Wall clock time and date at job start Fri Apr 10 2020 22:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99739 * 2 1 4 4 C 1.46902 * 111.00141 * 123.94662 * 2 1 3 5 5 C 1.52996 * 109.47020 * 169.99944 * 4 2 1 6 6 C 1.53005 * 109.47280 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47147 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99845 * 269.99824 * 7 6 5 9 9 C 1.50704 * 109.46914 * 270.00493 * 8 7 6 10 10 H 1.07998 * 120.00414 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99532 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00114 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00161 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47459 * 89.99940 * 13 11 9 15 15 H 1.48500 * 109.47208 * 210.00031 * 13 11 9 16 16 H 1.48499 * 109.47152 * 329.99961 * 13 11 9 17 17 C 1.34778 * 120.00054 * 90.00445 * 7 6 5 18 18 O 1.21278 * 119.99667 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99844 * 179.97438 * 17 7 6 20 20 H 1.09003 * 110.53826 * 57.38718 * 19 17 7 21 21 C 1.54884 * 110.48813 * 294.77194 * 19 17 7 22 22 C 1.54884 * 102.75052 * 203.37737 * 21 19 17 23 23 C 1.54274 * 104.19349 * 37.94246 * 22 21 19 24 24 C 1.52997 * 110.03394 * 217.10315 * 23 22 21 25 25 C 1.52999 * 110.06935 * 95.69471 * 23 22 21 26 26 C 1.53875 * 106.59941 * 336.39164 * 23 22 21 27 27 H 1.08999 * 109.47549 * 296.04800 * 1 2 3 28 28 H 1.09001 * 109.47523 * 56.05252 * 1 2 3 29 29 H 1.08998 * 109.47058 * 176.04718 * 1 2 3 30 30 H 1.09006 * 109.47144 * 183.95680 * 3 2 1 31 31 H 1.09003 * 109.47039 * 303.94749 * 3 2 1 32 32 H 1.08992 * 109.47399 * 63.95255 * 3 2 1 33 33 H 1.08999 * 109.46842 * 50.00652 * 4 2 1 34 34 H 1.08996 * 109.47311 * 290.00355 * 4 2 1 35 35 H 1.09003 * 109.47200 * 60.00704 * 5 4 2 36 36 H 1.08998 * 109.47931 * 300.00380 * 5 4 2 37 37 H 1.09003 * 109.46654 * 60.00094 * 6 5 4 38 38 H 1.08998 * 109.46724 * 300.00843 * 6 5 4 39 39 H 1.08998 * 109.46824 * 30.00527 * 8 7 6 40 40 H 1.08999 * 109.46636 * 150.00467 * 8 7 6 41 41 H 0.96996 * 120.00719 * 179.97438 * 12 11 9 42 42 H 1.09001 * 110.75781 * 321.69788 * 21 19 17 43 43 H 1.09012 * 110.75254 * 85.06502 * 21 19 17 44 44 H 1.09002 * 110.49031 * 279.26699 * 22 21 19 45 45 H 1.08997 * 110.48674 * 156.61877 * 22 21 19 46 46 H 1.09002 * 109.47153 * 177.16766 * 24 23 22 47 47 H 1.09001 * 109.46832 * 57.16957 * 24 23 22 48 48 H 1.09004 * 109.47261 * 297.16938 * 24 23 22 49 49 H 1.08997 * 109.47104 * 182.11704 * 25 23 22 50 50 H 1.08997 * 109.47748 * 302.11985 * 25 23 22 51 51 H 1.09005 * 109.47116 * 62.11823 * 25 23 22 52 52 H 1.09004 * 110.03213 * 119.27940 * 26 23 22 53 53 H 1.08998 * 110.03392 * 240.66692 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.5044 -0.9552 0.9704 6 6 4.0527 -1.7534 2.1550 7 7 5.4977 -1.9342 1.9951 8 6 6.0149 -3.1049 1.2822 9 6 6.2368 -4.2305 2.2595 10 1 6.0151 -4.0880 3.3068 11 6 6.7238 -5.4420 1.8165 12 7 6.9179 -6.4241 2.6693 13 14 7.1079 -5.6883 0.0051 14 1 8.5187 -5.3066 -0.2581 15 1 6.9058 -7.1149 -0.3542 16 1 6.2047 -4.8391 -0.8123 17 6 6.3511 -1.0235 2.5039 18 8 5.9228 -0.0543 3.0937 19 6 7.8376 -1.2098 2.3399 20 1 8.0991 -1.2875 1.2846 21 6 8.3148 -2.4658 3.1105 22 6 9.8164 -2.1704 3.3491 23 6 9.8620 -0.6566 3.6434 24 6 11.1179 -0.0400 3.0245 25 6 9.8498 -0.4149 5.1542 26 6 8.6038 -0.0459 3.0018 27 1 -0.3634 0.4513 0.9232 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9232 33 1 1.5090 -1.7405 1.1757 34 1 1.7975 -0.2246 2.0628 35 1 3.9909 0.0195 0.9323 36 1 3.7024 -1.4965 0.0453 37 1 3.5661 -2.7281 2.1927 38 1 3.8546 -1.2125 3.0803 39 1 5.2949 -3.4170 0.5258 40 1 6.9593 -2.8495 0.8016 41 1 7.2601 -7.2765 2.3577 42 1 7.7847 -2.5622 4.0580 43 1 8.1892 -3.3624 2.5033 44 1 10.3975 -2.4031 2.4568 45 1 10.1854 -2.7365 4.2043 46 1 11.1157 1.0367 3.1945 47 1 11.1299 -0.2386 1.9528 48 1 12.0031 -0.4787 3.4853 49 1 9.8442 0.6572 5.3506 50 1 8.9583 -0.8683 5.5876 51 1 10.7382 -0.8616 5.6008 52 1 7.9840 0.4219 3.7668 53 1 8.8879 0.6904 2.2500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359039953.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:39 Heat of formation + Delta-G solvation = -55.110972 kcal Electronic energy + Delta-G solvation = -27670.821899 eV Core-core repulsion = 24155.522755 eV Total energy + Delta-G solvation = -3515.299144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.83383 -38.00784 -37.39653 -35.27412 -33.09119 -32.07981 -31.13485 -28.42281 -28.00209 -27.63361 -27.07977 -26.17200 -24.30956 -22.69766 -22.32940 -20.91914 -20.42262 -18.39319 -17.93627 -16.98916 -16.53930 -15.85166 -15.49040 -15.05580 -14.98470 -14.61001 -14.31166 -14.18097 -13.75040 -13.56072 -13.44243 -13.07050 -12.79028 -12.63543 -12.52066 -12.42737 -12.18430 -11.92032 -11.81254 -11.72370 -11.49496 -11.39254 -11.31047 -11.21931 -11.05814 -10.76077 -10.70449 -10.46441 -10.32751 -10.26557 -10.16637 -10.13806 -10.01912 -9.81912 -9.54661 -8.93080 -8.66685 -8.39167 -7.72886 -6.21853 -4.19510 3.17078 3.25988 3.28128 3.40198 3.75775 4.07084 4.26281 4.92078 4.98433 5.04826 5.08648 5.10318 5.12169 5.24459 5.33879 5.44699 5.53986 5.60010 5.60229 5.65600 5.70627 5.75579 5.76380 5.80904 5.81731 5.85270 5.94346 5.97535 6.01261 6.05510 6.14184 6.18529 6.22062 6.31743 6.39521 6.41572 6.44685 6.47653 6.57237 6.58736 6.69389 6.71715 6.83015 6.99508 7.01617 7.02139 7.30223 7.41535 7.46141 8.16163 8.43076 8.83237 8.98892 9.36750 10.90100 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.004938 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.630621 B = 5668.383233 C = 7852.447968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.589 5.589 8 C 0.207 3.793 9 C -0.530 4.530 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.888 5.888 13 Si 0.864 3.136 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.264 1.264 17 C 0.526 3.474 18 O -0.573 6.573 19 C -0.107 4.107 20 H 0.088 0.912 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.072 4.072 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.101 4.101 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.057 0.943 51 H 0.049 0.951 52 H 0.080 0.920 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 11.271 -3.049 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.318 5.318 8 C 0.085 3.915 9 C -0.568 4.568 10 H 0.099 0.901 11 C -0.127 4.127 12 N -0.526 5.526 13 Si 0.690 3.310 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.188 1.188 17 C 0.314 3.686 18 O -0.454 6.454 19 C -0.128 4.128 20 H 0.106 0.894 21 C -0.146 4.146 22 C -0.154 4.154 23 C -0.072 4.072 24 C -0.193 4.193 25 C -0.192 4.192 26 C -0.139 4.139 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.068 0.932 52 H 0.099 0.901 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.561 11.324 -3.168 11.862 hybrid contribution -0.063 -0.015 -0.275 0.283 sum -1.624 11.309 -3.444 11.932 Atomic orbital electron populations 1.22367 0.87624 1.02189 1.00167 1.61982 1.07537 1.13971 1.43737 1.22425 1.01432 0.88715 1.00040 1.22081 0.95964 0.98062 0.90877 1.21955 0.93811 1.01136 0.99897 1.21207 0.81296 1.00198 0.97536 1.47851 1.05204 1.23668 1.55063 1.19867 0.94771 0.83812 0.93018 1.21328 1.44098 0.95156 0.96232 0.90147 1.24825 0.95070 0.95682 0.97089 1.69879 1.44655 1.03724 1.34317 0.87035 0.79573 0.78108 0.86258 1.19772 1.20963 1.18838 1.20458 0.88886 0.81614 0.77596 1.90559 1.79475 1.31274 1.44068 1.22018 0.91432 0.98081 1.01273 0.89399 1.22833 0.93005 0.97731 1.01026 1.22545 0.98117 0.93841 1.00928 1.21210 0.94722 0.96041 0.95250 1.21905 0.97075 0.99959 1.00409 1.21870 1.01539 1.00805 0.94985 1.22201 0.95161 0.96484 1.00025 0.95852 0.91630 0.91339 0.90910 0.91776 0.95731 0.90568 0.94737 0.91867 0.91115 0.90290 0.91044 0.94941 0.95185 0.92391 0.91745 0.86591 0.92000 0.91896 0.93193 0.92778 0.93073 0.93214 0.92424 0.93165 0.90112 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 60.06 0.57 0.83 16 2 N -0.55 -6.98 5.02 -251.27 -1.26 -8.24 16 3 C 0.02 0.26 9.32 60.07 0.56 0.82 16 4 C 0.06 0.78 4.96 -3.83 -0.02 0.77 16 5 C -0.13 -2.01 5.46 -26.73 -0.15 -2.16 16 6 C 0.12 2.18 5.41 -4.04 -0.02 2.15 16 7 N -0.59 -11.83 2.46 -175.05 -0.43 -12.26 16 8 C 0.21 4.42 3.76 -5.19 -0.02 4.40 16 9 C -0.53 -13.11 6.66 -34.44 -0.23 -13.34 16 10 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 11 C 0.08 1.98 5.27 -17.82 -0.09 1.88 16 12 N -0.89 -24.75 13.96 55.43 0.77 -23.97 16 13 Si 0.86 19.24 27.47 -169.99 -4.67 14.57 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 17 C 0.53 10.71 7.04 -10.98 -0.08 10.63 16 18 O -0.57 -12.67 15.00 5.56 0.08 -12.58 16 19 C -0.11 -1.94 2.31 -90.11 -0.21 -2.15 16 20 H 0.09 1.52 7.30 -51.93 -0.38 1.14 16 21 C -0.11 -2.07 4.74 -24.74 -0.12 -2.19 16 22 C -0.12 -1.87 5.90 -25.07 -0.15 -2.02 16 23 C -0.07 -1.04 0.94 -153.39 -0.14 -1.18 16 24 C -0.14 -1.66 8.16 37.16 0.30 -1.36 16 25 C -0.13 -1.84 8.15 37.16 0.30 -1.54 16 26 C -0.10 -1.63 5.49 -25.61 -0.14 -1.77 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 39 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 40 H 0.03 0.63 5.44 -51.93 -0.28 0.34 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 43 H 0.12 2.52 4.89 -51.92 -0.25 2.27 16 44 H 0.06 0.94 7.84 -51.93 -0.41 0.54 16 45 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.65 8.12 -51.93 -0.42 0.22 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.08 1.44 6.38 -51.93 -0.33 1.11 16 53 H 0.06 0.86 7.67 -51.93 -0.40 0.46 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -27.83 399.03 -9.34 -37.18 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -10.23 Total: 5.52 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.38 Total: -6.22 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.92 Total: -44.47 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.83 -9.34 -37.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359039953.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.936 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds