Wall clock time and date at job start Fri Apr 10 2020 22:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99856 * 2 1 4 4 C 1.46899 * 111.00308 * 123.95176 * 2 1 3 5 5 C 1.53003 * 109.46897 * 66.04795 * 4 2 1 6 6 C 1.53002 * 109.47217 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47306 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00191 * 270.00631 * 7 6 5 9 9 C 1.50707 * 109.46756 * 274.23647 * 8 7 6 10 10 H 1.08003 * 119.99711 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99844 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00110 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99931 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46933 * 89.99928 * 13 11 9 15 15 H 1.48498 * 109.47232 * 210.00142 * 13 11 9 16 16 H 1.48498 * 109.47040 * 329.99919 * 13 11 9 17 17 C 1.34777 * 119.99999 * 89.99731 * 7 6 5 18 18 O 1.21287 * 119.99770 * 4.65719 * 17 7 6 19 19 C 1.50699 * 120.00328 * 184.64957 * 17 7 6 20 20 H 1.09000 * 110.43171 * 327.50325 * 19 17 7 21 21 C 1.54889 * 110.59834 * 90.11631 * 19 17 7 22 22 C 1.54890 * 102.74525 * 156.67523 * 21 19 17 23 23 C 1.54261 * 104.19981 * 322.06462 * 22 21 19 24 24 C 1.53005 * 110.03017 * 264.32281 * 23 22 21 25 25 C 1.53000 * 110.07408 * 142.91759 * 23 22 21 26 26 C 1.53871 * 106.59875 * 23.60808 * 23 22 21 27 27 H 1.08994 * 109.47011 * 296.04313 * 1 2 3 28 28 H 1.08994 * 109.46822 * 56.04635 * 1 2 3 29 29 H 1.09000 * 109.46642 * 176.04503 * 1 2 3 30 30 H 1.09006 * 109.47434 * 183.95624 * 3 2 1 31 31 H 1.09001 * 109.47119 * 303.95908 * 3 2 1 32 32 H 1.09000 * 109.47025 * 63.95828 * 3 2 1 33 33 H 1.08994 * 109.47600 * 306.05233 * 4 2 1 34 34 H 1.08999 * 109.47245 * 186.04709 * 4 2 1 35 35 H 1.09004 * 109.47158 * 59.99808 * 5 4 2 36 36 H 1.08999 * 109.47103 * 300.00001 * 5 4 2 37 37 H 1.08998 * 109.46644 * 59.99773 * 6 5 4 38 38 H 1.08999 * 109.47272 * 300.00127 * 6 5 4 39 39 H 1.09005 * 109.47054 * 34.23206 * 8 7 6 40 40 H 1.08994 * 109.47111 * 154.23450 * 8 7 6 41 41 H 0.97000 * 119.99851 * 179.97438 * 12 11 9 42 42 H 1.08993 * 110.76049 * 274.99195 * 21 19 17 43 43 H 1.09004 * 110.74967 * 38.37001 * 21 19 17 44 44 H 1.09000 * 110.48381 * 203.37697 * 22 21 19 45 45 H 1.09004 * 110.59248 * 80.80002 * 22 21 19 46 46 H 1.08993 * 109.47015 * 177.16569 * 24 23 22 47 47 H 1.08993 * 109.46883 * 297.16659 * 24 23 22 48 48 H 1.09002 * 109.46870 * 57.16645 * 24 23 22 49 49 H 1.09006 * 109.46671 * 302.80246 * 25 23 22 50 50 H 1.08999 * 109.47129 * 62.80259 * 25 23 22 51 51 H 1.09004 * 109.46810 * 182.80833 * 25 23 22 52 52 H 1.09006 * 110.02970 * 240.71905 * 26 23 22 53 53 H 1.08998 * 110.07442 * 119.30715 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 6 2.1805 -3.0405 2.1548 7 7 1.8315 -4.4543 1.9950 8 6 0.5750 -4.9657 2.5480 9 6 0.7795 -5.3455 3.9921 10 1 1.7487 -5.2189 4.4516 11 6 -0.2706 -5.8544 4.7264 12 7 -1.4508 -6.0080 4.1669 13 14 -0.0169 -6.3258 6.5161 14 1 -0.3041 -5.1542 7.3820 15 1 -0.9337 -7.4392 6.8694 16 1 1.3890 -6.7589 6.7194 17 6 2.6663 -5.2845 1.3390 18 8 3.7439 -4.8818 0.9549 19 6 2.2609 -6.7132 1.0829 20 1 1.6347 -7.0824 1.8951 21 6 1.5196 -6.8349 -0.2716 22 6 1.7282 -8.3241 -0.6427 23 6 3.1687 -8.6303 -0.1835 24 6 4.1367 -8.4790 -1.3587 25 6 3.2491 -10.0498 0.3817 26 6 3.5074 -7.6061 0.9137 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3632 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6610 1.1756 35 1 2.0659 -2.6213 0.0451 36 1 0.5473 -2.3475 0.9323 37 1 1.7465 -2.6618 3.0802 38 1 3.2648 -2.9355 2.1924 39 1 -0.1923 -4.1944 2.4804 40 1 0.2595 -5.8426 1.9829 41 1 -2.1895 -6.3664 4.6834 42 1 0.4595 -6.6111 -0.1532 43 1 1.9721 -6.1834 -1.0193 44 1 1.6325 -8.4659 -1.7192 45 1 1.0160 -8.9551 -0.1109 46 1 5.1566 -8.6479 -1.0134 47 1 3.8887 -9.2082 -2.1299 48 1 4.0543 -7.4729 -1.7700 49 1 2.5388 -10.1551 1.2018 50 1 3.0077 -10.7674 -0.4025 51 1 4.2582 -10.2382 0.7485 52 1 4.3614 -7.0011 0.6089 53 1 3.7287 -8.1196 1.8493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359039952.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:36 Heat of formation + Delta-G solvation = -63.100382 kcal Electronic energy + Delta-G solvation = -27404.665148 eV Core-core repulsion = 23889.019557 eV Total energy + Delta-G solvation = -3515.645591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.76792 -38.02059 -37.37097 -35.09266 -32.97086 -32.17211 -31.15369 -28.57374 -27.60153 -27.34429 -27.12588 -26.09023 -24.34943 -22.97889 -22.56072 -20.87571 -20.45627 -18.46835 -17.91646 -16.72715 -16.45193 -15.69776 -15.46631 -15.09186 -14.79025 -14.61046 -14.45973 -14.05226 -13.93149 -13.63820 -13.49459 -12.98202 -12.84372 -12.65243 -12.39914 -12.25787 -12.10526 -11.85063 -11.76111 -11.65230 -11.56347 -11.31463 -11.21790 -11.12395 -11.11759 -10.90861 -10.78548 -10.59875 -10.39104 -10.27930 -10.25807 -10.16520 -10.10345 -9.88978 -9.68638 -8.88940 -8.54331 -8.32984 -7.66220 -6.18473 -4.25692 3.21791 3.29176 3.32449 3.45386 3.85821 4.14549 4.33766 4.84881 4.88932 5.01909 5.10633 5.14672 5.16917 5.28847 5.38841 5.49524 5.51741 5.57470 5.62198 5.66706 5.67986 5.74074 5.76815 5.79159 5.81874 5.89506 5.93014 5.97484 5.99870 6.03145 6.04894 6.17842 6.18932 6.21074 6.25997 6.35272 6.40106 6.47610 6.55049 6.64308 6.66565 6.70879 6.80067 6.89175 7.05544 7.08598 7.21669 7.59955 7.77080 8.06685 8.41446 8.80761 9.10207 9.42593 10.87986 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.007765 B = 0.005191 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.927290 B = 5392.433054 C = 8128.552313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.127 4.127 6 C 0.121 3.879 7 N -0.594 5.594 8 C 0.237 3.763 9 C -0.537 4.537 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.525 3.475 18 O -0.575 6.575 19 C -0.112 4.112 20 H 0.110 0.890 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.069 4.069 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.103 4.103 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.265 0.735 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.051 0.949 52 H 0.081 0.919 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 2.572 -8.893 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.166 4.166 6 C -0.003 4.003 7 N -0.323 5.323 8 C 0.117 3.883 9 C -0.576 4.576 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.313 3.687 18 O -0.456 6.456 19 C -0.134 4.134 20 H 0.128 0.872 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.069 4.069 24 C -0.192 4.192 25 C -0.196 4.196 26 C -0.141 4.141 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.070 0.930 52 H 0.099 0.901 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.907 2.495 -9.461 10.946 hybrid contribution -0.468 0.197 1.967 2.031 sum 4.440 2.692 -7.494 9.117 Atomic orbital electron populations 1.22438 0.87413 1.02775 1.00079 1.61982 1.08102 1.13375 1.43770 1.22366 1.00711 0.89096 1.00161 1.22079 1.00014 0.93973 0.90868 1.21935 1.01502 0.93213 0.99969 1.21167 1.00377 0.81479 0.97292 1.48168 1.22870 1.07863 1.53444 1.19447 0.79807 0.95351 0.93694 1.21518 0.96878 1.43150 0.96037 0.92170 1.24923 0.94932 0.95304 0.98565 1.69922 1.01169 1.45021 1.36849 0.86543 0.78248 0.78257 0.84743 1.20570 1.21038 1.19762 1.20393 0.83608 0.87731 0.76924 1.90552 1.23097 1.77965 1.53994 1.22118 0.98578 0.92720 0.99944 0.87189 1.22353 1.00232 0.96455 0.95306 1.22459 0.95797 0.96284 1.00374 1.21156 0.95294 0.95095 0.95387 1.21880 0.98629 1.01506 0.97202 1.21919 1.01553 0.95521 1.00561 1.22229 0.97978 0.95991 0.97914 0.95662 0.91786 0.90739 0.91468 0.91646 0.95858 0.94698 0.90805 0.91258 0.91752 0.90711 0.91078 0.95017 0.93884 0.92563 0.90947 0.91639 0.91881 0.91270 0.92963 0.93237 0.92468 0.92361 0.93118 0.92967 0.90068 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.07 0.56 0.82 16 2 N -0.55 -7.26 5.02 -251.26 -1.26 -8.53 16 3 C 0.03 0.27 9.57 60.07 0.57 0.84 16 4 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 5 C -0.13 -2.09 5.46 -26.73 -0.15 -2.23 16 6 C 0.12 2.27 5.46 -4.04 -0.02 2.24 16 7 N -0.59 -12.54 2.46 -175.06 -0.43 -12.97 16 8 C 0.24 5.56 4.83 -5.19 -0.03 5.53 16 9 C -0.54 -13.91 9.35 -34.44 -0.32 -14.24 16 10 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 13 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 C 0.52 11.03 6.83 -10.99 -0.08 10.95 16 18 O -0.57 -13.05 15.17 5.55 0.08 -12.97 16 19 C -0.11 -2.08 2.29 -90.12 -0.21 -2.29 16 20 H 0.11 2.26 6.51 -51.93 -0.34 1.92 16 21 C -0.11 -1.70 6.22 -24.74 -0.15 -1.85 16 22 C -0.11 -1.53 5.90 -25.07 -0.15 -1.67 16 23 C -0.07 -0.94 0.94 -153.39 -0.14 -1.09 16 24 C -0.13 -1.67 8.14 37.16 0.30 -1.37 16 25 C -0.14 -1.68 8.16 37.16 0.30 -1.38 16 26 C -0.10 -1.71 5.63 -25.62 -0.14 -1.85 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 30 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 31 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 37 H 0.07 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 39 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.04 1.03 5.69 -51.93 -0.30 0.74 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.07 1.18 7.78 -51.93 -0.40 0.78 16 43 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 44 H 0.06 0.76 7.84 -51.93 -0.41 0.36 16 45 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.08 1.46 6.33 -51.93 -0.33 1.13 16 53 H 0.06 1.03 7.67 -51.93 -0.40 0.63 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -28.31 409.51 -9.83 -38.14 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -10.35 Total: 3.34 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 0.24 Total: -5.15 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.95 Total: -45.03 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.31 -9.83 -38.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359039952.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.960 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds