Wall clock time and date at job start Fri Apr 10 2020 22:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46812 * 60.00450 * 4 3 2 6 6 N 1.46500 * 109.46989 * 60.00100 * 5 4 3 7 7 C 1.46494 * 120.00179 * 0.76815 * 6 5 4 8 8 C 1.34778 * 119.99749 * 180.77390 * 6 5 4 9 9 O 1.21585 * 120.00204 * 359.72409 * 8 6 5 10 10 N 1.34771 * 120.00031 * 179.97438 * 8 6 5 11 11 C 1.46505 * 120.00053 * 180.02562 * 10 8 6 12 12 C 1.53006 * 109.46780 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47545 * 299.99416 * 12 11 10 14 14 C 1.53000 * 109.47083 * 59.99949 * 12 11 10 15 15 C 1.53006 * 109.46642 * 179.97438 * 12 11 10 16 16 C 1.50693 * 109.46833 * 180.02562 * 15 12 11 17 17 H 1.08004 * 120.00312 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99876 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00181 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46679 * 60.00132 * 20 18 16 22 22 H 1.48496 * 109.47428 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47144 * 300.00541 * 20 18 16 24 24 C 1.53002 * 109.47272 * 299.99776 * 5 4 3 25 25 C 1.52995 * 109.46715 * 59.99963 * 24 5 4 26 26 H 1.08994 * 109.47104 * 59.99189 * 1 2 3 27 27 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46602 * 299.99544 * 1 2 3 29 29 H 1.08994 * 109.47552 * 120.00519 * 2 1 3 30 30 H 1.09004 * 109.47015 * 60.00709 * 3 2 1 31 31 H 1.08994 * 109.47799 * 300.00386 * 3 2 1 32 32 H 1.08994 * 109.47552 * 300.00519 * 4 3 2 33 33 H 1.08998 * 109.47155 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.46657 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47828 * 264.06965 * 7 6 5 36 36 H 1.09000 * 109.47247 * 24.07327 * 7 6 5 37 37 H 1.09004 * 109.46748 * 144.07184 * 7 6 5 38 38 H 0.97007 * 120.00147 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.46989 * 299.99372 * 11 10 8 40 40 H 1.08996 * 109.47472 * 59.99782 * 11 10 8 41 41 H 1.09006 * 109.46503 * 60.00008 * 13 12 11 42 42 H 1.08995 * 109.47685 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47115 * 300.01006 * 13 12 11 44 44 H 1.08998 * 109.47414 * 59.99857 * 14 12 11 45 45 H 1.09000 * 109.46648 * 179.97438 * 14 12 11 46 46 H 1.08997 * 109.47324 * 299.99483 * 14 12 11 47 47 H 1.08998 * 109.47401 * 299.99864 * 15 12 11 48 48 H 1.09001 * 109.47186 * 59.99874 * 15 12 11 49 49 H 0.96993 * 120.00558 * 179.97438 * 19 18 16 50 50 H 1.08995 * 109.47010 * 180.02562 * 24 5 4 51 51 H 1.09000 * 109.46875 * 300.00304 * 24 5 4 52 52 H 1.09006 * 109.47145 * 180.02562 * 25 24 5 53 53 H 1.09000 * 109.47171 * 60.00521 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0794 0.7215 -1.2503 6 7 3.5906 1.4124 -2.4461 7 6 2.7624 2.6133 -2.3111 8 6 3.9027 0.9432 -3.6704 9 8 4.5941 -0.0506 -3.7825 10 7 3.4525 1.5785 -4.7704 11 6 3.7913 1.0681 -6.1013 12 6 3.1597 1.9654 -7.1675 13 6 1.6396 1.9702 -6.9951 14 6 3.6946 3.3909 -7.0166 15 6 3.5141 1.4327 -8.5574 16 6 2.8926 2.3168 -9.6076 17 1 2.3034 3.1728 -9.3133 18 6 3.0762 2.0330 -10.9444 19 7 3.7932 0.9904 -11.3029 20 14 2.3052 3.1285 -12.2463 21 1 2.8235 4.5123 -12.0989 22 1 2.6502 2.6123 -13.5952 23 1 0.8296 3.1322 -12.0796 24 6 3.5694 -0.7210 -1.2504 25 6 2.0395 -0.7209 -1.2497 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9338 0.9285 0.8890 33 1 3.9334 2.4701 -0.0002 34 1 5.1694 0.7219 -1.2510 35 1 1.7097 2.3379 -2.3751 36 1 2.9571 3.0824 -1.3467 37 1 3.0041 3.3131 -3.1111 38 1 2.9036 2.3733 -4.6811 39 1 4.8744 1.0644 -6.2241 40 1 3.4099 0.0527 -6.2090 41 1 1.3875 2.3498 -6.0049 42 1 1.1896 2.6090 -7.7549 43 1 1.2586 0.9546 -7.1025 44 1 4.7777 3.3875 -7.1395 45 1 3.2450 4.0300 -7.7765 46 1 3.4426 3.7706 -6.0265 47 1 4.5972 1.4297 -8.6801 48 1 3.1334 0.4171 -8.6652 49 1 3.9220 0.7905 -12.2432 50 1 3.9327 -1.2347 -2.1404 51 1 3.9332 -1.2350 -0.3607 52 1 1.6761 -1.7486 -1.2493 53 1 1.6757 -0.2069 -2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358734160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:29 Heat of formation + Delta-G solvation = -60.915453 kcal Electronic energy + Delta-G solvation = -27692.287043 eV Core-core repulsion = 24176.736198 eV Total energy + Delta-G solvation = -3515.550845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83589 -39.83561 -38.47499 -35.94973 -35.21243 -33.98432 -32.39130 -31.88717 -29.07526 -28.24528 -27.96344 -27.64707 -26.21217 -24.77400 -23.59710 -22.41747 -21.09692 -20.64997 -19.63009 -18.62030 -18.34276 -17.28735 -17.09897 -16.51400 -16.22139 -15.64236 -15.48283 -15.34490 -15.13504 -14.97467 -14.58649 -14.38150 -14.25414 -14.04374 -13.93206 -13.65280 -13.58213 -13.17159 -12.90734 -12.82370 -12.76241 -12.71289 -12.58014 -12.36612 -12.32753 -12.31786 -12.21423 -11.98818 -11.83584 -11.53287 -11.35816 -11.12088 -11.06619 -10.99612 -10.86587 -10.61289 -10.49856 -10.10394 -9.38503 -8.12821 -6.21043 1.43152 1.45558 1.52691 1.70812 2.20991 2.45154 3.06101 3.21437 3.76208 3.84540 3.86153 3.98302 4.09580 4.17260 4.22304 4.24062 4.31632 4.48904 4.49820 4.60082 4.61550 4.68821 4.70015 4.73586 4.77377 4.81310 4.86011 4.88597 4.96538 5.02172 5.10879 5.12237 5.14124 5.15079 5.22368 5.28106 5.31596 5.40186 5.42526 5.46954 5.50114 5.50475 5.54569 5.59891 5.63822 5.77440 5.80981 5.90532 6.01948 6.31479 6.93646 7.05259 7.46723 7.64167 8.99692 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002799 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.167569 B =10000.011687 C =10173.965982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.139 4.139 4 C -0.116 4.116 5 C 0.166 3.834 6 N -0.618 5.618 7 C 0.060 3.940 8 C 0.696 3.304 9 O -0.636 6.636 10 N -0.726 5.726 11 C 0.163 3.837 12 C -0.064 4.064 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.940 5.940 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.266 1.266 24 C -0.137 4.137 25 C -0.103 4.103 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.057 0.943 46 H 0.067 0.933 47 H -0.015 1.015 48 H -0.016 1.016 49 H 0.260 0.740 50 H 0.046 0.954 51 H 0.079 0.921 52 H 0.049 0.951 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 5.625 27.608 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.176 4.176 4 C -0.153 4.153 5 C 0.063 3.937 6 N -0.356 5.356 7 C -0.081 4.081 8 C 0.397 3.603 9 O -0.517 6.517 10 N -0.383 5.383 11 C 0.038 3.962 12 C -0.064 4.064 13 C -0.176 4.176 14 C -0.176 4.176 15 C 0.004 3.996 16 C -0.552 4.552 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.581 5.581 20 Si 0.784 3.216 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.191 1.191 24 C -0.175 4.175 25 C -0.141 4.141 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.246 0.754 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.097 0.903 52 H 0.068 0.932 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.924 4.848 27.399 28.448 hybrid contribution -0.032 -0.087 -1.524 1.527 sum -5.956 4.761 25.875 26.975 Atomic orbital electron populations 1.21804 0.94921 1.01508 1.02014 1.21092 0.95605 0.96628 0.97062 1.22254 0.94402 0.96468 1.04446 1.21813 0.96826 1.01246 0.95464 1.20911 0.97039 0.91828 0.83952 1.47067 1.55157 1.30047 1.03281 1.22383 0.94681 0.86096 1.04976 1.16137 0.80215 0.82576 0.81341 1.90846 1.45273 1.29239 1.86386 1.45172 1.56800 1.32260 1.04116 1.21010 0.98223 0.96489 0.80525 1.20710 0.96362 0.95632 0.93723 1.21662 0.93799 1.01021 1.01098 1.21666 0.99815 0.94971 1.01144 1.18953 0.94543 0.94746 0.91399 1.21563 1.31040 1.11609 0.90987 0.90788 1.25967 0.96091 0.96713 1.01469 1.70119 1.41663 1.29291 1.17011 0.85585 0.79206 0.79153 0.77613 1.19055 1.21780 1.19055 1.21919 0.96616 0.96935 1.02050 1.21435 0.94631 0.99716 0.98320 0.93204 0.93355 0.91432 0.90960 0.90003 0.89366 0.89184 0.89563 0.92802 0.91182 0.87029 0.91466 0.75389 0.94206 0.94325 0.91402 0.92371 0.94655 0.94566 0.92377 0.91376 0.99687 0.99750 0.93180 0.93528 0.90292 0.93223 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 2 C -0.09 -1.14 2.72 -10.79 -0.03 -1.17 16 3 C -0.14 -1.39 4.54 30.59 0.14 -1.25 16 4 C -0.12 -1.29 4.91 30.60 0.15 -1.14 16 5 C 0.17 3.31 2.94 44.99 0.13 3.44 16 6 N -0.62 -13.56 2.25 -840.63 -1.89 -15.45 16 7 C 0.06 0.79 7.91 127.77 1.01 1.80 16 8 C 0.70 22.05 7.98 179.06 1.43 23.48 16 9 O -0.64 -26.18 14.40 -3.98 -0.06 -26.24 16 10 N -0.73 -21.56 4.83 -478.53 -2.31 -23.87 16 11 C 0.16 6.15 4.56 86.38 0.39 6.54 16 12 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 13 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 14 C -0.12 -4.02 8.05 71.98 0.58 -3.45 16 15 C 0.04 2.13 4.04 29.85 0.12 2.25 16 16 C -0.51 -27.69 7.65 25.60 0.20 -27.50 16 17 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 18 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 19 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 20 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 C -0.14 -3.10 5.23 30.59 0.16 -2.94 16 25 C -0.10 -2.06 5.04 30.59 0.15 -1.91 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.09 0.90 3.66 -2.39 -0.01 0.89 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.72 6.90 -2.39 -0.02 0.70 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 0.81 6.70 -2.39 -0.02 0.80 16 36 H 0.11 0.90 4.95 -2.39 -0.01 0.89 16 37 H 0.07 0.82 6.69 -2.38 -0.02 0.81 16 38 H 0.41 9.49 4.03 -92.70 -0.37 9.12 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.75 6.86 -2.38 -0.02 1.74 16 42 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 46 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 50 H 0.05 1.47 6.12 -2.39 -0.01 1.46 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 53 H 0.04 1.00 7.60 -2.39 -0.02 0.98 16 Total: -1.00 -71.94 384.16 4.67 -67.27 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.50 Total: 18.84 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 6.11 Total: -8.75 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -3.92 Total: -96.79 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.94 4.67 -67.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358734160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.351 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds