Wall clock time and date at job start Fri Apr 10 2020 22:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47247 * 2 1 4 4 C 1.53008 * 109.49566 * 299.93842 * 3 2 1 5 5 C 1.53035 * 109.49696 * 179.84202 * 3 2 1 6 6 C 1.53042 * 109.53595 * 178.68526 * 5 3 2 7 7 C 1.52761 * 109.38534 * 61.23732 * 6 5 3 8 8 N 1.46923 * 109.00956 * 305.58603 * 7 6 5 9 9 C 1.34771 * 120.63538 * 233.58691 * 8 7 6 10 10 O 1.21585 * 120.00369 * 184.74388 * 9 8 7 11 11 N 1.34781 * 119.99766 * 4.74260 * 9 8 7 12 12 C 1.46498 * 119.99837 * 174.92355 * 11 9 8 13 13 C 1.53003 * 109.46851 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47012 * 60.00407 * 13 12 11 15 15 C 1.52994 * 109.47581 * 300.00090 * 13 12 11 16 16 C 1.53003 * 109.47066 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.46923 * 180.02562 * 16 13 12 18 18 H 1.07991 * 120.00279 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99402 * 179.72897 * 17 16 13 20 20 N 1.31514 * 120.00270 * 0.27274 * 19 17 16 21 21 Si 1.86803 * 119.99472 * 180.27570 * 19 17 16 22 22 H 1.48497 * 109.47232 * 59.99810 * 21 19 17 23 23 H 1.48498 * 109.46849 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47067 * 299.99596 * 21 19 17 25 25 C 1.46928 * 118.73654 * 53.30962 * 8 7 6 26 26 H 1.09005 * 109.46903 * 300.00236 * 1 2 3 27 27 H 1.09001 * 109.47556 * 59.99672 * 1 2 3 28 28 H 1.09001 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47036 * 240.00251 * 2 1 3 30 30 H 1.08998 * 109.47066 * 120.00267 * 2 1 3 31 31 H 1.09001 * 109.46714 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46717 * 300.06076 * 4 3 2 33 33 H 1.08993 * 109.47376 * 60.06463 * 4 3 2 34 34 H 1.09003 * 109.46106 * 298.69840 * 5 3 2 35 35 H 1.08999 * 109.46265 * 58.66187 * 5 3 2 36 36 H 1.09004 * 109.49726 * 181.31523 * 6 5 3 37 37 H 1.08997 * 109.49761 * 301.37490 * 6 5 3 38 38 H 1.09001 * 109.50635 * 185.70540 * 7 6 5 39 39 H 1.08996 * 109.43198 * 65.42575 * 7 6 5 40 40 H 0.97004 * 119.99916 * 354.92494 * 11 9 8 41 41 H 1.09005 * 109.46965 * 60.00433 * 12 11 9 42 42 H 1.09001 * 109.47384 * 299.99994 * 12 11 9 43 43 H 1.09003 * 109.47210 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.47057 * 300.00101 * 14 13 12 45 45 H 1.09001 * 109.47304 * 59.99859 * 14 13 12 46 46 H 1.08997 * 109.47028 * 300.00138 * 15 13 12 47 47 H 1.09007 * 109.47236 * 59.99920 * 15 13 12 48 48 H 1.08994 * 109.47465 * 179.97438 * 15 13 12 49 49 H 1.09005 * 109.46780 * 60.00512 * 16 13 12 50 50 H 1.09001 * 109.47354 * 300.00205 * 16 13 12 51 51 H 0.96997 * 119.99949 * 180.02562 * 20 19 17 52 52 H 1.08999 * 109.58627 * 66.42838 * 25 8 7 53 53 H 1.09001 * 109.59082 * 186.71161 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5316 2.1639 -1.2499 5 6 3.5704 1.4431 0.0040 6 6 4.0816 2.8853 -0.0291 7 6 3.5941 3.6247 1.2155 8 7 2.1324 3.5042 1.3020 9 6 1.3587 4.6014 1.4205 10 8 0.1587 4.4850 1.5778 11 7 1.9153 5.8276 1.3646 12 6 1.0640 7.0198 1.3815 13 6 1.9394 8.2726 1.3094 14 6 2.7582 8.2488 0.0171 15 6 2.8850 8.3040 2.5117 16 6 1.0504 9.5177 1.3264 17 6 1.9127 10.7516 1.2547 18 1 2.9871 10.6572 1.2019 19 6 1.3293 12.0009 1.2504 20 7 0.0207 12.1158 1.3143 21 14 2.3977 13.5301 1.1538 22 1 3.1919 13.5007 -0.1006 23 1 1.5345 14.7384 1.1644 24 1 3.3158 13.5670 2.3203 25 6 1.5297 2.1653 1.2506 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8956 3.1913 -1.2496 32 1 1.8950 1.6493 -2.1394 33 1 0.4417 2.1652 -1.2506 34 1 3.9314 0.9506 0.9069 35 1 3.9361 0.9080 -0.8724 36 1 5.1715 2.8845 -0.0498 37 1 3.7012 3.3857 -0.9195 38 1 3.8706 4.6768 1.1455 39 1 4.0503 3.1832 2.1016 40 1 2.8795 5.9208 1.3132 41 1 0.4810 7.0369 2.3024 42 1 0.3901 6.9972 0.5251 43 1 3.3816 9.1415 -0.0345 44 1 3.3915 7.3618 0.0045 45 1 2.0846 8.2265 -0.8395 46 1 2.3017 8.3209 3.4323 47 1 3.5184 7.4169 2.4992 48 1 3.5089 9.1962 2.4601 49 1 0.4667 9.5348 2.2468 50 1 0.3770 9.4951 0.4695 51 1 -0.3897 12.9947 1.3109 52 1 1.8140 1.6022 2.1395 53 1 0.4443 2.2545 1.2063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358718985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:22 Heat of formation + Delta-G solvation = -74.667140 kcal Electronic energy + Delta-G solvation = -27563.292409 eV Core-core repulsion = 24047.145246 eV Total energy + Delta-G solvation = -3516.147163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74834 -39.83625 -38.52473 -36.07411 -35.12367 -33.82870 -33.18569 -30.57141 -29.15036 -28.33105 -27.96944 -27.60009 -26.15605 -25.08259 -24.56786 -22.41344 -21.08935 -20.18587 -19.24918 -18.86297 -18.34564 -17.30514 -16.72128 -16.50084 -16.17308 -15.76817 -15.57476 -15.43379 -15.15066 -14.70570 -14.65109 -14.47179 -14.29560 -14.24320 -13.93737 -13.84590 -13.66835 -13.21116 -12.97938 -12.83771 -12.74881 -12.59284 -12.55935 -12.33263 -12.24511 -12.21584 -12.09935 -11.98927 -11.81897 -11.53912 -11.47987 -11.36785 -11.13322 -11.07782 -10.94998 -10.84221 -10.49868 -10.17963 -9.40146 -8.12862 -6.20994 1.43127 1.45503 1.52613 1.66235 2.15296 2.45070 2.97417 3.21418 3.67438 3.80381 3.86051 3.97238 4.08421 4.10505 4.18053 4.23842 4.32499 4.39494 4.47366 4.59236 4.68788 4.71664 4.72380 4.75272 4.78571 4.83454 4.86437 4.90108 4.95536 5.01772 5.09706 5.10711 5.11768 5.14885 5.20107 5.22958 5.29412 5.37534 5.39190 5.46044 5.49000 5.49859 5.53745 5.56072 5.59618 5.68534 5.80552 5.90345 5.97028 6.31299 6.93415 7.00232 7.46685 7.57836 8.99634 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.002761 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.585632 B =10139.522099 C =10518.747532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C -0.070 4.070 4 C -0.138 4.138 5 C -0.103 4.103 6 C -0.135 4.135 7 C 0.103 3.897 8 N -0.622 5.622 9 C 0.698 3.302 10 O -0.641 6.641 11 N -0.726 5.726 12 C 0.161 3.839 13 C -0.063 4.063 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.041 3.959 17 C -0.514 4.514 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.136 3.864 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.407 0.593 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.066 0.934 48 H 0.058 0.942 49 H -0.015 1.015 50 H -0.015 1.015 51 H 0.259 0.741 52 H 0.074 0.926 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.619 -25.747 -3.065 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.141 4.141 3 C -0.071 4.071 4 C -0.195 4.195 5 C -0.141 4.141 6 C -0.173 4.173 7 C -0.019 4.019 8 N -0.359 5.359 9 C 0.400 3.600 10 O -0.523 6.523 11 N -0.385 5.385 12 C 0.036 3.964 13 C -0.064 4.064 14 C -0.176 4.176 15 C -0.177 4.177 16 C 0.003 3.997 17 C -0.552 4.552 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.191 1.191 25 C 0.013 3.987 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.247 0.753 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.003 0.997 50 H 0.003 0.997 51 H 0.068 0.932 52 H 0.093 0.907 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.645 -25.689 -2.955 28.359 hybrid contribution -0.230 1.478 -0.006 1.496 sum 11.415 -24.211 -2.961 26.930 Atomic orbital electron populations 1.21906 0.96640 1.01820 1.01392 1.21491 0.95283 0.94151 1.03205 1.20932 0.96761 0.95520 0.93934 1.21869 1.00173 0.99841 0.97590 1.21556 0.92673 0.96417 1.03406 1.21902 1.02082 0.96173 0.97118 1.21830 0.78289 1.01664 1.00095 1.47270 1.07143 1.04762 1.76704 1.16097 0.84704 0.81416 0.77797 1.90863 1.15582 1.86354 1.59522 1.45205 1.10660 1.03571 1.79024 1.21045 0.92420 0.83193 0.99698 1.20704 0.95919 0.92578 0.97155 1.21668 0.99099 1.01520 0.95300 1.21671 0.98434 1.01564 0.96000 1.18960 0.94087 0.92329 0.94310 1.21556 0.93893 0.91020 1.48685 0.90795 1.25968 0.96028 1.02791 0.95468 1.70122 1.11153 1.24335 1.52446 0.85583 0.78508 0.78247 0.79209 1.19071 1.21784 1.19074 1.21657 0.98286 0.80676 0.98085 0.93706 0.93280 0.91754 0.90446 0.90638 0.94045 0.91444 0.94168 0.90437 0.90342 0.88272 0.92221 0.90160 0.89466 0.75298 0.94153 0.94173 0.92327 0.91473 0.94559 0.94548 0.91474 0.92299 0.99669 0.99656 0.93182 0.90746 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.22 71.98 0.66 -1.73 16 2 C -0.10 -1.23 4.99 30.59 0.15 -1.08 16 3 C -0.07 -1.05 0.54 -52.10 -0.03 -1.08 16 4 C -0.14 -2.57 7.63 71.98 0.55 -2.02 16 5 C -0.10 -1.07 4.71 30.62 0.14 -0.92 16 6 C -0.13 -1.52 5.72 30.53 0.17 -1.35 16 7 C 0.10 1.52 6.40 86.22 0.55 2.07 16 8 N -0.62 -14.30 2.42 -837.75 -2.03 -16.32 16 9 C 0.70 22.66 8.30 179.05 1.49 24.14 16 10 O -0.64 -27.06 15.78 -3.98 -0.06 -27.13 16 11 N -0.73 -21.85 4.87 -478.53 -2.33 -24.19 16 12 C 0.16 6.12 4.57 86.38 0.39 6.52 16 13 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 14 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 15 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 16 C 0.04 2.11 4.04 29.85 0.12 2.23 16 17 C -0.51 -27.62 7.65 25.60 0.20 -27.42 16 18 H 0.07 3.68 5.68 -2.92 -0.02 3.67 16 19 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 20 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 21 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.14 2.81 4.57 86.36 0.39 3.20 16 26 H 0.04 0.79 6.56 -2.38 -0.02 0.78 16 27 H 0.05 0.82 6.43 -2.39 -0.02 0.81 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.91 5.97 -2.39 -0.01 0.90 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.88 6.44 -2.39 -0.02 0.87 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.86 6.34 -2.39 -0.02 0.85 16 38 H 0.08 1.12 5.57 -2.39 -0.01 1.11 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.41 9.65 3.62 -92.70 -0.34 9.31 16 41 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 2.10 6.61 -2.39 -0.02 2.08 16 44 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 45 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.74 6.86 -2.38 -0.02 1.72 16 48 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 49 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 50 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 51 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 52 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.07 1.79 5.65 -2.39 -0.01 1.77 16 Total: -1.00 -71.49 387.32 4.82 -66.67 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.54 Total: 19.37 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.39 Total: -6.68 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.07 Total: -97.88 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.49 4.82 -66.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358718985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.000 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds