Wall clock time and date at job start Fri Apr 10 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21582 * 120.00318 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99640 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00002 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47403 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47101 * 299.99781 * 7 6 5 9 9 C 1.53001 * 109.46852 * 60.00038 * 7 6 5 10 10 C 1.52996 * 109.47313 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.47430 * 179.97438 * 10 7 6 12 12 H 1.07996 * 119.99682 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00138 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00087 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46760 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47311 * 119.99574 * 15 13 11 18 18 H 1.48497 * 109.47452 * 240.00158 * 15 13 11 19 19 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 20 20 H 1.09002 * 110.67152 * 178.22320 * 19 2 1 21 21 C 1.54890 * 110.75459 * 301.45515 * 19 2 1 22 22 C 1.54265 * 104.19456 * 156.25664 * 21 19 2 23 23 C 1.53874 * 106.60163 * 336.39141 * 22 21 19 24 24 C 1.52995 * 110.03626 * 119.28276 * 23 22 21 25 25 C 1.52992 * 110.03030 * 240.66900 * 23 22 21 26 26 C 1.54273 * 106.59435 * 359.97438 * 23 22 21 27 27 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 30 30 H 0.97001 * 120.00361 * 359.97438 * 5 3 2 31 31 H 1.09002 * 109.47093 * 299.99866 * 6 5 3 32 32 H 1.09006 * 109.47588 * 59.99611 * 6 5 3 33 33 H 1.09002 * 109.46947 * 60.00098 * 8 7 6 34 34 H 1.09002 * 109.47058 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47177 * 299.99961 * 8 7 6 36 36 H 1.08995 * 109.47372 * 60.00416 * 9 7 6 37 37 H 1.09002 * 109.47140 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.47215 * 299.99913 * 9 7 6 39 39 H 1.09002 * 109.47382 * 300.00337 * 10 7 6 40 40 H 1.09006 * 109.47389 * 60.00137 * 10 7 6 41 41 H 0.96999 * 120.00245 * 180.02562 * 14 13 11 42 42 H 1.09005 * 110.49096 * 274.93431 * 21 19 2 43 43 H 1.08998 * 110.49045 * 37.44458 * 21 19 2 44 44 H 1.09001 * 110.03005 * 95.67787 * 22 21 19 45 45 H 1.09001 * 110.03268 * 217.09993 * 22 21 19 46 46 H 1.09000 * 109.46943 * 61.45082 * 24 23 22 47 47 H 1.08991 * 109.47529 * 181.45871 * 24 23 22 48 48 H 1.08999 * 109.46959 * 301.45900 * 24 23 22 49 49 H 1.09003 * 109.48001 * 58.54630 * 25 23 22 50 50 H 1.09007 * 109.46911 * 178.54432 * 25 23 22 51 51 H 1.09002 * 109.47593 * 298.54164 * 25 23 22 52 52 H 1.09001 * 110.48647 * 264.93037 * 26 23 22 53 53 H 1.09004 * 110.47870 * 142.28902 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0023 8 6 0.3242 4.6842 -1.2518 9 6 0.3232 4.6858 1.2467 10 6 1.9682 6.0910 -0.0022 11 6 0.9890 7.2365 -0.0040 12 1 -0.0728 7.0392 -0.0046 13 6 1.4486 8.5364 -0.0048 14 7 2.7416 8.7768 -0.0045 15 14 0.2348 9.9563 -0.0063 16 1 -1.1511 9.4226 -0.0070 17 1 0.4447 10.7883 1.2057 18 1 0.4455 10.7865 -1.2193 19 6 2.1975 -1.2687 0.0006 20 1 3.2727 -1.0923 -0.0311 21 6 1.8174 -2.1214 1.2365 22 6 2.1390 -3.5689 0.8108 23 6 2.0954 -3.5949 -0.7271 24 6 3.4601 -4.0057 -1.2833 25 6 1.0195 -4.5723 -1.2043 26 6 1.7480 -2.1624 -1.1823 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 0.4950 2.3344 -0.0013 31 1 2.8241 3.6612 0.8889 32 1 2.8243 3.6605 -0.8911 33 1 -0.2208 3.7402 -1.2513 34 1 -0.3844 5.5125 -1.2524 35 1 0.9512 4.7414 -2.1415 36 1 0.9495 4.7442 2.1369 37 1 -0.3854 5.5140 1.2457 38 1 -0.2218 3.7418 1.2472 39 1 2.5943 6.1491 0.8882 40 1 2.5956 6.1485 -0.8918 41 1 3.0649 9.6913 -0.0047 42 1 2.4202 -1.8343 2.0982 43 1 0.7563 -2.0148 1.4619 44 1 3.1325 -3.8490 1.1610 45 1 1.3932 -4.2521 1.2172 46 1 3.7068 -5.0091 -0.9362 47 1 3.4263 -3.9961 -2.3727 48 1 4.2195 -3.3047 -0.9372 49 1 0.0517 -4.2722 -0.8024 50 1 0.9787 -4.5643 -2.2936 51 1 1.2613 -5.5769 -0.8572 52 1 0.6753 -2.0646 -1.3490 53 1 2.3006 -1.9048 -2.0859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358731122.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:27 Heat of formation + Delta-G solvation = -76.886234 kcal Electronic energy + Delta-G solvation = -26943.413371 eV Core-core repulsion = 23427.169981 eV Total energy + Delta-G solvation = -3516.243390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55408 -39.95378 -38.64818 -36.29056 -35.23754 -33.93302 -32.15417 -29.58061 -29.02628 -28.19754 -27.96239 -27.89032 -27.35645 -25.30796 -24.54257 -22.10639 -20.62181 -19.97296 -19.64353 -18.89979 -18.35382 -17.56311 -16.72677 -16.51633 -16.25692 -15.83378 -15.42527 -15.33546 -14.74405 -14.68467 -14.55419 -14.37988 -14.30980 -14.13250 -13.98782 -13.94051 -13.65720 -13.16481 -12.90995 -12.87493 -12.69746 -12.68034 -12.58733 -12.34536 -12.33653 -12.22338 -12.21816 -11.93721 -11.61166 -11.53919 -11.44029 -11.38220 -11.32041 -11.28039 -10.97268 -10.83711 -10.51543 -10.18696 -9.43348 -8.13101 -6.20986 1.42643 1.43411 1.55291 1.64749 2.12152 2.44913 3.01121 3.21399 3.59845 3.67519 3.85402 3.97239 4.09084 4.19705 4.22719 4.27646 4.37549 4.38018 4.51269 4.56103 4.58255 4.66755 4.69525 4.73067 4.76464 4.83570 4.85970 4.92178 4.96289 5.00607 5.04953 5.10783 5.12563 5.13957 5.15969 5.19918 5.30729 5.39788 5.41908 5.46041 5.49200 5.50343 5.54048 5.58426 5.58962 5.62571 5.80871 5.90718 5.98686 6.31382 6.93727 6.99194 7.46708 7.56267 8.99742 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.037170 B = 0.002378 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.122770 B =11772.323824 C =11976.538611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.621 5.621 3 C 0.695 3.305 4 O -0.643 6.643 5 N -0.723 5.723 6 C 0.161 3.839 7 C -0.063 4.063 8 C -0.120 4.120 9 C -0.120 4.120 10 C 0.039 3.961 11 C -0.510 4.510 12 H 0.074 0.926 13 C -0.008 4.008 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.255 1.255 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.146 3.854 20 H 0.071 0.929 21 C -0.128 4.128 22 C -0.108 4.108 23 C -0.065 4.065 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.119 4.119 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.409 0.591 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.068 0.932 39 H -0.015 1.015 40 H -0.015 1.015 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.062 0.938 52 H 0.088 0.912 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 -28.445 -0.596 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.356 5.356 3 C 0.396 3.604 4 O -0.525 6.525 5 N -0.381 5.381 6 C 0.036 3.964 7 C -0.063 4.063 8 C -0.177 4.177 9 C -0.177 4.177 10 C 0.001 3.999 11 C -0.548 4.548 12 H 0.092 0.908 13 C -0.204 4.204 14 N -0.581 5.581 15 Si 0.786 3.214 16 H -0.179 1.179 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.042 3.958 20 H 0.090 0.910 21 C -0.166 4.166 22 C -0.146 4.146 23 C -0.066 4.066 24 C -0.198 4.198 25 C -0.191 4.191 26 C -0.157 4.157 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.248 0.752 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.081 0.919 52 H 0.107 0.893 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.802 -28.304 -0.598 29.647 hybrid contribution 0.099 1.502 -0.002 1.505 sum -8.703 -26.802 -0.600 28.186 Atomic orbital electron populations 1.22008 0.77713 1.04545 1.03192 1.47015 1.07618 1.03636 1.77354 1.16177 0.84911 0.81517 0.77757 1.90862 1.14101 1.87044 1.60513 1.45163 1.10327 1.03699 1.78907 1.21054 0.93972 0.81651 0.99739 1.20700 0.95342 0.93084 0.97209 1.21676 0.98994 1.01402 0.95626 1.21677 0.98989 1.01408 0.95629 1.18982 0.94663 0.91868 0.94351 1.21609 0.93807 0.90899 1.48521 0.90758 1.25978 0.96688 1.02218 0.95539 1.70137 1.14736 1.20505 1.52694 0.85465 0.79758 0.79012 0.77209 1.17880 1.21122 1.21127 1.21996 0.96134 0.81174 0.96470 0.91037 1.22654 1.02341 0.95100 0.96529 1.22219 1.02380 0.95595 0.94446 1.21094 0.96178 0.94165 0.95158 1.21938 0.95777 1.01309 1.00814 1.21877 0.97645 0.98477 1.01118 1.22823 1.02254 0.93900 0.96761 0.91181 0.88270 0.90736 0.75184 0.94134 0.94143 0.91378 0.92317 0.94520 0.94537 0.92328 0.91364 0.99625 0.99625 0.93212 0.92764 0.89726 0.91778 0.89734 0.91590 0.92610 0.93923 0.91751 0.92658 0.91895 0.89328 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 9.08 127.77 1.16 2.07 16 2 N -0.62 -14.19 2.89 -833.32 -2.41 -16.60 16 3 C 0.70 22.60 8.28 179.05 1.48 24.08 16 4 O -0.64 -27.36 15.71 -3.97 -0.06 -27.42 16 5 N -0.72 -21.61 4.82 -478.53 -2.31 -23.92 16 6 C 0.16 6.08 4.56 86.38 0.39 6.47 16 7 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 8 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 9 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 10 C 0.04 2.01 4.04 29.85 0.12 2.13 16 11 C -0.51 -27.39 7.65 25.60 0.20 -27.20 16 12 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 13 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 14 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 15 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 C 0.15 3.10 3.31 46.29 0.15 3.25 16 20 H 0.07 2.05 6.99 -2.39 -0.02 2.03 16 21 C -0.13 -2.04 6.40 31.67 0.20 -1.84 16 22 C -0.11 -1.34 6.11 31.32 0.19 -1.15 16 23 C -0.07 -0.81 0.94 -51.46 -0.05 -0.86 16 24 C -0.14 -1.91 8.14 71.98 0.59 -1.33 16 25 C -0.13 -1.20 8.15 71.98 0.59 -0.61 16 26 C -0.12 -1.87 5.44 31.68 0.17 -1.70 16 27 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 28 H 0.10 0.88 6.05 -2.39 -0.01 0.87 16 29 H 0.07 0.92 6.36 -2.38 -0.02 0.90 16 30 H 0.41 9.47 3.89 -92.71 -0.36 9.11 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 33 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 34 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 38 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 39 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 41 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.08 1.10 7.22 -2.39 -0.02 1.08 16 44 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 45 H 0.08 0.78 7.67 -2.39 -0.02 0.76 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 51 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.09 1.10 5.77 -2.39 -0.01 1.09 16 53 H 0.06 1.05 7.84 -2.38 -0.02 1.03 16 Total: -1.00 -72.06 396.13 4.83 -67.23 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.50 Total: 18.35 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 6.79 Total: -6.03 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -4.43 Total: -97.82 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.06 4.83 -67.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358731122.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.657 kcal (2) G-P(sol) polarization free energy of solvation -72.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds