Wall clock time and date at job start Fri Apr 10 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21582 * 120.00318 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99640 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00002 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47403 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47101 * 299.99781 * 7 6 5 9 9 C 1.53001 * 109.46852 * 60.00038 * 7 6 5 10 10 C 1.52996 * 109.47313 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.47430 * 179.97438 * 10 7 6 12 12 H 1.07996 * 119.99682 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00138 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00087 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47363 * 59.99661 * 15 13 11 17 17 H 1.48492 * 109.47570 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46975 * 300.00356 * 15 13 11 19 19 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 20 20 H 1.08999 * 110.43414 * 181.09447 * 19 2 1 21 21 C 1.54886 * 110.48824 * 58.54785 * 19 2 1 22 22 C 1.54887 * 102.75090 * 203.38066 * 21 19 2 23 23 C 1.54272 * 104.19503 * 37.94062 * 22 21 19 24 24 C 1.53002 * 110.03086 * 95.67781 * 23 22 21 25 25 C 1.52995 * 110.03141 * 217.10453 * 23 22 21 26 26 C 1.53880 * 106.59971 * 336.39216 * 23 22 21 27 27 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 30 30 H 0.97001 * 120.00361 * 359.97438 * 5 3 2 31 31 H 1.09002 * 109.47093 * 299.99866 * 6 5 3 32 32 H 1.09006 * 109.47588 * 59.99611 * 6 5 3 33 33 H 1.09002 * 109.46947 * 60.00098 * 8 7 6 34 34 H 1.09002 * 109.47058 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47177 * 299.99961 * 8 7 6 36 36 H 1.08995 * 109.47372 * 60.00416 * 9 7 6 37 37 H 1.09002 * 109.47140 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.47215 * 299.99913 * 9 7 6 39 39 H 1.09002 * 109.47382 * 300.00337 * 10 7 6 40 40 H 1.09006 * 109.47389 * 60.00137 * 10 7 6 41 41 H 0.96999 * 120.00245 * 180.02562 * 14 13 11 42 42 H 1.09001 * 110.75210 * 321.69724 * 21 19 2 43 43 H 1.08997 * 110.75454 * 84.87595 * 21 19 2 44 44 H 1.08999 * 110.48867 * 156.62143 * 22 21 19 45 45 H 1.08994 * 110.48526 * 279.13208 * 22 21 19 46 46 H 1.09000 * 109.47401 * 61.45232 * 24 23 22 47 47 H 1.09001 * 109.46903 * 181.45391 * 24 23 22 48 48 H 1.09004 * 109.46805 * 301.44866 * 24 23 22 49 49 H 1.09003 * 109.47281 * 58.55002 * 25 23 22 50 50 H 1.09006 * 109.47060 * 178.54529 * 25 23 22 51 51 H 1.08996 * 109.47482 * 298.54514 * 25 23 22 52 52 H 1.08994 * 110.02814 * 240.71460 * 26 23 22 53 53 H 1.08999 * 110.02945 * 119.28137 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0023 8 6 0.3242 4.6842 -1.2518 9 6 0.3232 4.6858 1.2467 10 6 1.9682 6.0910 -0.0022 11 6 0.9890 7.2365 -0.0040 12 1 -0.0728 7.0392 -0.0046 13 6 1.4486 8.5364 -0.0048 14 7 2.7416 8.7768 -0.0045 15 14 0.2348 9.9563 -0.0063 16 1 -0.6195 9.8785 1.2060 17 1 0.9772 11.2423 -0.0063 18 1 -0.6186 9.8766 -1.2190 19 6 2.1975 -1.2687 0.0006 20 1 3.2722 -1.0877 0.0200 21 6 1.8130 -2.1173 -1.2368 22 6 2.1540 -3.5583 -0.7825 23 6 1.7441 -3.5931 0.7044 24 6 0.3335 -4.1687 0.8458 25 6 2.7383 -4.4390 1.5024 26 6 1.7717 -2.1374 1.2023 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 0.4950 2.3344 -0.0013 31 1 2.8241 3.6612 0.8889 32 1 2.8243 3.6605 -0.8911 33 1 -0.2208 3.7402 -1.2513 34 1 -0.3844 5.5125 -1.2524 35 1 0.9512 4.7414 -2.1415 36 1 0.9495 4.7442 2.1369 37 1 -0.3854 5.5140 1.2457 38 1 -0.2218 3.7418 1.2472 39 1 2.5943 6.1491 0.8882 40 1 2.5956 6.1485 -0.8918 41 1 3.0649 9.6913 -0.0047 42 1 0.7492 -2.0225 -1.4546 43 1 2.4100 -1.8306 -2.1024 44 1 1.5772 -4.2852 -1.3544 45 1 3.2215 -3.7497 -0.8905 46 1 0.3187 -5.1911 0.4681 47 1 0.0433 -4.1652 1.8965 48 1 -0.3664 -3.5597 0.2735 49 1 3.7393 -4.0213 1.3946 50 1 2.4549 -4.4363 2.5550 51 1 2.7290 -5.4620 1.1263 52 1 2.4935 -2.0336 2.0124 53 1 0.7802 -1.8410 1.5446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358731121.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:25 Heat of formation + Delta-G solvation = -59.543620 kcal Electronic energy + Delta-G solvation = -26972.149675 eV Core-core repulsion = 23456.658317 eV Total energy + Delta-G solvation = -3515.491358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48159 -39.00087 -37.14166 -35.22389 -33.60072 -32.17761 -31.31028 -28.80790 -27.65315 -27.18312 -26.88857 -26.49630 -26.00621 -24.37922 -22.83465 -21.02762 -19.47105 -19.01860 -18.72974 -17.50333 -16.52581 -16.24698 -15.56850 -15.39868 -14.93614 -14.50474 -14.15805 -14.13183 -13.99209 -13.83747 -13.54829 -13.17886 -13.06200 -13.01866 -12.79254 -12.39506 -12.34964 -12.13727 -12.04975 -11.94997 -11.74657 -11.54854 -11.12894 -11.05629 -10.98907 -10.86090 -10.83115 -10.73644 -10.62964 -10.61429 -10.37027 -10.24745 -9.91340 -9.85262 -9.18069 -8.91787 -8.83676 -8.38894 -8.34151 -5.98259 -3.99629 2.76064 3.32718 3.38230 3.39303 3.40033 4.09374 4.27201 4.36075 4.46533 4.48876 4.87251 4.93808 5.00894 5.07237 5.14569 5.22583 5.27108 5.29187 5.35192 5.37015 5.43807 5.51316 5.53928 5.61060 5.65798 5.67300 5.68197 5.75469 5.77313 5.84059 5.94678 6.00812 6.09118 6.13881 6.19354 6.24060 6.30504 6.44004 6.54340 6.63275 6.64422 6.83927 7.06252 7.09018 7.09284 7.17201 7.66118 7.78881 8.00305 8.15463 8.42214 8.81813 9.04922 9.63214 11.13141 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.002387 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.357669 B =11728.716067 C =11939.014296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.630 5.630 3 C 0.702 3.298 4 O -0.594 6.594 5 N -0.736 5.736 6 C 0.146 3.854 7 C -0.072 4.072 8 C -0.125 4.125 9 C -0.126 4.126 10 C 0.036 3.964 11 C -0.511 4.511 12 H 0.058 0.942 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.155 3.845 20 H 0.106 0.894 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.069 4.069 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.127 4.127 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.394 0.606 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.053 0.947 52 H 0.069 0.931 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 -26.312 0.409 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.367 5.367 3 C 0.403 3.597 4 O -0.472 6.472 5 N -0.393 5.393 6 C 0.022 3.978 7 C -0.072 4.072 8 C -0.183 4.183 9 C -0.183 4.183 10 C -0.001 4.001 11 C -0.549 4.549 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C 0.051 3.949 20 H 0.124 0.876 21 C -0.174 4.174 22 C -0.151 4.151 23 C -0.069 4.069 24 C -0.194 4.194 25 C -0.197 4.197 26 C -0.166 4.166 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.088 0.912 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.322 -26.111 0.418 26.652 hybrid contribution -1.171 0.915 0.026 1.486 sum -6.493 -25.197 0.445 26.024 Atomic orbital electron populations 1.21660 0.80543 1.02831 1.01534 1.47003 1.05912 1.04812 1.78953 1.15964 0.85387 0.80458 0.77891 1.90891 1.11664 1.86227 1.58416 1.45523 1.09912 1.04961 1.78878 1.21489 0.94349 0.80296 1.01649 1.20906 0.95347 0.96002 0.94993 1.21747 0.99606 0.99547 0.97379 1.21747 0.99599 0.99568 0.97368 1.19085 0.95001 0.88498 0.97535 1.21139 0.92887 0.90538 1.50369 0.92343 1.25015 0.94976 0.98939 0.95591 1.69955 1.12462 1.20177 1.50770 0.86709 0.81224 0.81849 0.78484 1.20356 1.21417 1.20351 1.21775 0.97938 0.81268 0.93935 0.87599 1.22864 1.01737 0.94775 0.98041 1.22425 1.01445 0.96446 0.94763 1.21128 0.95677 0.94788 0.95313 1.21901 0.95491 1.00440 1.01564 1.21923 0.98792 0.99356 0.99640 1.22662 1.02326 0.93486 0.98110 0.92840 0.90843 0.91483 0.76971 0.92053 0.92074 0.95474 0.91473 0.93349 0.93358 0.91490 0.95430 0.96305 0.96309 0.92990 0.91117 0.91174 0.91426 0.91215 0.92759 0.92728 0.92653 0.92395 0.92726 0.92759 0.91248 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 8.98 59.85 0.54 1.21 16 2 N -0.63 -7.63 2.86 -177.76 -0.51 -8.14 16 3 C 0.70 11.43 8.28 -86.92 -0.72 10.71 16 4 O -0.59 -12.08 15.70 5.29 0.08 -12.00 16 5 N -0.74 -11.39 4.82 -65.22 -0.31 -11.70 16 6 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 7 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 8 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 9 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 10 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 11 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 12 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.16 1.68 3.27 -66.27 -0.22 1.47 16 20 H 0.11 1.42 6.97 -51.93 -0.36 1.06 16 21 C -0.14 -1.18 6.43 -24.74 -0.16 -1.34 16 22 C -0.11 -0.81 5.90 -25.07 -0.15 -0.96 16 23 C -0.07 -0.49 0.94 -153.39 -0.14 -0.63 16 24 C -0.14 -0.83 8.15 37.16 0.30 -0.53 16 25 C -0.14 -0.93 8.16 37.15 0.30 -0.63 16 26 C -0.13 -1.12 5.73 -25.61 -0.15 -1.27 16 27 H 0.05 0.42 7.88 -51.93 -0.41 0.01 16 28 H 0.07 0.50 6.27 -51.93 -0.33 0.18 16 29 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 30 H 0.39 5.18 3.89 -40.82 -0.16 5.02 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 34 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 38 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 0.56 6.27 -51.93 -0.33 0.23 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 45 H 0.07 0.50 7.86 -51.93 -0.41 0.10 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 53 H 0.07 0.61 6.35 -51.93 -0.33 0.28 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -31.27 395.86 -9.21 -40.48 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -9.78 Total: 1.19 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.37 Total: -6.22 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.09 Total: -45.63 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.27 -9.21 -40.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358731121.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.065 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds