Wall clock time and date at job start Fri Apr 10 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99739 * 2 1 4 4 C 1.46902 * 111.00141 * 123.94662 * 2 1 3 5 5 C 1.52996 * 109.47020 * 169.99944 * 4 2 1 6 6 C 1.53005 * 109.47280 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47147 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99845 * 269.99824 * 7 6 5 9 9 C 1.50704 * 109.46914 * 270.00493 * 8 7 6 10 10 H 1.07998 * 120.00414 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99532 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00114 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00161 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47459 * 89.99940 * 13 11 9 15 15 H 1.48500 * 109.47208 * 210.00031 * 13 11 9 16 16 H 1.48499 * 109.47152 * 329.99961 * 13 11 9 17 17 C 1.34778 * 120.00054 * 90.00445 * 7 6 5 18 18 O 1.21278 * 119.99667 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99844 * 179.97438 * 17 7 6 20 20 H 1.09003 * 110.53826 * 57.38718 * 19 17 7 21 21 C 1.54884 * 110.48813 * 294.77194 * 19 17 7 22 22 C 1.54884 * 102.75052 * 203.37737 * 21 19 17 23 23 C 1.54274 * 104.19349 * 37.94246 * 22 21 19 24 24 C 1.52997 * 110.03394 * 217.10315 * 23 22 21 25 25 C 1.52999 * 110.06935 * 95.69471 * 23 22 21 26 26 C 1.53875 * 106.59941 * 336.39164 * 23 22 21 27 27 H 1.08999 * 109.47549 * 296.04800 * 1 2 3 28 28 H 1.09001 * 109.47523 * 56.05252 * 1 2 3 29 29 H 1.08998 * 109.47058 * 176.04718 * 1 2 3 30 30 H 1.09006 * 109.47144 * 183.95680 * 3 2 1 31 31 H 1.09003 * 109.47039 * 303.94749 * 3 2 1 32 32 H 1.08992 * 109.47399 * 63.95255 * 3 2 1 33 33 H 1.08999 * 109.46842 * 50.00652 * 4 2 1 34 34 H 1.08996 * 109.47311 * 290.00355 * 4 2 1 35 35 H 1.09003 * 109.47200 * 60.00704 * 5 4 2 36 36 H 1.08998 * 109.47931 * 300.00380 * 5 4 2 37 37 H 1.09003 * 109.46654 * 60.00094 * 6 5 4 38 38 H 1.08998 * 109.46724 * 300.00843 * 6 5 4 39 39 H 1.08998 * 109.46824 * 30.00527 * 8 7 6 40 40 H 1.08999 * 109.46636 * 150.00467 * 8 7 6 41 41 H 0.96996 * 120.00719 * 179.97438 * 12 11 9 42 42 H 1.09001 * 110.75781 * 321.69788 * 21 19 17 43 43 H 1.09012 * 110.75254 * 85.06502 * 21 19 17 44 44 H 1.09002 * 110.49031 * 279.26699 * 22 21 19 45 45 H 1.08997 * 110.48674 * 156.61877 * 22 21 19 46 46 H 1.09002 * 109.47153 * 177.16766 * 24 23 22 47 47 H 1.09001 * 109.46832 * 57.16957 * 24 23 22 48 48 H 1.09004 * 109.47261 * 297.16938 * 24 23 22 49 49 H 1.08997 * 109.47104 * 182.11704 * 25 23 22 50 50 H 1.08997 * 109.47748 * 302.11985 * 25 23 22 51 51 H 1.09005 * 109.47116 * 62.11823 * 25 23 22 52 52 H 1.09004 * 110.03213 * 119.27940 * 26 23 22 53 53 H 1.08998 * 110.03392 * 240.66692 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.5044 -0.9552 0.9704 6 6 4.0527 -1.7534 2.1550 7 7 5.4977 -1.9342 1.9951 8 6 6.0149 -3.1049 1.2822 9 6 6.2368 -4.2305 2.2595 10 1 6.0151 -4.0880 3.3068 11 6 6.7238 -5.4420 1.8165 12 7 6.9179 -6.4241 2.6693 13 14 7.1079 -5.6883 0.0051 14 1 8.5187 -5.3066 -0.2581 15 1 6.9058 -7.1149 -0.3542 16 1 6.2047 -4.8391 -0.8123 17 6 6.3511 -1.0235 2.5039 18 8 5.9228 -0.0543 3.0937 19 6 7.8376 -1.2098 2.3399 20 1 8.0991 -1.2875 1.2846 21 6 8.3148 -2.4658 3.1105 22 6 9.8164 -2.1704 3.3491 23 6 9.8620 -0.6566 3.6434 24 6 11.1179 -0.0400 3.0245 25 6 9.8498 -0.4149 5.1542 26 6 8.6038 -0.0459 3.0018 27 1 -0.3634 0.4513 0.9232 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9232 33 1 1.5090 -1.7405 1.1757 34 1 1.7975 -0.2246 2.0628 35 1 3.9909 0.0195 0.9323 36 1 3.7024 -1.4965 0.0453 37 1 3.5661 -2.7281 2.1927 38 1 3.8546 -1.2125 3.0803 39 1 5.2949 -3.4170 0.5258 40 1 6.9593 -2.8495 0.8016 41 1 7.2601 -7.2765 2.3577 42 1 7.7847 -2.5622 4.0580 43 1 8.1892 -3.3624 2.5033 44 1 10.3975 -2.4031 2.4568 45 1 10.1854 -2.7365 4.2043 46 1 11.1157 1.0367 3.1945 47 1 11.1299 -0.2386 1.9528 48 1 12.0031 -0.4787 3.4853 49 1 9.8442 0.6572 5.3506 50 1 8.9583 -0.8683 5.5876 51 1 10.7382 -0.8616 5.6008 52 1 7.9840 0.4219 3.7668 53 1 8.8879 0.6904 2.2500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359039953.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:38 Heat of formation + Delta-G solvation = -70.286288 kcal Electronic energy + Delta-G solvation = -27671.479950 eV Core-core repulsion = 24155.522755 eV Total energy + Delta-G solvation = -3515.957195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37957 -39.28163 -38.54173 -36.94367 -34.79448 -33.65936 -32.45631 -29.96270 -29.63502 -28.51463 -28.11254 -27.47279 -25.58130 -24.38448 -23.73367 -22.21850 -21.71510 -19.77334 -19.43553 -18.89368 -18.13732 -17.30742 -16.61832 -16.47251 -16.19315 -16.00416 -15.80335 -15.40223 -15.07017 -14.87927 -14.79073 -14.45891 -14.26521 -14.09968 -13.98193 -13.49905 -13.31286 -13.29424 -13.02150 -12.94217 -12.85238 -12.62540 -12.50999 -12.47443 -12.37179 -12.29253 -12.21369 -11.98360 -11.88650 -11.68573 -11.55319 -11.51225 -11.35890 -11.29642 -11.16036 -10.67871 -10.53256 -9.42482 -9.35411 -8.22930 -6.24607 1.41841 1.45211 1.52594 1.75628 2.26717 2.38311 3.02143 3.10551 3.57950 3.67436 3.82605 3.92257 4.07714 4.16140 4.21384 4.36697 4.38854 4.39414 4.44010 4.47205 4.51834 4.60167 4.61995 4.64485 4.68885 4.73330 4.77512 4.78250 4.78879 4.88012 4.90656 4.97249 4.97574 4.99802 5.08532 5.11096 5.12484 5.17281 5.22919 5.25403 5.40483 5.44356 5.48311 5.49519 5.64680 5.69706 5.76381 6.01676 6.08961 6.25280 6.64729 6.76518 7.28534 7.39493 8.92632 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.004938 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.630621 B = 5668.383233 C = 7852.447968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.064 3.936 5 C -0.112 4.112 6 C 0.120 3.880 7 N -0.594 5.594 8 C 0.216 3.784 9 C -0.517 4.517 10 H 0.033 0.967 11 C 0.027 3.973 12 N -0.938 5.938 13 Si 0.925 3.075 14 H -0.259 1.259 15 H -0.289 1.289 16 H -0.243 1.243 17 C 0.518 3.482 18 O -0.593 6.593 19 C -0.106 4.106 20 H 0.104 0.896 21 C -0.103 4.103 22 C -0.112 4.112 23 C -0.068 4.068 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.095 4.095 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.266 0.734 42 H 0.030 0.970 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.032 0.968 51 H 0.065 0.935 52 H 0.059 0.941 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 12.766 -5.313 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.286 5.286 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.151 4.151 6 C -0.004 4.004 7 N -0.323 5.323 8 C 0.094 3.906 9 C -0.555 4.555 10 H 0.051 0.949 11 C -0.172 4.172 12 N -0.578 5.578 13 Si 0.749 3.251 14 H -0.184 1.184 15 H -0.215 1.215 16 H -0.167 1.167 17 C 0.308 3.692 18 O -0.476 6.476 19 C -0.127 4.127 20 H 0.122 0.878 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.068 4.068 24 C -0.189 4.189 25 C -0.191 4.191 26 C -0.133 4.133 27 H 0.045 0.955 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.052 0.948 51 H 0.084 0.916 52 H 0.078 0.922 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.791 12.845 -5.439 13.972 hybrid contribution -0.386 -0.477 0.548 0.823 sum -1.178 12.368 -4.891 13.352 Atomic orbital electron populations 1.22432 0.85946 1.02916 1.01053 1.61980 1.09136 1.14401 1.43049 1.22434 1.00732 0.88481 1.00887 1.21974 0.94383 0.98738 0.91349 1.21750 0.95271 0.99836 0.98230 1.21300 0.80378 1.00385 0.98323 1.47941 1.06202 1.23219 1.54893 1.19706 0.95657 0.83011 0.92233 1.21300 1.43165 0.96420 0.94661 0.94879 1.25568 0.94902 0.95178 1.01567 1.70032 1.46573 1.04444 1.36745 0.86042 0.80352 0.77930 0.80803 1.18393 1.21533 1.16664 1.20921 0.89950 0.81264 0.77072 1.90540 1.80053 1.32139 1.44862 1.22097 0.90036 0.98405 1.02197 0.87788 1.22581 0.95378 0.97181 0.98926 1.22532 0.95514 0.95311 1.01609 1.21184 0.95240 0.94618 0.95714 1.21862 0.95792 1.00615 1.00595 1.21866 1.01116 1.01599 0.94568 1.22180 0.95313 0.95964 0.99859 0.95453 0.90114 0.90858 0.92177 0.89913 0.95729 0.89886 0.94943 0.92861 0.91428 0.90492 0.92139 0.94043 0.93701 0.92462 0.95140 0.89285 0.90576 0.91950 0.91927 0.92191 0.91846 0.91936 0.94830 0.91621 0.92180 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.57 127.69 1.22 1.67 16 2 N -0.56 -13.38 5.02 -948.87 -4.76 -18.14 16 3 C 0.02 0.50 9.32 127.69 1.19 1.69 16 4 C 0.06 1.67 4.96 86.30 0.43 2.10 16 5 C -0.11 -3.45 5.46 30.59 0.17 -3.28 16 6 C 0.12 4.36 5.41 86.38 0.47 4.83 16 7 N -0.59 -24.22 2.46 -826.13 -2.03 -26.24 16 8 C 0.22 9.16 3.76 85.63 0.32 9.48 16 9 C -0.52 -26.35 6.66 25.60 0.17 -26.18 16 10 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 11 C 0.03 1.41 5.27 84.65 0.45 1.85 16 12 N -0.94 -54.00 13.96 21.45 0.30 -53.70 16 13 Si 0.93 38.98 27.47 68.60 1.88 40.87 16 14 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 15 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.24 -9.39 6.54 99.48 0.65 -8.73 16 17 C 0.52 21.42 7.04 87.66 0.62 22.04 16 18 O -0.59 -26.78 15.00 -3.02 -0.05 -26.82 16 19 C -0.11 -3.82 2.31 -10.47 -0.02 -3.85 16 20 H 0.10 3.40 7.30 -2.39 -0.02 3.39 16 21 C -0.10 -4.03 4.74 31.88 0.15 -3.88 16 22 C -0.11 -3.49 5.90 31.67 0.19 -3.30 16 23 C -0.07 -1.83 0.94 -51.46 -0.05 -1.88 16 24 C -0.13 -2.75 8.16 71.98 0.59 -2.16 16 25 C -0.13 -3.52 8.15 71.98 0.59 -2.93 16 26 C -0.10 -2.97 5.49 31.32 0.17 -2.80 16 27 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 29 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 30 H 0.06 1.45 6.47 -2.38 -0.02 1.44 16 31 H 0.08 1.47 8.12 -2.39 -0.02 1.46 16 32 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 2.04 8.06 -2.39 -0.02 2.02 16 34 H 0.03 0.85 8.12 -2.39 -0.02 0.84 16 35 H 0.05 1.75 6.55 -2.39 -0.02 1.74 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 38 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 39 H 0.04 1.71 7.13 -2.39 -0.02 1.70 16 40 H 0.05 1.80 5.44 -2.39 -0.01 1.79 16 41 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.03 1.36 8.05 -2.39 -0.02 1.34 16 43 H 0.09 3.97 4.89 -2.38 -0.01 3.95 16 44 H 0.08 2.16 7.84 -2.39 -0.02 2.14 16 45 H 0.06 1.93 7.84 -2.39 -0.02 1.91 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 48 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 52 H 0.06 2.14 6.38 -2.39 -0.02 2.12 16 53 H 0.08 2.10 7.67 -2.39 -0.02 2.08 16 Total: -1.00 -61.95 399.03 2.77 -59.18 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.78 Total: 31.46 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 6.64 Total: -6.60 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -6.49 Total: -98.08 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.88 Total: 40.87 kcal Total: -61.95 2.77 -59.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359039953.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.110 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds