Wall clock time and date at job start Fri Apr 10 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99856 * 2 1 4 4 C 1.46899 * 111.00308 * 123.95176 * 2 1 3 5 5 C 1.53003 * 109.46897 * 66.04795 * 4 2 1 6 6 C 1.53002 * 109.47217 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47306 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00191 * 270.00631 * 7 6 5 9 9 C 1.50707 * 109.46756 * 274.23647 * 8 7 6 10 10 H 1.08003 * 119.99711 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99844 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00110 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99931 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46933 * 89.99928 * 13 11 9 15 15 H 1.48498 * 109.47232 * 210.00142 * 13 11 9 16 16 H 1.48498 * 109.47040 * 329.99919 * 13 11 9 17 17 C 1.34777 * 119.99999 * 89.99731 * 7 6 5 18 18 O 1.21287 * 119.99770 * 4.65719 * 17 7 6 19 19 C 1.50699 * 120.00328 * 184.64957 * 17 7 6 20 20 H 1.09000 * 110.43171 * 327.50325 * 19 17 7 21 21 C 1.54889 * 110.59834 * 90.11631 * 19 17 7 22 22 C 1.54890 * 102.74525 * 156.67523 * 21 19 17 23 23 C 1.54261 * 104.19981 * 322.06462 * 22 21 19 24 24 C 1.53005 * 110.03017 * 264.32281 * 23 22 21 25 25 C 1.53000 * 110.07408 * 142.91759 * 23 22 21 26 26 C 1.53871 * 106.59875 * 23.60808 * 23 22 21 27 27 H 1.08994 * 109.47011 * 296.04313 * 1 2 3 28 28 H 1.08994 * 109.46822 * 56.04635 * 1 2 3 29 29 H 1.09000 * 109.46642 * 176.04503 * 1 2 3 30 30 H 1.09006 * 109.47434 * 183.95624 * 3 2 1 31 31 H 1.09001 * 109.47119 * 303.95908 * 3 2 1 32 32 H 1.09000 * 109.47025 * 63.95828 * 3 2 1 33 33 H 1.08994 * 109.47600 * 306.05233 * 4 2 1 34 34 H 1.08999 * 109.47245 * 186.04709 * 4 2 1 35 35 H 1.09004 * 109.47158 * 59.99808 * 5 4 2 36 36 H 1.08999 * 109.47103 * 300.00001 * 5 4 2 37 37 H 1.08998 * 109.46644 * 59.99773 * 6 5 4 38 38 H 1.08999 * 109.47272 * 300.00127 * 6 5 4 39 39 H 1.09005 * 109.47054 * 34.23206 * 8 7 6 40 40 H 1.08994 * 109.47111 * 154.23450 * 8 7 6 41 41 H 0.97000 * 119.99851 * 179.97438 * 12 11 9 42 42 H 1.08993 * 110.76049 * 274.99195 * 21 19 17 43 43 H 1.09004 * 110.74967 * 38.37001 * 21 19 17 44 44 H 1.09000 * 110.48381 * 203.37697 * 22 21 19 45 45 H 1.09004 * 110.59248 * 80.80002 * 22 21 19 46 46 H 1.08993 * 109.47015 * 177.16569 * 24 23 22 47 47 H 1.08993 * 109.46883 * 297.16659 * 24 23 22 48 48 H 1.09002 * 109.46870 * 57.16645 * 24 23 22 49 49 H 1.09006 * 109.46671 * 302.80246 * 25 23 22 50 50 H 1.08999 * 109.47129 * 62.80259 * 25 23 22 51 51 H 1.09004 * 109.46810 * 182.80833 * 25 23 22 52 52 H 1.09006 * 110.02970 * 240.71905 * 26 23 22 53 53 H 1.08998 * 110.07442 * 119.30715 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 6 2.1805 -3.0405 2.1548 7 7 1.8315 -4.4543 1.9950 8 6 0.5750 -4.9657 2.5480 9 6 0.7795 -5.3455 3.9921 10 1 1.7487 -5.2189 4.4516 11 6 -0.2706 -5.8544 4.7264 12 7 -1.4508 -6.0080 4.1669 13 14 -0.0169 -6.3258 6.5161 14 1 -0.3041 -5.1542 7.3820 15 1 -0.9337 -7.4392 6.8694 16 1 1.3890 -6.7589 6.7194 17 6 2.6663 -5.2845 1.3390 18 8 3.7439 -4.8818 0.9549 19 6 2.2609 -6.7132 1.0829 20 1 1.6347 -7.0824 1.8951 21 6 1.5196 -6.8349 -0.2716 22 6 1.7282 -8.3241 -0.6427 23 6 3.1687 -8.6303 -0.1835 24 6 4.1367 -8.4790 -1.3587 25 6 3.2491 -10.0498 0.3817 26 6 3.5074 -7.6061 0.9137 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3632 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6610 1.1756 35 1 2.0659 -2.6213 0.0451 36 1 0.5473 -2.3475 0.9323 37 1 1.7465 -2.6618 3.0802 38 1 3.2648 -2.9355 2.1924 39 1 -0.1923 -4.1944 2.4804 40 1 0.2595 -5.8426 1.9829 41 1 -2.1895 -6.3664 4.6834 42 1 0.4595 -6.6111 -0.1532 43 1 1.9721 -6.1834 -1.0193 44 1 1.6325 -8.4659 -1.7192 45 1 1.0160 -8.9551 -0.1109 46 1 5.1566 -8.6479 -1.0134 47 1 3.8887 -9.2082 -2.1299 48 1 4.0543 -7.4729 -1.7700 49 1 2.5388 -10.1551 1.2018 50 1 3.0077 -10.7674 -0.4025 51 1 4.2582 -10.2382 0.7485 52 1 4.3614 -7.0011 0.6089 53 1 3.7287 -8.1196 1.8493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359039952.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:34 Heat of formation + Delta-G solvation = -77.416707 kcal Electronic energy + Delta-G solvation = -27405.285950 eV Core-core repulsion = 23889.019557 eV Total energy + Delta-G solvation = -3516.266393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.31877 -39.31701 -38.54431 -36.83094 -34.79807 -33.62942 -32.52753 -29.86991 -29.23814 -28.50271 -28.09494 -27.46938 -25.60037 -24.89086 -23.81064 -22.17532 -21.76643 -19.70395 -19.50690 -18.58102 -18.22798 -17.27083 -16.61205 -16.38407 -16.28940 -15.98647 -15.84777 -15.41783 -15.26749 -14.89410 -14.63014 -14.43102 -14.14659 -14.09472 -13.83255 -13.49301 -13.34047 -13.24642 -13.15436 -12.92026 -12.74188 -12.65953 -12.62778 -12.49619 -12.42825 -12.36222 -12.31509 -12.08428 -11.98416 -11.71154 -11.57089 -11.52949 -11.37826 -11.32731 -11.24052 -10.69650 -10.47856 -9.45811 -9.34059 -8.21444 -6.36179 1.39192 1.41458 1.50822 1.76143 2.27892 2.43766 3.02710 3.08611 3.57345 3.64826 3.77777 3.89830 4.05847 4.16380 4.23108 4.34675 4.39045 4.40092 4.43864 4.47936 4.51652 4.59056 4.60245 4.65243 4.66883 4.69735 4.74158 4.78471 4.88619 4.88910 4.96336 4.98679 4.98986 5.00086 5.06161 5.10771 5.13557 5.18387 5.20196 5.24705 5.28564 5.37913 5.43956 5.48079 5.63801 5.65863 5.86674 6.02152 6.05417 6.10075 6.58023 6.81007 7.30646 7.42273 8.83914 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.007765 B = 0.005191 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.927290 B = 5392.433054 C = 8128.552313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.110 4.110 6 C 0.119 3.881 7 N -0.599 5.599 8 C 0.255 3.745 9 C -0.549 4.549 10 H 0.048 0.952 11 C 0.025 3.975 12 N -0.917 5.917 13 Si 0.954 3.046 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.273 1.273 17 C 0.519 3.481 18 O -0.594 6.594 19 C -0.114 4.114 20 H 0.087 0.913 21 C -0.101 4.101 22 C -0.105 4.105 23 C -0.066 4.066 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.100 4.100 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.016 0.984 40 H 0.036 0.964 41 H 0.268 0.732 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.057 0.943 52 H 0.065 0.935 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.623 2.156 -9.424 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.149 4.149 6 C -0.004 4.004 7 N -0.328 5.328 8 C 0.134 3.866 9 C -0.588 4.588 10 H 0.066 0.934 11 C -0.175 4.175 12 N -0.556 5.556 13 Si 0.779 3.221 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.198 1.198 17 C 0.309 3.691 18 O -0.477 6.477 19 C -0.135 4.135 20 H 0.105 0.895 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.066 4.066 24 C -0.189 4.189 25 C -0.193 4.193 26 C -0.138 4.138 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.076 0.924 52 H 0.084 0.916 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.126 2.095 -9.997 11.428 hybrid contribution -0.525 0.386 2.127 2.224 sum 4.600 2.481 -7.870 9.448 Atomic orbital electron populations 1.22445 0.86915 1.02233 1.01049 1.61964 1.08735 1.14955 1.43175 1.22430 1.01053 0.87651 1.01149 1.21950 1.00387 0.92298 0.91597 1.21726 1.00615 0.94713 0.97884 1.21275 1.00192 0.80650 0.98306 1.48202 1.22221 1.08979 1.53350 1.19081 0.80293 0.94452 0.92772 1.21666 0.96456 1.43505 0.97150 0.93361 1.25595 0.94621 0.95101 1.02212 1.70002 1.01782 1.45482 1.38291 0.85619 0.78054 0.78170 0.80244 1.19977 1.20302 1.19820 1.20857 0.83208 0.88678 0.76368 1.90530 1.23729 1.78582 1.54815 1.22127 0.99547 0.91298 1.00498 0.89482 1.22333 0.99312 0.98576 0.93718 1.22461 0.95851 0.94027 1.01895 1.21157 0.95530 0.95083 0.94865 1.21851 0.98462 1.01503 0.97076 1.21889 1.01761 0.94701 1.00900 1.22231 0.96300 0.96216 0.99076 0.95412 0.89929 0.92208 0.90985 0.90116 0.95263 0.94302 0.90309 0.92904 0.92445 0.90937 0.91434 0.96550 0.94594 0.92254 0.91635 0.91883 0.89509 0.91034 0.92611 0.90914 0.93690 0.93237 0.91019 0.92396 0.91602 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.32 127.69 1.19 1.70 16 2 N -0.56 -14.39 5.02 -948.85 -4.76 -19.15 16 3 C 0.02 0.49 9.57 127.69 1.22 1.71 16 4 C 0.07 1.84 4.96 86.30 0.43 2.27 16 5 C -0.11 -3.71 5.46 30.60 0.17 -3.54 16 6 C 0.12 4.61 5.46 86.38 0.47 5.08 16 7 N -0.60 -26.21 2.46 -826.14 -2.03 -28.24 16 8 C 0.25 12.38 4.83 85.64 0.41 12.80 16 9 C -0.55 -29.05 9.35 25.60 0.24 -28.81 16 10 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 11 C 0.03 1.34 5.46 84.65 0.46 1.80 16 12 N -0.92 -50.24 13.29 21.45 0.28 -49.95 16 13 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 C 0.52 22.56 6.83 87.66 0.60 23.16 16 18 O -0.59 -27.70 15.17 -3.05 -0.05 -27.75 16 19 C -0.11 -4.32 2.29 -10.47 -0.02 -4.35 16 20 H 0.09 3.72 6.51 -2.39 -0.02 3.71 16 21 C -0.10 -3.28 6.22 31.89 0.20 -3.08 16 22 C -0.10 -2.71 5.90 31.67 0.19 -2.52 16 23 C -0.07 -1.71 0.94 -51.46 -0.05 -1.76 16 24 C -0.13 -2.99 8.14 71.98 0.59 -2.40 16 25 C -0.14 -3.00 8.16 71.98 0.59 -2.41 16 26 C -0.10 -3.34 5.63 31.32 0.18 -3.17 16 27 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 29 H 0.06 1.56 6.47 -2.39 -0.02 1.54 16 30 H 0.07 1.33 8.12 -2.38 -0.02 1.31 16 31 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 35 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.06 2.00 6.55 -2.39 -0.02 1.98 16 37 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 38 H 0.07 2.64 7.36 -2.39 -0.02 2.63 16 39 H 0.02 0.84 8.10 -2.38 -0.02 0.82 16 40 H 0.04 1.80 5.69 -2.39 -0.01 1.78 16 41 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 43 H 0.06 2.06 8.05 -2.38 -0.02 2.04 16 44 H 0.09 1.86 7.84 -2.39 -0.02 1.84 16 45 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 49 H 0.05 1.18 8.12 -2.38 -0.02 1.16 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.07 2.40 6.33 -2.38 -0.02 2.38 16 53 H 0.06 1.98 7.67 -2.39 -0.02 1.96 16 Total: -1.00 -60.52 409.51 3.16 -57.36 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.83 Total: 27.25 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 6.86 Total: -3.54 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.51 Total: -97.35 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -60.52 3.16 -57.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359039952.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.055 kcal (2) G-P(sol) polarization free energy of solvation -60.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds