Wall clock time and date at job start Fri Apr 10 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47196 * 2 1 4 4 C 1.52994 * 109.47040 * 239.99459 * 2 1 3 5 5 C 1.50697 * 109.47017 * 60.00517 * 4 2 1 6 6 H 1.07994 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99699 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99459 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47460 * 60.00276 * 9 7 5 11 11 H 1.48504 * 109.46639 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47378 * 299.99850 * 9 7 5 13 13 C 1.53005 * 109.46699 * 119.99703 * 2 1 3 14 14 N 1.46504 * 109.47212 * 300.00440 * 13 2 1 15 15 C 1.34774 * 120.00175 * 180.02562 * 14 13 2 16 16 O 1.21593 * 119.99717 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00425 * 179.97438 * 15 14 13 18 18 C 1.44581 * 118.63930 * 359.97438 * 17 15 14 19 19 C 1.54863 * 109.60209 * 270.70319 * 18 17 15 20 20 C 1.47095 * 110.32536 * 288.73778 * 19 18 17 21 21 C 1.52568 * 114.32405 * 62.79556 * 20 19 18 22 22 C 1.50880 * 109.36179 * 274.98845 * 21 20 19 23 23 C 1.53002 * 109.37016 * 212.07991 * 22 21 20 24 24 C 1.52998 * 109.36854 * 331.70064 * 22 21 20 25 25 C 1.47598 * 118.64594 * 179.72697 * 17 15 14 26 26 H 1.08998 * 109.47319 * 300.00569 * 1 2 3 27 27 H 1.09000 * 109.46916 * 60.00350 * 1 2 3 28 28 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47498 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46902 * 299.99659 * 3 2 1 31 31 H 1.08998 * 109.47451 * 59.99512 * 3 2 1 32 32 H 1.09004 * 109.47021 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47736 * 299.99855 * 4 2 1 34 34 H 0.97000 * 119.99742 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47083 * 60.00110 * 13 2 1 36 36 H 1.08991 * 109.46843 * 179.97438 * 13 2 1 37 37 H 0.97000 * 119.99528 * 359.97438 * 14 13 2 38 38 H 1.09000 * 109.45090 * 30.74203 * 18 17 15 39 39 H 1.09005 * 109.44876 * 150.69273 * 18 17 15 40 40 H 1.09005 * 109.32736 * 48.99544 * 19 18 17 41 41 H 1.08997 * 109.33270 * 168.64281 * 19 18 17 42 42 H 1.08998 * 108.51471 * 184.05406 * 20 19 18 43 43 H 1.09000 * 108.50851 * 301.54916 * 20 19 18 44 44 H 1.09001 * 109.49042 * 34.96114 * 21 20 19 45 45 H 1.09000 * 109.48816 * 155.02391 * 21 20 19 46 46 H 1.08993 * 109.46764 * 60.00087 * 23 22 21 47 47 H 1.08993 * 109.46828 * 180.02562 * 23 22 21 48 48 H 1.09000 * 109.46835 * 300.00220 * 23 22 21 49 49 H 1.09002 * 109.47035 * 60.91638 * 24 22 21 50 50 H 1.09002 * 109.47316 * 180.92095 * 24 22 21 51 51 H 1.09004 * 109.46943 * 300.91732 * 24 22 21 52 52 H 1.08997 * 108.95062 * 258.57384 * 25 17 15 53 53 H 1.08998 * 108.94861 * 17.20601 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4819 -3.7319 8 7 2.6281 -1.5506 -3.8524 9 14 1.2481 0.3983 -5.2571 10 1 1.7421 1.7987 -5.2572 11 1 1.7432 -0.3018 -6.4696 12 1 -0.2369 0.3973 -5.2573 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4455 15 6 1.8773 -0.4907 3.6696 16 8 2.5764 -1.4793 3.7812 17 7 1.4285 0.1449 4.7700 18 6 0.5997 1.3178 4.6032 19 6 1.4945 2.5794 4.5253 20 6 2.0768 2.8750 5.8433 21 6 3.0029 1.7875 6.3794 22 6 2.1829 0.7338 7.0820 23 6 2.9979 0.1404 8.2330 24 6 0.9095 1.3712 7.6414 25 6 1.7986 -0.3884 6.0956 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7490 -1.2491 34 1 2.8624 -1.8821 -4.7334 35 1 1.6766 -1.7488 1.2494 36 1 3.1298 -0.7216 1.2491 37 1 0.9941 0.7583 2.3564 38 1 0.0213 1.2258 3.6839 39 1 -0.0788 1.4064 5.4517 40 1 2.2963 2.4092 3.8067 41 1 0.8934 3.4286 4.2005 42 1 2.6402 3.8053 5.7720 43 1 1.2646 3.0200 6.5557 44 1 3.5473 1.3329 5.5517 45 1 3.7104 2.2267 7.0828 46 1 3.2584 0.9295 8.9382 47 1 2.4072 -0.6214 8.7414 48 1 3.9090 -0.3098 7.8387 49 1 0.3209 1.7857 6.8230 50 1 0.3236 0.6147 8.1636 51 1 1.1768 2.1673 8.3364 52 1 0.9545 -0.9463 6.5009 53 1 2.6456 -1.0647 5.9811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358737284.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:32 Heat of formation + Delta-G solvation = -40.451590 kcal Electronic energy + Delta-G solvation = -27854.969083 eV Core-core repulsion = 24340.305618 eV Total energy + Delta-G solvation = -3514.663466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93705 -38.83845 -37.05422 -35.10955 -33.61585 -33.33034 -31.95738 -28.58031 -27.73901 -27.27195 -26.72377 -26.49106 -25.36488 -24.66566 -22.77364 -21.35160 -19.66202 -18.68193 -18.56247 -17.40668 -16.87918 -16.25166 -15.92566 -15.27870 -14.91261 -14.57277 -14.47799 -14.21649 -13.87902 -13.69477 -13.45605 -13.40333 -13.00534 -12.94508 -12.69619 -12.52740 -12.32787 -12.23180 -12.03956 -11.96897 -11.50729 -11.40765 -11.12058 -10.98751 -10.95441 -10.85776 -10.73544 -10.61036 -10.53696 -10.36286 -10.29426 -10.24247 -9.84721 -9.80788 -9.17360 -8.91323 -8.81932 -8.36079 -8.33871 -5.98118 -3.99404 2.80575 3.32813 3.38290 3.39391 3.42992 4.11341 4.39757 4.44524 4.46836 4.56568 4.63933 4.71795 4.96294 5.17016 5.18815 5.23620 5.34387 5.37250 5.41157 5.44355 5.52946 5.57301 5.58582 5.67306 5.68521 5.77523 5.79525 5.82789 5.84316 5.92585 5.99589 6.06858 6.12244 6.20271 6.25127 6.26446 6.32037 6.44803 6.61087 6.64303 6.64959 6.85196 7.04897 7.09520 7.09824 7.18170 7.66507 7.79416 8.00616 8.18735 8.42604 8.84015 9.05245 9.63442 11.13341 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.002869 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.173382 B = 9758.368926 C =10153.332326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.145 3.855 14 N -0.736 5.736 15 C 0.698 3.302 16 O -0.595 6.595 17 N -0.623 5.623 18 C 0.103 3.897 19 C -0.141 4.141 20 C -0.132 4.132 21 C -0.105 4.105 22 C -0.076 4.076 23 C -0.139 4.139 24 C -0.156 4.156 25 C 0.140 3.860 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.394 0.606 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.052 0.948 51 H 0.056 0.944 52 H 0.057 0.943 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 9.028 23.676 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.022 3.978 14 N -0.393 5.393 15 C 0.399 3.601 16 O -0.473 6.473 17 N -0.360 5.360 18 C -0.021 4.021 19 C -0.180 4.180 20 C -0.169 4.169 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.196 4.196 24 C -0.213 4.213 25 C 0.017 3.983 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.559 8.172 23.612 25.239 hybrid contribution -0.539 0.864 -1.016 1.438 sum -4.098 9.035 22.597 24.679 Atomic orbital electron populations 1.21746 0.95371 1.01124 1.00019 1.20905 0.95399 0.95849 0.95098 1.21741 1.00521 0.95931 1.00047 1.19076 0.96363 0.95218 0.89404 1.21147 1.31197 1.12078 0.90540 0.92337 1.25012 0.95329 0.95086 0.99049 1.69955 1.36867 1.23034 1.23526 0.86717 0.79129 0.79761 0.82716 1.20346 1.21409 1.20350 1.21478 0.98630 0.95658 0.82050 1.45554 1.55992 1.33218 1.04547 1.16049 0.80323 0.82953 0.80786 1.90891 1.42951 1.27743 1.85754 1.46801 1.54353 1.29667 1.05168 1.21695 0.93036 0.84925 1.02461 1.21332 1.00295 0.97901 0.98472 1.20658 1.00079 0.98534 0.97616 1.21114 0.97583 0.95573 0.99951 1.20714 0.96015 0.95736 0.95239 1.21867 0.99816 1.00794 0.97160 1.22406 0.97180 1.00619 1.01080 1.21787 1.01164 0.94796 0.80512 0.95488 0.91484 0.93362 0.93400 0.91515 0.95404 0.96334 0.96329 0.92990 0.92108 0.92105 0.76888 0.90987 0.89536 0.91448 0.90891 0.92696 0.90594 0.91543 0.92009 0.92335 0.92491 0.92279 0.90814 0.92877 0.92455 0.92463 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.21 8.05 37.15 0.30 -1.92 16 4 C 0.04 0.91 4.04 -27.89 -0.11 0.80 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.15 2.67 4.56 -4.04 -0.02 2.66 16 14 N -0.74 -11.32 4.79 -65.23 -0.31 -11.64 16 15 C 0.70 11.26 8.22 -86.93 -0.71 10.54 16 16 O -0.59 -12.03 15.62 5.28 0.08 -11.94 16 17 N -0.62 -7.47 2.23 -178.07 -0.40 -7.87 16 18 C 0.10 0.93 5.06 -4.08 -0.02 0.91 16 19 C -0.14 -1.20 5.74 -28.58 -0.16 -1.36 16 20 C -0.13 -1.03 4.99 -29.79 -0.15 -1.17 16 21 C -0.10 -0.92 4.90 -28.02 -0.14 -1.06 16 22 C -0.08 -0.62 0.75 -154.91 -0.12 -0.73 16 23 C -0.14 -1.00 8.15 37.16 0.30 -0.70 16 24 C -0.16 -1.02 6.75 37.16 0.25 -0.77 16 25 C 0.14 1.51 5.02 -2.77 -0.01 1.50 16 26 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 5.21 3.78 -40.82 -0.15 5.05 16 38 H 0.07 0.65 6.23 -51.93 -0.32 0.33 16 39 H 0.09 0.64 5.21 -51.93 -0.27 0.37 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.50 4.66 -51.93 -0.24 0.26 16 44 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 45 H 0.06 0.50 7.74 -51.93 -0.40 0.10 16 46 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.47 3.16 -51.93 -0.16 0.31 16 50 H 0.05 0.33 8.13 -51.93 -0.42 -0.09 16 51 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 52 H 0.06 0.58 7.98 -51.93 -0.41 0.16 16 53 H 0.09 1.19 6.78 -51.93 -0.35 0.84 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -31.07 382.36 -9.34 -40.41 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -9.45 Total: 1.96 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.74 Total: -7.09 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.03 Total: -45.32 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.07 -9.34 -40.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737284.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.046 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds