Wall clock time and date at job start Fri Apr 10 2020 22:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46812 * 60.00450 * 4 3 2 6 6 N 1.46500 * 109.46989 * 60.00100 * 5 4 3 7 7 C 1.46494 * 120.00179 * 0.76815 * 6 5 4 8 8 C 1.34778 * 119.99749 * 180.77390 * 6 5 4 9 9 O 1.21585 * 120.00204 * 359.72409 * 8 6 5 10 10 N 1.34771 * 120.00031 * 179.97438 * 8 6 5 11 11 C 1.46505 * 120.00053 * 180.02562 * 10 8 6 12 12 C 1.53006 * 109.46780 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47545 * 299.99416 * 12 11 10 14 14 C 1.53000 * 109.47083 * 59.99949 * 12 11 10 15 15 C 1.53006 * 109.46642 * 179.97438 * 12 11 10 16 16 C 1.50693 * 109.46833 * 180.02562 * 15 12 11 17 17 H 1.08004 * 120.00312 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99876 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00181 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46679 * 60.00132 * 20 18 16 22 22 H 1.48496 * 109.47428 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47144 * 300.00541 * 20 18 16 24 24 C 1.53002 * 109.47272 * 299.99776 * 5 4 3 25 25 C 1.52995 * 109.46715 * 59.99963 * 24 5 4 26 26 H 1.08994 * 109.47104 * 59.99189 * 1 2 3 27 27 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46602 * 299.99544 * 1 2 3 29 29 H 1.08994 * 109.47552 * 120.00519 * 2 1 3 30 30 H 1.09004 * 109.47015 * 60.00709 * 3 2 1 31 31 H 1.08994 * 109.47799 * 300.00386 * 3 2 1 32 32 H 1.08994 * 109.47552 * 300.00519 * 4 3 2 33 33 H 1.08998 * 109.47155 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.46657 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47828 * 264.06965 * 7 6 5 36 36 H 1.09000 * 109.47247 * 24.07327 * 7 6 5 37 37 H 1.09004 * 109.46748 * 144.07184 * 7 6 5 38 38 H 0.97007 * 120.00147 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.46989 * 299.99372 * 11 10 8 40 40 H 1.08996 * 109.47472 * 59.99782 * 11 10 8 41 41 H 1.09006 * 109.46503 * 60.00008 * 13 12 11 42 42 H 1.08995 * 109.47685 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47115 * 300.01006 * 13 12 11 44 44 H 1.08998 * 109.47414 * 59.99857 * 14 12 11 45 45 H 1.09000 * 109.46648 * 179.97438 * 14 12 11 46 46 H 1.08997 * 109.47324 * 299.99483 * 14 12 11 47 47 H 1.08998 * 109.47401 * 299.99864 * 15 12 11 48 48 H 1.09001 * 109.47186 * 59.99874 * 15 12 11 49 49 H 0.96993 * 120.00558 * 179.97438 * 19 18 16 50 50 H 1.08995 * 109.47010 * 180.02562 * 24 5 4 51 51 H 1.09000 * 109.46875 * 300.00304 * 24 5 4 52 52 H 1.09006 * 109.47145 * 180.02562 * 25 24 5 53 53 H 1.09000 * 109.47171 * 60.00521 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0794 0.7215 -1.2503 6 7 3.5906 1.4124 -2.4461 7 6 2.7624 2.6133 -2.3111 8 6 3.9027 0.9432 -3.6704 9 8 4.5941 -0.0506 -3.7825 10 7 3.4525 1.5785 -4.7704 11 6 3.7913 1.0681 -6.1013 12 6 3.1597 1.9654 -7.1675 13 6 1.6396 1.9702 -6.9951 14 6 3.6946 3.3909 -7.0166 15 6 3.5141 1.4327 -8.5574 16 6 2.8926 2.3168 -9.6076 17 1 2.3034 3.1728 -9.3133 18 6 3.0762 2.0330 -10.9444 19 7 3.7932 0.9904 -11.3029 20 14 2.3052 3.1285 -12.2463 21 1 2.8235 4.5123 -12.0989 22 1 2.6502 2.6123 -13.5952 23 1 0.8296 3.1322 -12.0796 24 6 3.5694 -0.7210 -1.2504 25 6 2.0395 -0.7209 -1.2497 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9338 0.9285 0.8890 33 1 3.9334 2.4701 -0.0002 34 1 5.1694 0.7219 -1.2510 35 1 1.7097 2.3379 -2.3751 36 1 2.9571 3.0824 -1.3467 37 1 3.0041 3.3131 -3.1111 38 1 2.9036 2.3733 -4.6811 39 1 4.8744 1.0644 -6.2241 40 1 3.4099 0.0527 -6.2090 41 1 1.3875 2.3498 -6.0049 42 1 1.1896 2.6090 -7.7549 43 1 1.2586 0.9546 -7.1025 44 1 4.7777 3.3875 -7.1395 45 1 3.2450 4.0300 -7.7765 46 1 3.4426 3.7706 -6.0265 47 1 4.5972 1.4297 -8.6801 48 1 3.1334 0.4171 -8.6652 49 1 3.9220 0.7905 -12.2432 50 1 3.9327 -1.2347 -2.1404 51 1 3.9332 -1.2350 -0.3607 52 1 1.6761 -1.7486 -1.2493 53 1 1.6757 -0.2069 -2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358734160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:30 Heat of formation + Delta-G solvation = -44.197120 kcal Electronic energy + Delta-G solvation = -27691.562082 eV Core-core repulsion = 24176.736198 eV Total energy + Delta-G solvation = -3514.825884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82455 -38.71216 -37.00461 -34.96883 -33.65223 -32.27656 -31.43316 -31.10700 -27.50973 -27.11444 -26.49229 -26.29984 -25.24609 -22.93469 -22.86394 -21.44185 -20.27018 -19.46225 -18.28973 -17.36297 -16.44485 -16.23706 -15.97375 -15.15525 -14.71035 -14.64610 -14.42882 -14.20964 -14.07630 -13.83273 -13.38402 -13.11583 -13.06363 -12.82057 -12.73258 -12.42791 -12.19632 -12.07667 -12.05480 -12.03740 -11.72258 -11.62565 -11.12757 -11.07898 -10.98832 -10.86021 -10.61267 -10.49891 -10.38940 -10.36721 -10.28584 -10.24441 -9.84716 -9.63473 -9.16777 -8.91455 -8.77834 -8.34840 -8.33748 -5.98210 -3.99580 2.79273 3.32750 3.38254 3.39331 3.45895 4.12993 4.45035 4.46855 4.53920 4.55212 4.84427 4.91239 5.02437 5.17070 5.18455 5.24299 5.36476 5.37069 5.37855 5.43461 5.47720 5.53528 5.53997 5.61019 5.67668 5.73132 5.77906 5.83244 5.89145 5.97660 6.08481 6.12284 6.19322 6.20079 6.26884 6.31398 6.35777 6.44761 6.61331 6.64743 6.67353 6.86604 7.07684 7.09688 7.09809 7.18028 7.66314 7.79199 8.00473 8.19408 8.42471 8.86453 9.05083 9.63325 11.13244 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002799 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.167569 B =10000.011687 C =10173.965982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.126 4.126 5 C 0.172 3.828 6 N -0.629 5.629 7 C 0.070 3.930 8 C 0.703 3.297 9 O -0.590 6.590 10 N -0.737 5.737 11 C 0.147 3.853 12 C -0.072 4.072 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.511 4.511 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.138 4.138 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.260 0.740 50 H 0.089 0.911 51 H 0.064 0.936 52 H 0.057 0.943 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 2.575 24.935 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.178 4.178 4 C -0.163 4.163 5 C 0.068 3.932 6 N -0.368 5.368 7 C -0.073 4.073 8 C 0.404 3.596 9 O -0.468 6.468 10 N -0.394 5.394 11 C 0.023 3.977 12 C -0.073 4.073 13 C -0.182 4.182 14 C -0.182 4.182 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.177 4.177 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.229 0.771 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.070 0.930 50 H 0.108 0.892 51 H 0.082 0.918 52 H 0.076 0.924 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.913 1.743 24.674 25.043 hybrid contribution -0.684 0.947 -0.757 1.392 sum -4.598 2.690 23.917 24.503 Atomic orbital electron populations 1.21822 0.95473 1.01603 1.01516 1.21121 0.95206 0.96010 0.98499 1.22245 0.94938 0.97277 1.03357 1.21832 0.96538 1.00677 0.97284 1.20762 0.97739 0.91820 0.82870 1.47033 1.55727 1.29388 1.04619 1.22045 0.94655 0.87493 1.03074 1.15907 0.80483 0.83033 0.80168 1.90866 1.43262 1.27179 1.85529 1.45520 1.56525 1.31864 1.05458 1.21466 0.99757 0.97576 0.78899 1.20911 0.94777 0.94666 0.96936 1.21740 0.95770 1.01668 0.99055 1.21743 1.00752 0.96686 0.99060 1.19076 0.96977 0.96294 0.87703 1.21148 1.31756 1.11464 0.90608 0.92339 1.25010 0.95445 0.95279 0.98731 1.69951 1.39681 1.27071 1.16691 0.86718 0.79702 0.80896 0.81013 1.20348 1.21408 1.20336 1.21990 0.95788 0.96412 1.03473 1.21488 0.95561 0.99895 0.97604 0.92750 0.92842 0.92961 0.91664 0.92188 0.89426 0.90519 0.91312 0.91183 0.92426 0.89779 0.92140 0.77076 0.92118 0.92125 0.95425 0.91521 0.93395 0.93381 0.91510 0.95458 0.96335 0.96343 0.92985 0.89210 0.91754 0.92443 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.72 2.72 -90.62 -0.25 -0.96 16 3 C -0.14 -0.99 4.54 -26.73 -0.12 -1.12 16 4 C -0.13 -0.92 4.91 -26.73 -0.13 -1.05 16 5 C 0.17 1.81 2.94 -67.93 -0.20 1.61 16 6 N -0.63 -7.35 2.25 -179.67 -0.40 -7.75 16 7 C 0.07 0.59 7.91 59.84 0.47 1.06 16 8 C 0.70 11.09 7.98 -86.92 -0.69 10.40 16 9 O -0.59 -11.55 14.40 5.29 0.08 -11.47 16 10 N -0.74 -11.21 4.83 -65.22 -0.31 -11.52 16 11 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 12 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 13 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 16 C -0.51 -13.60 7.65 -34.44 -0.26 -13.87 16 17 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.14 -1.55 5.23 -26.73 -0.14 -1.69 16 25 C -0.11 -1.11 5.04 -26.73 -0.13 -1.24 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.63 3.66 -51.93 -0.19 0.44 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 6.90 -51.93 -0.36 0.09 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.45 6.70 -51.93 -0.35 0.10 16 36 H 0.08 0.54 4.95 -51.93 -0.26 0.29 16 37 H 0.06 0.50 6.69 -51.93 -0.35 0.15 16 38 H 0.39 5.12 4.03 -40.82 -0.16 4.96 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.09 1.32 6.12 -51.93 -0.32 1.01 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 53 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -30.88 384.16 -9.52 -40.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -9.55 Total: 2.12 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.83 Total: -7.97 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.02 Total: -45.07 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.88 -9.52 -40.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358734160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.797 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds