Wall clock time and date at job start Fri Apr 10 2020 22:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46970 * 2 1 4 4 C 1.42898 * 114.00140 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47400 * 180.02562 * 4 3 2 6 6 N 1.30289 * 126.34777 * 269.69608 * 5 4 3 7 7 N 1.28527 * 110.05253 * 179.81992 * 6 5 4 8 8 C 1.31224 * 109.85820 * 0.45270 * 7 6 5 9 9 N 1.38582 * 126.47152 * 179.69387 * 8 7 6 10 10 C 1.46899 * 111.00034 * 248.05578 * 9 8 7 11 11 C 1.46898 * 111.00087 * 12.01541 * 9 8 7 12 12 H 1.08999 * 109.47859 * 54.99509 * 11 9 8 13 13 C 1.53007 * 109.47002 * 294.99851 * 11 9 8 14 14 C 1.50698 * 109.47529 * 174.99913 * 11 9 8 15 15 H 1.08007 * 119.99355 * 359.97438 * 14 11 9 16 16 C 1.37870 * 120.00403 * 179.97438 * 14 11 9 17 17 N 1.31510 * 120.00283 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00196 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47042 * 60.00238 * 18 16 14 20 20 H 1.48495 * 109.47285 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47000 * 300.00611 * 18 16 14 22 22 N 1.36447 * 107.05321 * 359.72831 * 8 7 6 23 23 C 1.46503 * 127.13359 * 180.02562 * 22 8 7 24 24 C 1.53001 * 109.47191 * 84.24894 * 23 22 8 25 25 C 1.53004 * 109.46851 * 64.00717 * 24 23 22 26 26 C 1.53004 * 109.46910 * 184.00586 * 24 23 22 27 27 H 1.08999 * 109.47135 * 299.99639 * 1 2 3 28 28 H 1.09004 * 109.47200 * 59.99869 * 1 2 3 29 29 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47135 * 240.00361 * 2 1 3 31 31 H 1.08991 * 109.47414 * 120.00088 * 2 1 3 32 32 H 1.08999 * 109.47231 * 300.01029 * 4 3 2 33 33 H 1.09007 * 109.46911 * 60.00143 * 4 3 2 34 34 H 1.09002 * 109.46957 * 53.70159 * 10 9 8 35 35 H 1.09003 * 109.46608 * 173.69544 * 10 9 8 36 36 H 1.08993 * 109.47028 * 293.70238 * 10 9 8 37 37 H 1.08995 * 109.47166 * 180.02562 * 13 11 9 38 38 H 1.08999 * 109.46695 * 299.99939 * 13 11 9 39 39 H 1.09002 * 109.47271 * 59.99975 * 13 11 9 40 40 H 0.96998 * 120.00723 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46732 * 204.25002 * 23 22 8 42 42 H 1.09000 * 109.47236 * 324.24351 * 23 22 8 43 43 H 1.08995 * 109.46863 * 304.00406 * 24 23 22 44 44 H 1.08990 * 109.47166 * 293.77599 * 25 24 23 45 45 H 1.08998 * 109.47583 * 53.78342 * 25 24 23 46 46 H 1.09004 * 109.46614 * 173.77765 * 25 24 23 47 47 H 1.08996 * 109.46978 * 59.99697 * 26 24 23 48 48 H 1.08995 * 109.47156 * 180.02562 * 26 24 23 49 49 H 1.08999 * 109.47001 * 300.00059 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 7 4.0243 3.6612 -1.0479 7 7 4.3367 4.8545 -0.6868 8 6 4.3574 4.9329 0.6229 9 7 4.6578 6.0566 1.3762 10 6 5.9287 5.8857 2.0928 11 6 4.6848 7.2616 0.5365 12 1 3.7388 7.3541 0.0030 13 6 5.8305 7.1549 -0.4720 14 6 4.8920 8.4752 1.4056 15 1 4.9932 8.3625 2.4750 16 6 4.9526 9.7291 0.8357 17 7 4.8290 9.8664 -0.4663 18 14 5.2088 11.2334 1.9132 19 1 6.4972 11.1075 2.6408 20 1 5.2362 12.4515 1.0644 21 1 4.0961 11.3371 2.8913 22 7 4.0280 3.6989 1.1029 23 6 3.9197 3.2961 2.5073 24 6 2.5309 3.6597 3.0365 25 6 1.4707 2.8567 2.2801 26 6 2.4516 3.3306 4.5286 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8332 0.9767 0.8907 33 1 3.8340 0.9766 -0.8892 34 1 6.7108 5.6112 1.3850 35 1 6.1964 6.8203 2.5857 36 1 5.8218 5.0988 2.8394 37 1 5.8509 8.0492 -1.0947 38 1 6.7766 7.0625 0.0615 39 1 5.6806 6.2772 -1.1007 40 1 4.8712 10.7486 -0.8673 41 1 4.0694 2.2195 2.5890 42 1 4.6789 3.8140 3.0933 43 1 2.3535 4.7250 2.8894 44 1 1.4524 3.1714 1.2368 45 1 1.7110 1.7950 2.3352 46 1 0.4932 3.0317 2.7296 47 1 3.2070 3.9026 5.0674 48 1 1.4621 3.5892 4.9056 49 1 2.6291 2.2653 4.6757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359153685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:43 Heat of formation + Delta-G solvation = 44.810642 kcal Electronic energy + Delta-G solvation = -27829.268456 eV Core-core repulsion = 24214.761895 eV Total energy + Delta-G solvation = -3614.506561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.53131 -38.24380 -37.26063 -36.76619 -33.19047 -32.78752 -31.87813 -29.94346 -28.68252 -27.28478 -27.02631 -26.22038 -25.12880 -24.80461 -22.98475 -21.80466 -20.83184 -20.17798 -19.26132 -17.00339 -16.94663 -16.28484 -16.07514 -15.56933 -15.48098 -15.16258 -14.77382 -14.57201 -13.96368 -13.70235 -13.53099 -13.22122 -13.13532 -12.67275 -12.54326 -12.46143 -12.27417 -12.10392 -11.65695 -11.58678 -11.47906 -11.43864 -11.34928 -11.10944 -10.91729 -10.86034 -10.77263 -10.63833 -10.39127 -10.17565 -10.04766 -9.83931 -9.68452 -9.59799 -8.91730 -8.78340 -8.38153 -7.41361 -6.01044 -4.08623 2.07713 2.68139 3.25682 3.31172 3.36474 3.37800 3.80643 4.34738 4.55961 4.58936 4.62356 4.74707 4.77925 4.86411 4.98428 5.06454 5.11988 5.14423 5.21658 5.29843 5.34302 5.47260 5.55713 5.66930 5.69051 5.70298 5.80815 5.88591 5.92053 5.94138 6.04976 6.07125 6.22104 6.31895 6.39971 6.48211 6.53305 6.84539 6.95116 7.04433 7.17810 7.33573 7.52529 7.69412 7.76541 7.99997 8.33190 8.49179 8.92646 9.36399 9.55745 11.05085 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003884 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.451623 B = 7207.180047 C = 7842.847531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.375 6.375 4 C 0.164 3.836 5 C 0.144 3.856 6 N -0.268 5.268 7 N -0.313 5.313 8 C 0.391 3.609 9 N -0.454 5.454 10 C 0.035 3.965 11 C 0.230 3.770 12 H 0.049 0.951 13 C -0.178 4.178 14 C -0.515 4.515 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.474 5.474 23 C 0.118 3.882 24 C -0.114 4.114 25 C -0.138 4.138 26 C -0.140 4.140 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.019 0.981 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 -20.312 7.681 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.293 6.293 4 C 0.085 3.915 5 C -0.123 4.123 6 N -0.110 5.110 7 N -0.158 5.158 8 C 0.035 3.965 9 N -0.178 5.178 10 C -0.113 4.113 11 C 0.126 3.874 12 H 0.067 0.933 13 C -0.237 4.237 14 C -0.554 4.554 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.170 5.170 23 C -0.005 4.005 24 C -0.133 4.133 25 C -0.196 4.196 26 C -0.198 4.198 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.232 -19.522 6.460 20.994 hybrid contribution 0.703 0.269 1.459 1.642 sum -3.529 -19.253 7.919 21.115 Atomic orbital electron populations 1.21733 0.93636 1.02030 1.03404 1.22450 0.95733 0.83709 1.00004 1.88077 1.19695 1.26220 1.95308 1.20238 0.82442 0.87216 1.01605 1.23818 1.09426 0.95849 0.83207 1.73953 1.14512 0.98277 1.24295 1.74921 1.22556 1.10811 1.07494 1.23267 0.99067 0.84713 0.89420 1.59360 1.31336 0.99463 1.27660 1.22387 0.88778 1.02986 0.97122 1.19354 0.96580 0.82031 0.89479 0.93272 1.22526 0.97351 1.03088 1.00720 1.20987 1.50725 0.90153 0.93498 0.91889 1.24885 0.95116 0.98818 0.95020 1.69911 1.49285 1.23454 1.09495 0.86553 0.78638 0.81952 0.80176 1.20309 1.21275 1.20226 1.46166 1.53298 1.09752 1.07799 1.21977 0.99367 1.00725 0.78441 1.21503 0.93875 1.02486 0.95467 1.21869 0.97444 0.99190 1.01069 1.21740 1.02351 1.01112 0.94623 0.91831 0.91676 0.91247 0.93184 0.93525 0.92161 0.90113 0.94982 0.88364 0.93528 0.89332 0.96165 0.93136 0.92718 0.89777 0.88789 0.89446 0.91456 0.92912 0.93146 0.92340 0.92093 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.37 -4.53 7.04 -35.23 -0.25 -4.78 16 4 C 0.16 1.96 6.09 36.01 0.22 2.17 16 5 C 0.14 2.43 6.71 -154.02 -1.03 1.40 16 6 N -0.27 -5.67 12.18 32.99 0.40 -5.27 16 7 N -0.31 -7.33 9.01 30.31 0.27 -7.05 16 8 C 0.39 8.23 6.67 -318.87 -2.13 6.10 16 9 N -0.45 -9.90 4.78 -176.08 -0.84 -10.74 16 10 C 0.03 0.64 8.55 60.06 0.51 1.16 16 11 C 0.23 5.95 2.06 -68.86 -0.14 5.81 16 12 H 0.05 1.47 8.10 -51.93 -0.42 1.05 16 13 C -0.18 -4.57 8.28 37.16 0.31 -4.27 16 14 C -0.51 -13.84 7.79 -34.44 -0.27 -14.11 16 15 H 0.06 1.64 6.82 -52.48 -0.36 1.28 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -25.45 11.32 55.43 0.63 -24.82 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 N -0.47 -7.95 2.51 -114.08 -0.29 -8.23 16 23 C 0.12 1.47 5.41 -4.04 -0.02 1.45 16 24 C -0.11 -1.40 3.13 -90.62 -0.28 -1.69 16 25 C -0.14 -1.69 7.51 37.16 0.28 -1.41 16 26 C -0.14 -1.32 9.19 37.16 0.34 -0.97 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.55 7.18 -51.93 -0.37 0.18 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.61 6.84 -51.93 -0.36 0.25 16 35 H 0.10 1.90 6.27 -51.93 -0.33 1.58 16 36 H 0.05 0.70 5.71 -51.93 -0.30 0.41 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 38 H 0.02 0.48 6.62 -51.93 -0.34 0.14 16 39 H 0.05 1.30 5.47 -51.93 -0.28 1.01 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.08 0.82 7.10 -51.93 -0.37 0.45 16 42 H 0.09 1.14 5.66 -51.93 -0.29 0.85 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.07 1.05 5.97 -51.93 -0.31 0.74 16 45 H 0.05 0.56 7.36 -51.93 -0.38 0.17 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -31.93 374.36 -9.35 -41.28 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.21 Total: 0.71 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.68 Total: -2.74 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.18 Total: -56.12 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.25 Total: -4.78 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.93 -9.35 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359153685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.088 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds