Wall clock time and date at job start Fri Apr 10 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21582 * 120.00318 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99640 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00002 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47403 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47101 * 299.99781 * 7 6 5 9 9 C 1.53001 * 109.46852 * 60.00038 * 7 6 5 10 10 C 1.52996 * 109.47313 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.47430 * 179.97438 * 10 7 6 12 12 H 1.07996 * 119.99682 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00138 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00087 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47363 * 59.99661 * 15 13 11 17 17 H 1.48492 * 109.47570 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46975 * 300.00356 * 15 13 11 19 19 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 20 20 H 1.08999 * 110.43414 * 181.09447 * 19 2 1 21 21 C 1.54886 * 110.48824 * 58.54785 * 19 2 1 22 22 C 1.54887 * 102.75090 * 203.38066 * 21 19 2 23 23 C 1.54272 * 104.19503 * 37.94062 * 22 21 19 24 24 C 1.53002 * 110.03086 * 95.67781 * 23 22 21 25 25 C 1.52995 * 110.03141 * 217.10453 * 23 22 21 26 26 C 1.53880 * 106.59971 * 336.39216 * 23 22 21 27 27 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 30 30 H 0.97001 * 120.00361 * 359.97438 * 5 3 2 31 31 H 1.09002 * 109.47093 * 299.99866 * 6 5 3 32 32 H 1.09006 * 109.47588 * 59.99611 * 6 5 3 33 33 H 1.09002 * 109.46947 * 60.00098 * 8 7 6 34 34 H 1.09002 * 109.47058 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47177 * 299.99961 * 8 7 6 36 36 H 1.08995 * 109.47372 * 60.00416 * 9 7 6 37 37 H 1.09002 * 109.47140 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.47215 * 299.99913 * 9 7 6 39 39 H 1.09002 * 109.47382 * 300.00337 * 10 7 6 40 40 H 1.09006 * 109.47389 * 60.00137 * 10 7 6 41 41 H 0.96999 * 120.00245 * 180.02562 * 14 13 11 42 42 H 1.09001 * 110.75210 * 321.69724 * 21 19 2 43 43 H 1.08997 * 110.75454 * 84.87595 * 21 19 2 44 44 H 1.08999 * 110.48867 * 156.62143 * 22 21 19 45 45 H 1.08994 * 110.48526 * 279.13208 * 22 21 19 46 46 H 1.09000 * 109.47401 * 61.45232 * 24 23 22 47 47 H 1.09001 * 109.46903 * 181.45391 * 24 23 22 48 48 H 1.09004 * 109.46805 * 301.44866 * 24 23 22 49 49 H 1.09003 * 109.47281 * 58.55002 * 25 23 22 50 50 H 1.09006 * 109.47060 * 178.54529 * 25 23 22 51 51 H 1.08996 * 109.47482 * 298.54514 * 25 23 22 52 52 H 1.08994 * 110.02814 * 240.71460 * 26 23 22 53 53 H 1.08999 * 110.02945 * 119.28137 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0023 8 6 0.3242 4.6842 -1.2518 9 6 0.3232 4.6858 1.2467 10 6 1.9682 6.0910 -0.0022 11 6 0.9890 7.2365 -0.0040 12 1 -0.0728 7.0392 -0.0046 13 6 1.4486 8.5364 -0.0048 14 7 2.7416 8.7768 -0.0045 15 14 0.2348 9.9563 -0.0063 16 1 -0.6195 9.8785 1.2060 17 1 0.9772 11.2423 -0.0063 18 1 -0.6186 9.8766 -1.2190 19 6 2.1975 -1.2687 0.0006 20 1 3.2722 -1.0877 0.0200 21 6 1.8130 -2.1173 -1.2368 22 6 2.1540 -3.5583 -0.7825 23 6 1.7441 -3.5931 0.7044 24 6 0.3335 -4.1687 0.8458 25 6 2.7383 -4.4390 1.5024 26 6 1.7717 -2.1374 1.2023 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 0.4950 2.3344 -0.0013 31 1 2.8241 3.6612 0.8889 32 1 2.8243 3.6605 -0.8911 33 1 -0.2208 3.7402 -1.2513 34 1 -0.3844 5.5125 -1.2524 35 1 0.9512 4.7414 -2.1415 36 1 0.9495 4.7442 2.1369 37 1 -0.3854 5.5140 1.2457 38 1 -0.2218 3.7418 1.2472 39 1 2.5943 6.1491 0.8882 40 1 2.5956 6.1485 -0.8918 41 1 3.0649 9.6913 -0.0047 42 1 0.7492 -2.0225 -1.4546 43 1 2.4100 -1.8306 -2.1024 44 1 1.5772 -4.2852 -1.3544 45 1 3.2215 -3.7497 -0.8905 46 1 0.3187 -5.1911 0.4681 47 1 0.0433 -4.1652 1.8965 48 1 -0.3664 -3.5597 0.2735 49 1 3.7393 -4.0213 1.3946 50 1 2.4549 -4.4363 2.5550 51 1 2.7290 -5.4620 1.1263 52 1 2.4935 -2.0336 2.0124 53 1 0.7802 -1.8410 1.5446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358731121.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:25 Heat of formation + Delta-G solvation = -76.611017 kcal Electronic energy + Delta-G solvation = -26972.889773 eV Core-core repulsion = 23456.658317 eV Total energy + Delta-G solvation = -3516.231456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56811 -39.95655 -38.64490 -36.26699 -35.23726 -33.93415 -32.14085 -29.59479 -29.03605 -28.17982 -27.96328 -27.86466 -27.32200 -25.32563 -24.55158 -22.09521 -20.62891 -19.99935 -19.60600 -18.90618 -18.34676 -17.56364 -16.73896 -16.52092 -16.22427 -15.84404 -15.45656 -15.30854 -14.89181 -14.68905 -14.53325 -14.38149 -14.30301 -14.06958 -13.93648 -13.77565 -13.64368 -13.16937 -12.89935 -12.83157 -12.74508 -12.67280 -12.57712 -12.32663 -12.31219 -12.28643 -12.21739 -11.99100 -11.68774 -11.53406 -11.40355 -11.36735 -11.31634 -11.26886 -10.96917 -10.85383 -10.49641 -10.18813 -9.43857 -8.12592 -6.20721 1.43324 1.45714 1.52833 1.65066 2.12438 2.45242 3.01142 3.21583 3.60337 3.67065 3.86645 3.97213 4.09038 4.20059 4.22842 4.27013 4.36411 4.44154 4.50076 4.55712 4.58872 4.66323 4.69429 4.72994 4.76932 4.83686 4.87692 4.94847 4.96230 4.98978 5.05474 5.10829 5.12412 5.15624 5.16933 5.22084 5.29667 5.39351 5.43200 5.45727 5.48956 5.50327 5.54006 5.58066 5.59433 5.63682 5.80906 5.90617 5.98842 6.31451 6.93516 6.99224 7.46877 7.56398 8.99810 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.002387 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.357669 B =11728.716067 C =11939.014296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.621 5.621 3 C 0.695 3.305 4 O -0.643 6.643 5 N -0.723 5.723 6 C 0.161 3.839 7 C -0.063 4.063 8 C -0.120 4.120 9 C -0.120 4.120 10 C 0.040 3.960 11 C -0.513 4.513 12 H 0.074 0.926 13 C -0.007 4.007 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.266 1.266 17 H -0.292 1.292 18 H -0.266 1.266 19 C 0.147 3.853 20 H 0.070 0.930 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.065 4.065 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.120 4.120 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.409 0.591 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.068 0.932 39 H -0.015 1.015 40 H -0.015 1.015 41 H 0.259 0.741 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.046 0.954 50 H 0.055 0.945 51 H 0.065 0.935 52 H 0.054 0.946 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 -28.362 0.299 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.357 5.357 3 C 0.396 3.604 4 O -0.525 6.525 5 N -0.381 5.381 6 C 0.036 3.964 7 C -0.063 4.063 8 C -0.177 4.177 9 C -0.177 4.177 10 C 0.002 3.998 11 C -0.551 4.551 12 H 0.092 0.908 13 C -0.204 4.204 14 N -0.580 5.580 15 Si 0.785 3.215 16 H -0.191 1.191 17 H -0.218 1.218 18 H -0.191 1.191 19 C 0.043 3.957 20 H 0.088 0.912 21 C -0.167 4.167 22 C -0.147 4.147 23 C -0.065 4.065 24 C -0.191 4.191 25 C -0.197 4.197 26 C -0.159 4.159 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.248 0.752 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.073 0.927 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.174 -28.213 0.309 29.668 hybrid contribution 0.064 1.477 0.067 1.480 sum -9.109 -26.735 0.376 28.247 Atomic orbital electron populations 1.21984 0.77762 1.04527 1.03089 1.47068 1.07577 1.03636 1.77376 1.16183 0.84914 0.81524 0.77752 1.90862 1.14107 1.87045 1.60528 1.45164 1.10321 1.03704 1.78912 1.21053 0.93972 0.81656 0.99736 1.20699 0.95343 0.93089 0.97198 1.21676 0.98995 1.01404 0.95621 1.21676 0.98987 1.01401 0.95625 1.18971 0.94645 0.91848 0.94331 1.21549 0.93784 0.90930 1.48823 0.90791 1.25976 0.96691 1.02196 0.95489 1.70124 1.14761 1.20619 1.52525 0.85572 0.78814 0.77888 0.79196 1.19093 1.21816 1.19067 1.21876 0.96135 0.81282 0.96391 0.91198 1.22816 1.02412 0.95096 0.96329 1.22420 1.01504 0.95724 0.95004 1.21110 0.96797 0.93543 0.95045 1.21882 0.94350 1.00979 1.01905 1.21922 0.98152 0.99849 0.99814 1.22610 1.02223 0.94348 0.96697 0.91298 0.88322 0.90702 0.75192 0.94154 0.94128 0.91366 0.92317 0.94525 0.94573 0.92328 0.91366 0.99652 0.99637 0.93199 0.89433 0.92456 0.89651 0.91776 0.91842 0.92579 0.91997 0.93470 0.92567 0.91636 0.92671 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 8.98 127.77 1.15 2.07 16 2 N -0.62 -14.17 2.86 -834.57 -2.39 -16.56 16 3 C 0.70 22.57 8.28 179.05 1.48 24.06 16 4 O -0.64 -27.36 15.70 -3.97 -0.06 -27.42 16 5 N -0.72 -21.61 4.82 -478.53 -2.31 -23.92 16 6 C 0.16 6.08 4.56 86.38 0.39 6.47 16 7 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 8 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 9 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 10 C 0.04 2.05 4.04 29.85 0.12 2.17 16 11 C -0.51 -27.55 7.65 25.60 0.20 -27.35 16 12 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 13 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 14 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 15 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 C 0.15 3.11 3.27 46.07 0.15 3.26 16 20 H 0.07 2.00 6.97 -2.39 -0.02 1.98 16 21 C -0.13 -2.00 6.43 31.88 0.21 -1.80 16 22 C -0.11 -1.33 5.90 31.67 0.19 -1.15 16 23 C -0.06 -0.77 0.94 -51.45 -0.05 -0.82 16 24 C -0.13 -1.17 8.15 71.98 0.59 -0.58 16 25 C -0.14 -1.67 8.16 71.98 0.59 -1.08 16 26 C -0.12 -1.95 5.73 31.32 0.18 -1.77 16 27 H 0.07 0.78 7.88 -2.39 -0.02 0.76 16 28 H 0.10 0.88 6.27 -2.39 -0.01 0.87 16 29 H 0.07 0.92 6.36 -2.38 -0.02 0.91 16 30 H 0.41 9.47 3.89 -92.71 -0.36 9.11 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 34 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 38 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 39 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.09 1.08 6.27 -2.39 -0.01 1.07 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 0.79 7.84 -2.39 -0.02 0.77 16 45 H 0.06 0.87 7.86 -2.39 -0.02 0.85 16 46 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.05 1.05 7.67 -2.39 -0.02 1.03 16 53 H 0.08 1.16 6.35 -2.39 -0.02 1.15 16 Total: -1.00 -71.90 395.86 4.83 -67.07 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.50 Total: 18.32 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.78 Total: -5.82 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.41 Total: -97.79 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.90 4.83 -67.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358731121.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.544 kcal (2) G-P(sol) polarization free energy of solvation -71.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds