Wall clock time and date at job start Fri Apr 10 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47196 * 2 1 4 4 C 1.52994 * 109.47040 * 239.99459 * 2 1 3 5 5 C 1.50697 * 109.47017 * 60.00517 * 4 2 1 6 6 H 1.07994 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99699 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99459 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47460 * 60.00276 * 9 7 5 11 11 H 1.48504 * 109.46639 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47378 * 299.99850 * 9 7 5 13 13 C 1.53005 * 109.46699 * 119.99703 * 2 1 3 14 14 N 1.46504 * 109.47212 * 300.00440 * 13 2 1 15 15 C 1.34774 * 120.00175 * 180.02562 * 14 13 2 16 16 O 1.21593 * 119.99717 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00425 * 179.97438 * 15 14 13 18 18 C 1.44581 * 118.63930 * 359.97438 * 17 15 14 19 19 C 1.54863 * 109.60209 * 270.70319 * 18 17 15 20 20 C 1.47095 * 110.32536 * 288.73778 * 19 18 17 21 21 C 1.52568 * 114.32405 * 62.79556 * 20 19 18 22 22 C 1.50880 * 109.36179 * 274.98845 * 21 20 19 23 23 C 1.53002 * 109.37016 * 212.07991 * 22 21 20 24 24 C 1.52998 * 109.36854 * 331.70064 * 22 21 20 25 25 C 1.47598 * 118.64594 * 179.72697 * 17 15 14 26 26 H 1.08998 * 109.47319 * 300.00569 * 1 2 3 27 27 H 1.09000 * 109.46916 * 60.00350 * 1 2 3 28 28 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47498 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46902 * 299.99659 * 3 2 1 31 31 H 1.08998 * 109.47451 * 59.99512 * 3 2 1 32 32 H 1.09004 * 109.47021 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47736 * 299.99855 * 4 2 1 34 34 H 0.97000 * 119.99742 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47083 * 60.00110 * 13 2 1 36 36 H 1.08991 * 109.46843 * 179.97438 * 13 2 1 37 37 H 0.97000 * 119.99528 * 359.97438 * 14 13 2 38 38 H 1.09000 * 109.45090 * 30.74203 * 18 17 15 39 39 H 1.09005 * 109.44876 * 150.69273 * 18 17 15 40 40 H 1.09005 * 109.32736 * 48.99544 * 19 18 17 41 41 H 1.08997 * 109.33270 * 168.64281 * 19 18 17 42 42 H 1.08998 * 108.51471 * 184.05406 * 20 19 18 43 43 H 1.09000 * 108.50851 * 301.54916 * 20 19 18 44 44 H 1.09001 * 109.49042 * 34.96114 * 21 20 19 45 45 H 1.09000 * 109.48816 * 155.02391 * 21 20 19 46 46 H 1.08993 * 109.46764 * 60.00087 * 23 22 21 47 47 H 1.08993 * 109.46828 * 180.02562 * 23 22 21 48 48 H 1.09000 * 109.46835 * 300.00220 * 23 22 21 49 49 H 1.09002 * 109.47035 * 60.91638 * 24 22 21 50 50 H 1.09002 * 109.47316 * 180.92095 * 24 22 21 51 51 H 1.09004 * 109.46943 * 300.91732 * 24 22 21 52 52 H 1.08997 * 108.95062 * 258.57384 * 25 17 15 53 53 H 1.08998 * 108.94861 * 17.20601 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4819 -3.7319 8 7 2.6281 -1.5506 -3.8524 9 14 1.2481 0.3983 -5.2571 10 1 1.7421 1.7987 -5.2572 11 1 1.7432 -0.3018 -6.4696 12 1 -0.2369 0.3973 -5.2573 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4455 15 6 1.8773 -0.4907 3.6696 16 8 2.5764 -1.4793 3.7812 17 7 1.4285 0.1449 4.7700 18 6 0.5997 1.3178 4.6032 19 6 1.4945 2.5794 4.5253 20 6 2.0768 2.8750 5.8433 21 6 3.0029 1.7875 6.3794 22 6 2.1829 0.7338 7.0820 23 6 2.9979 0.1404 8.2330 24 6 0.9095 1.3712 7.6414 25 6 1.7986 -0.3884 6.0956 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7490 -1.2491 34 1 2.8624 -1.8821 -4.7334 35 1 1.6766 -1.7488 1.2494 36 1 3.1298 -0.7216 1.2491 37 1 0.9941 0.7583 2.3564 38 1 0.0213 1.2258 3.6839 39 1 -0.0788 1.4064 5.4517 40 1 2.2963 2.4092 3.8067 41 1 0.8934 3.4286 4.2005 42 1 2.6402 3.8053 5.7720 43 1 1.2646 3.0200 6.5557 44 1 3.5473 1.3329 5.5517 45 1 3.7104 2.2267 7.0828 46 1 3.2584 0.9295 8.9382 47 1 2.4072 -0.6214 8.7414 48 1 3.9090 -0.3098 7.8387 49 1 0.3209 1.7857 6.8230 50 1 0.3236 0.6147 8.1636 51 1 1.1768 2.1673 8.3364 52 1 0.9545 -0.9463 6.5009 53 1 2.6456 -1.0647 5.9811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358737284.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:32 Heat of formation + Delta-G solvation = -57.373688 kcal Electronic energy + Delta-G solvation = -27855.702880 eV Core-core repulsion = 24340.305618 eV Total energy + Delta-G solvation = -3515.397263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94287 -39.94077 -38.58441 -36.08047 -35.07238 -34.39412 -33.72774 -29.27035 -29.16278 -28.32921 -28.02291 -27.96724 -26.54653 -25.55273 -24.59765 -22.23433 -20.88206 -19.92865 -19.42646 -18.67505 -18.34421 -17.75772 -16.94070 -16.59731 -16.22869 -15.99902 -15.58413 -15.23799 -15.09129 -14.89714 -14.61190 -14.41818 -14.17070 -14.05029 -13.92873 -13.85595 -13.59318 -13.18454 -12.96313 -12.86380 -12.78440 -12.74544 -12.57300 -12.33052 -12.23042 -12.21319 -12.08930 -11.97639 -11.63331 -11.53485 -11.44857 -11.34500 -11.14054 -10.97877 -10.86568 -10.74548 -10.49794 -10.17428 -9.43059 -8.12772 -6.20901 1.43195 1.45603 1.52702 1.67939 2.14729 2.45179 3.01128 3.21536 3.66182 3.79394 3.90024 3.97006 3.99231 4.03461 4.08952 4.21914 4.29020 4.47895 4.53122 4.58812 4.65712 4.69373 4.72382 4.76557 4.79119 4.80845 4.87367 4.90891 4.96005 5.06824 5.11172 5.12003 5.17889 5.21078 5.25368 5.26582 5.35962 5.39707 5.43522 5.46642 5.49238 5.49993 5.53901 5.59491 5.63200 5.73160 5.80698 5.90366 5.94115 6.31459 6.93602 7.01582 7.46782 7.57744 8.99750 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.002869 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.173382 B = 9758.368926 C =10153.332326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.118 4.118 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.160 3.840 14 N -0.723 5.723 15 C 0.692 3.308 16 O -0.643 6.643 17 N -0.611 5.611 18 C 0.094 3.906 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.104 4.104 22 C -0.069 4.069 23 C -0.138 4.138 24 C -0.152 4.152 25 C 0.137 3.863 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.066 0.934 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.408 0.592 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.041 0.959 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.068 0.932 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 12.264 25.453 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.176 4.176 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.035 3.965 14 N -0.381 5.381 15 C 0.393 3.607 16 O -0.526 6.526 17 N -0.346 5.346 18 C -0.029 4.029 19 C -0.176 4.176 20 C -0.168 4.168 21 C -0.142 4.142 22 C -0.070 4.070 23 C -0.195 4.195 24 C -0.209 4.209 25 C 0.014 3.986 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.003 0.997 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.086 0.914 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.149 11.472 25.429 28.567 hybrid contribution 0.301 -0.184 -1.479 1.521 sum -5.847 11.288 23.950 27.115 Atomic orbital electron populations 1.21672 0.93459 1.00952 1.01564 1.20703 0.96792 0.96281 0.92585 1.21661 0.99765 0.94611 1.01530 1.18952 0.94198 0.94191 0.92308 1.21559 1.30484 1.12150 0.90977 0.90773 1.25968 0.95647 0.95858 1.02772 1.70123 1.38742 1.25048 1.24151 0.85584 0.78996 0.78747 0.78222 1.19076 1.21788 1.19044 1.21047 0.97252 0.94971 0.83189 1.45198 1.56093 1.33348 1.03495 1.16271 0.80069 0.82697 0.81678 1.90860 1.45126 1.30093 1.86496 1.46853 1.53628 1.29914 1.04254 1.22034 0.93079 0.83719 1.04045 1.21326 0.99708 0.98287 0.98314 1.20676 1.00474 0.97992 0.97705 1.21110 0.97967 0.96087 0.99041 1.20675 0.97153 0.94607 0.94570 1.21869 0.99168 1.01414 0.97086 1.22368 0.95913 1.01111 1.01467 1.21927 1.00397 0.95749 0.80508 0.91456 0.92283 0.94478 0.94679 0.92297 0.91488 0.99740 0.99635 0.93184 0.94083 0.94297 0.75235 0.90390 0.86812 0.94000 0.88397 0.92291 0.88428 0.95087 0.91166 0.90806 0.91772 0.93834 0.90298 0.92195 0.91006 0.91357 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.51 -27.66 7.65 25.60 0.20 -27.46 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 8 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 9 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.16 6.12 4.56 86.38 0.39 6.52 16 14 N -0.72 -21.91 4.79 -478.54 -2.29 -24.21 16 15 C 0.69 22.57 8.22 179.06 1.47 24.05 16 16 O -0.64 -27.36 15.62 -4.01 -0.06 -27.43 16 17 N -0.61 -14.05 2.23 -835.55 -1.86 -15.91 16 18 C 0.09 1.40 5.06 87.37 0.44 1.85 16 19 C -0.14 -1.91 5.74 29.39 0.17 -1.74 16 20 C -0.13 -1.64 4.99 28.61 0.14 -1.50 16 21 C -0.10 -1.69 4.90 29.76 0.15 -1.55 16 22 C -0.07 -1.00 0.75 -52.44 -0.04 -1.04 16 23 C -0.14 -1.80 8.15 71.98 0.59 -1.21 16 24 C -0.15 -1.40 6.75 71.98 0.49 -0.91 16 25 C 0.14 2.88 5.02 86.60 0.43 3.31 16 26 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 27 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 31 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 9.80 3.78 -92.71 -0.35 9.45 16 38 H 0.08 1.10 6.23 -2.39 -0.01 1.09 16 39 H 0.11 1.15 5.21 -2.38 -0.01 1.14 16 40 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.84 4.66 -2.39 -0.01 0.82 16 44 H 0.03 0.72 7.49 -2.39 -0.02 0.70 16 45 H 0.07 1.01 7.74 -2.39 -0.02 0.99 16 46 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 0.64 3.16 -2.39 -0.01 0.63 16 50 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 51 H 0.07 0.51 7.90 -2.38 -0.02 0.49 16 52 H 0.07 1.28 7.98 -2.39 -0.02 1.27 16 53 H 0.06 1.63 6.78 -2.39 -0.02 1.62 16 Total: -1.00 -71.99 382.36 4.76 -67.22 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.53 Total: 18.80 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 6.14 Total: -6.71 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -3.87 Total: -97.55 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.99 4.76 -67.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737284.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -71.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds