49 49 H 1.09005 * 109.46780 * 60.00512 * 16 13 12 50 50 H 1.09001 * 109.47354 * 300.00205 * 16 13 12 51 51 H 0.96997 * 119.99949 * 180.02562 * 20 19 17 52 52 H 1.08999 * 109.58627 * 66.42838 * 25 8 7 53 53 H 1.09001 * 109.59082 * 186.71161 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5316 2.1639 -1.2499 5 6 3.5704 1.4431 0.0040 6 6 4.0816 2.8853 -0.0291 7 6 3.5941 3.6247 1.2155 8 7 2.1324 3.5042 1.3020 9 6 1.3587 4.6014 1.4205 10 8 0.1587 4.4850 1.5778 11 7 1.9153 5.8276 1.3646 12 6 1.0640 7.0198 1.3815 13 6 1.9394 8.2726 1.3094 14 6 2.7582 8.2488 0.0171 15 6 2.8850 8.3040 2.5117 16 6 1.0504 9.5177 1.3264 17 6 1.9127 10.7516 1.2547 18 1 2.9871 10.6572 1.2019 19 6 1.3293 12.0009 1.2504 20 7 0.0207 12.1158 1.3143 21 14 2.3977 13.5301 1.1538 22 1 3.1919 13.5007 -0.1006 23 1 1.5345 14.7384 1.1644 24 1 3.3158 13.5670 2.3203 25 6 1.5297 2.1653 1.2506 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8956 3.1913 -1.2496 32 1 1.8950 1.6493 -2.1394 33 1 0.4417 2.1652 -1.2506 34 1 3.9314 0.9506 0.9069 35 1 3.9361 0.9080 -0.8724 36 1 5.1715 2.8845 -0.0498 37 1 3.7012 3.3857 -0.9195 38 1 3.8706 4.6768 1.1455 39 1 4.0503 3.1832 2.1016 40 1 2.8795 5.9208 1.3132 41 1 0.4810 7.0369 2.3024 42 1 0.3901 6.9972 0.5251 43 1 3.3816 9.1415 -0.0345 44 1 3.3915 7.3618 0.0045 45 1 2.0846 8.2265 -0.8395 46 1 2.3017 8.3209 3.4323 47 1 3.5184 7.4169 2.4992 48 1 3.5089 9.1962 2.4601 49 1 0.4667 9.5348 2.2468 50 1 0.3770 9.4951 0.4695 51 1 -0.3897 12.9947 1.3109 52 1 1.8140 1.6022 2.1395 53 1 0.4443 2.2545 1.2063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358718985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:23 Heat of formation + Delta-G solvation = -57.871291 kcal Electronic energy + Delta-G solvation = -27562.564086 eV Core-core repulsion = 24047.145246 eV Total energy + Delta-G solvation = -3515.418841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71615 -38.73893 -37.01660 -35.14475 -33.45752 -32.46312 -31.97081 -29.86372 -27.52362 -27.08413 -26.49792 -26.43097 -24.95127 -24.39318 -22.72342 -21.69008 -19.91573 -18.88265 -18.45959 -17.49581 -16.36231 -16.06073 -15.66690 -15.30266 -15.01094 -14.62986 -14.37642 -14.12881 -13.99023 -13.85773 -13.56654 -13.29529 -13.16374 -12.97426 -12.73040 -12.50707 -12.29226 -12.10556 -12.04422 -11.82222 -11.54243 -11.39695 -11.20709 -11.11690 -10.99196 -10.86209 -10.78858 -10.61605 -10.55071 -10.44478 -10.36630 -10.24569 -9.88873 -9.85228 -9.18103 -8.91917 -8.83536 -8.35767 -8.34135 -5.98455 -3.99799 2.78098 3.32593 3.38091 3.39173 3.42068 4.03857 4.37587 4.45992 4.46931 4.53001 4.73355 4.87388 5.02389 5.07659 5.08546 5.27308 5.33807 5.36877 5.46237 5.49742 5.53809 5.55972 5.65404 5.66862 5.67944 5.69883 5.74775 5.77228 5.80775 5.91231 5.94945 5.97712 6.11516 6.19068 6.23142 6.28049 6.32123 6.44038 6.53340 6.63202 6.64256 6.84079 7.06511 7.08988 7.09172 7.17317 7.66011 7.78810 8.00201 8.16802 8.42119 8.82955 9.04820 9.63079 11.12993 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.002761 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.585632 B =10139.522099 C =10518.747532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.077 4.077 4 C -0.140 4.140 5 C -0.106 4.106 6 C -0.139 4.139 7 C 0.112 3.888 8 N -0.631 5.631 9 C 0.704 3.296 10 O -0.593 6.593 11 N -0.738 5.738 12 C 0.146 3.854 13 C -0.072 4.072 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.140 3.860 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.026 0.974 48 H 0.066 0.934 49 H 0.019 0.981 50 H 0.018 0.982 51 H 0.260 0.740 52 H 0.059 0.941 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -23.932 -2.780 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.078 4.078 4 C -0.197 4.197 5 C -0.144 4.144 6 C -0.177 4.177 7 C -0.012 4.012 8 N -0.369 5.369 9 C 0.406 3.594 10 O -0.471 6.471 11 N -0.396 5.396 12 C 0.023 3.977 13 C -0.073 4.073 14 C -0.182 4.182 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.017 3.983 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.070 0.930 52 H 0.077 0.923 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.578 -23.832 -2.661 25.149 hybrid contribution 1.065 0.998 -0.097 1.463 sum 8.644 -22.834 -2.758 24.571 Atomic orbital electron populations 1.21907 0.95652 1.01485 1.02603 1.21507 0.96210 0.95028 1.01931 1.20963 0.95354 0.95308 0.96176 1.21898 1.01350 1.00469 0.96012 1.21551 0.94466 0.96374 1.02014 1.21911 1.00660 0.96379 0.98739 1.21502 0.80710 1.00785 0.98199 1.47206 1.05795 1.05584 1.78305 1.15903 0.85021 0.80554 0.77952 1.90893 1.13177 1.85603 1.57425 1.45553 1.10438 1.04605 1.78962 1.21482 0.92552 0.82086 1.01618 1.20909 0.96319 0.95060 0.94973 1.21746 0.99354 1.00033 0.97107 1.21743 0.98799 1.00051 0.97673 1.19081 0.94029 0.89444 0.97518 1.21144 0.93045 0.90575 1.50200 0.92339 1.25013 0.94833 0.99055 0.95578 1.69954 1.09027 1.23706 1.50692 0.86714 0.80341 0.82744 0.78510 1.20357 1.21406 1.20339 1.21524 0.99769 0.81028 0.96016 0.92219 0.92231 0.92926 0.91814 0.91957 0.92246 0.92980 0.92286 0.91854 0.91751 0.90803 0.90923 0.90509 0.91556 0.76988 0.92007 0.92168 0.91488 0.95481 0.93385 0.93334 0.95477 0.91485 0.96308 0.96333 0.92985 0.92268 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.22 37.16 0.34 -0.89 16 2 C -0.11 -0.77 4.99 -26.73 -0.13 -0.91 16 3 C -0.08 -0.65 0.54 -154.39 -0.08 -0.73 16 4 C -0.14 -1.36 7.63 37.16 0.28 -1.07 16 5 C -0.11 -0.76 4.71 -26.69 -0.13 -0.88 16 6 C -0.14 -1.04 5.72 -26.83 -0.15 -1.20 16 7 C 0.11 1.01 6.40 -3.93 -0.03 0.98 16 8 N -0.63 -7.65 2.42 -178.76 -0.43 -8.08 16 9 C 0.70 11.39 8.30 -86.92 -0.72 10.66 16 10 O -0.59 -11.96 15.78 5.29 0.08 -11.87 16 11 N -0.74 -11.36 4.87 -65.22 -0.32 -11.68 16 12 C 0.15 2.68 4.57 -4.04 -0.02 2.66 16 13 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 14 C -0.13 -2.20 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.22 8.05 37.15 0.30 -1.93 16 16 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 17 C -0.51 -13.59 7.65 -34.44 -0.26 -13.86 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.14 1.51 4.57 -3.71 -0.02 1.49 16 26 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.67 5.97 -51.93 -0.31 0.36 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 38 H 0.08 0.68 5.57 -51.93 -0.29 0.39 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.39 5.17 3.62 -40.82 -0.15 5.02 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 44 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.03 0.39 6.86 -51.92 -0.36 0.04 16 48 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 52 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 53 H 0.10 1.24 5.65 -51.93 -0.29 0.95 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -31.03 387.32 -9.28 -40.30 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -9.55 Total: 1.84 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.61 Total: -6.76 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.01 Total: -45.55 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.03 -9.28 -40.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358718985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.567 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds