Wall clock time and date at job start Fri Apr 10 2020 22:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46970 * 2 1 4 4 C 1.42898 * 114.00140 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47400 * 180.02562 * 4 3 2 6 6 N 1.30289 * 126.34777 * 269.69608 * 5 4 3 7 7 N 1.28527 * 110.05253 * 179.81992 * 6 5 4 8 8 C 1.31224 * 109.85820 * 0.45270 * 7 6 5 9 9 N 1.38582 * 126.47152 * 179.69387 * 8 7 6 10 10 C 1.46899 * 111.00034 * 248.05578 * 9 8 7 11 11 C 1.46898 * 111.00087 * 12.01541 * 9 8 7 12 12 H 1.08999 * 109.47859 * 54.99509 * 11 9 8 13 13 C 1.53007 * 109.47002 * 294.99851 * 11 9 8 14 14 C 1.50698 * 109.47529 * 174.99913 * 11 9 8 15 15 H 1.08007 * 119.99355 * 359.97438 * 14 11 9 16 16 C 1.37870 * 120.00403 * 179.97438 * 14 11 9 17 17 N 1.31510 * 120.00283 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00196 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47042 * 60.00238 * 18 16 14 20 20 H 1.48495 * 109.47285 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47000 * 300.00611 * 18 16 14 22 22 N 1.36447 * 107.05321 * 359.72831 * 8 7 6 23 23 C 1.46503 * 127.13359 * 180.02562 * 22 8 7 24 24 C 1.53001 * 109.47191 * 84.24894 * 23 22 8 25 25 C 1.53004 * 109.46851 * 64.00717 * 24 23 22 26 26 C 1.53004 * 109.46910 * 184.00586 * 24 23 22 27 27 H 1.08999 * 109.47135 * 299.99639 * 1 2 3 28 28 H 1.09004 * 109.47200 * 59.99869 * 1 2 3 29 29 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47135 * 240.00361 * 2 1 3 31 31 H 1.08991 * 109.47414 * 120.00088 * 2 1 3 32 32 H 1.08999 * 109.47231 * 300.01029 * 4 3 2 33 33 H 1.09007 * 109.46911 * 60.00143 * 4 3 2 34 34 H 1.09002 * 109.46957 * 53.70159 * 10 9 8 35 35 H 1.09003 * 109.46608 * 173.69544 * 10 9 8 36 36 H 1.08993 * 109.47028 * 293.70238 * 10 9 8 37 37 H 1.08995 * 109.47166 * 180.02562 * 13 11 9 38 38 H 1.08999 * 109.46695 * 299.99939 * 13 11 9 39 39 H 1.09002 * 109.47271 * 59.99975 * 13 11 9 40 40 H 0.96998 * 120.00723 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46732 * 204.25002 * 23 22 8 42 42 H 1.09000 * 109.47236 * 324.24351 * 23 22 8 43 43 H 1.08995 * 109.46863 * 304.00406 * 24 23 22 44 44 H 1.08990 * 109.47166 * 293.77599 * 25 24 23 45 45 H 1.08998 * 109.47583 * 53.78342 * 25 24 23 46 46 H 1.09004 * 109.46614 * 173.77765 * 25 24 23 47 47 H 1.08996 * 109.46978 * 59.99697 * 26 24 23 48 48 H 1.08995 * 109.47156 * 180.02562 * 26 24 23 49 49 H 1.08999 * 109.47001 * 300.00059 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 7 4.0243 3.6612 -1.0479 7 7 4.3367 4.8545 -0.6868 8 6 4.3574 4.9329 0.6229 9 7 4.6578 6.0566 1.3762 10 6 5.9287 5.8857 2.0928 11 6 4.6848 7.2616 0.5365 12 1 3.7388 7.3541 0.0030 13 6 5.8305 7.1549 -0.4720 14 6 4.8920 8.4752 1.4056 15 1 4.9932 8.3625 2.4750 16 6 4.9526 9.7291 0.8357 17 7 4.8290 9.8664 -0.4663 18 14 5.2088 11.2334 1.9132 19 1 6.4972 11.1075 2.6408 20 1 5.2362 12.4515 1.0644 21 1 4.0961 11.3371 2.8913 22 7 4.0280 3.6989 1.1029 23 6 3.9197 3.2961 2.5073 24 6 2.5309 3.6597 3.0365 25 6 1.4707 2.8567 2.2801 26 6 2.4516 3.3306 4.5286 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8332 0.9767 0.8907 33 1 3.8340 0.9766 -0.8892 34 1 6.7108 5.6112 1.3850 35 1 6.1964 6.8203 2.5857 36 1 5.8218 5.0988 2.8394 37 1 5.8509 8.0492 -1.0947 38 1 6.7766 7.0625 0.0615 39 1 5.6806 6.2772 -1.1007 40 1 4.8712 10.7486 -0.8673 41 1 4.0694 2.2195 2.5890 42 1 4.6789 3.8140 3.0933 43 1 2.3535 4.7250 2.8894 44 1 1.4524 3.1714 1.2368 45 1 1.7110 1.7950 2.3352 46 1 0.4932 3.0317 2.7296 47 1 3.2070 3.9026 5.0674 48 1 1.4621 3.5892 4.9056 49 1 2.6291 2.2653 4.6757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359153685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:42 Heat of formation + Delta-G solvation = 26.462883 kcal Electronic energy + Delta-G solvation = -27830.064074 eV Core-core repulsion = 24214.761895 eV Total energy + Delta-G solvation = -3615.302180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.99694 -39.27597 -38.85085 -37.85172 -34.92217 -34.25907 -32.82416 -31.22877 -30.55234 -28.49207 -27.94018 -27.47410 -27.07145 -26.36615 -23.61438 -23.50577 -22.07753 -21.54257 -20.74628 -18.42220 -17.97855 -17.89428 -17.39175 -16.92679 -16.71747 -16.46521 -16.31426 -15.86373 -15.32062 -15.06774 -14.80340 -14.45254 -14.24139 -14.03086 -13.55933 -13.45752 -13.34343 -13.20024 -13.05328 -12.96922 -12.88143 -12.69139 -12.63308 -12.45350 -12.30875 -12.22453 -12.12855 -12.04831 -11.99385 -11.79736 -11.60767 -11.42832 -10.94489 -10.82472 -10.54753 -10.50349 -10.47637 -9.09960 -8.11348 -6.27060 0.72405 1.33566 1.45240 1.47634 1.55269 1.80222 2.42125 2.80799 3.05126 3.18014 3.51717 3.59615 3.78702 3.87499 4.01420 4.11606 4.17344 4.25280 4.26720 4.42417 4.43594 4.52029 4.58596 4.58802 4.65986 4.73501 4.82671 4.84229 4.90044 4.95189 5.00307 5.00803 5.10297 5.12838 5.13985 5.26448 5.28220 5.32969 5.40144 5.46418 5.49433 5.61547 5.64079 5.86215 6.06675 6.23156 6.23785 6.61004 6.82327 7.41810 7.84718 8.95089 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003884 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.451623 B = 7207.180047 C = 7842.847531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.399 6.399 4 C 0.164 3.836 5 C 0.171 3.829 6 N -0.319 5.319 7 N -0.364 5.364 8 C 0.371 3.629 9 N -0.456 5.456 10 C 0.037 3.963 11 C 0.243 3.757 12 H -0.005 1.005 13 C -0.159 4.159 14 C -0.525 4.525 15 H 0.073 0.927 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.970 3.030 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.270 1.270 22 N -0.463 5.463 23 C 0.108 3.892 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.132 4.132 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.046 0.954 40 H 0.262 0.738 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.043 0.957 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -23.169 10.880 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.319 6.319 4 C 0.085 3.915 5 C -0.098 4.098 6 N -0.159 5.159 7 N -0.208 5.208 8 C 0.014 3.986 9 N -0.179 5.179 10 C -0.109 4.109 11 C 0.137 3.863 12 H 0.013 0.987 13 C -0.219 4.219 14 C -0.563 4.563 15 H 0.091 0.909 16 C -0.188 4.188 17 N -0.559 5.559 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.195 1.195 22 N -0.158 5.158 23 C -0.012 4.012 24 C -0.130 4.130 25 C -0.185 4.185 26 C -0.190 4.190 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.910 -22.420 9.685 24.733 hybrid contribution 0.496 0.978 0.448 1.185 sum -3.415 -21.441 10.133 23.960 Atomic orbital electron populations 1.21765 0.93556 1.03240 1.02214 1.22702 0.95780 0.82080 1.01785 1.88054 1.19362 1.28795 1.95640 1.20512 0.83032 0.83687 1.04234 1.24836 1.05472 0.97367 0.82142 1.73840 1.17425 0.98211 1.26444 1.74732 1.24151 1.12584 1.09337 1.23117 1.00313 0.85989 0.89208 1.59230 1.33058 0.98696 1.26919 1.22457 0.87107 1.04031 0.97346 1.18895 0.93649 0.84180 0.89575 0.98714 1.22302 0.97830 1.01392 1.00336 1.21294 1.50352 0.90684 0.93993 0.90928 1.25804 0.94693 1.02049 0.96226 1.70087 1.50289 1.24027 1.11463 0.85435 0.79139 0.77694 0.78280 1.18797 1.21394 1.19534 1.46349 1.51957 1.07956 1.09550 1.22434 0.99605 1.03340 0.75870 1.21449 0.93826 0.99889 0.97838 1.21765 0.97805 1.00455 0.98518 1.21687 1.02650 1.02909 0.91760 0.92398 0.93526 0.88806 0.92230 0.90793 0.87996 0.88933 0.95812 0.89116 0.89374 0.92236 0.95310 0.93506 0.92859 0.85497 0.88084 0.93795 0.95328 0.90377 0.92774 0.92008 0.92005 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.40 -8.71 7.04 -148.98 -1.05 -9.76 16 4 C 0.16 3.41 6.09 71.24 0.43 3.84 16 5 C 0.17 5.62 6.71 137.64 0.92 6.55 16 6 N -0.32 -13.89 12.18 -49.54 -0.60 -14.49 16 7 N -0.36 -17.94 9.01 -58.00 -0.52 -18.46 16 8 C 0.37 16.07 6.67 260.11 1.74 17.81 16 9 N -0.46 -20.39 4.78 -711.00 -3.40 -23.79 16 10 C 0.04 1.36 8.55 127.69 1.09 2.45 16 11 C 0.24 13.26 2.06 44.17 0.09 13.35 16 12 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 13 C -0.16 -8.66 8.28 71.98 0.60 -8.06 16 14 C -0.52 -28.93 7.79 25.60 0.20 -28.73 16 15 H 0.07 3.78 6.82 -2.91 -0.02 3.76 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -55.20 11.32 21.44 0.24 -54.95 16 18 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 N -0.46 -15.09 2.51 -514.85 -1.29 -16.38 16 23 C 0.11 2.37 5.41 86.38 0.47 2.83 16 24 C -0.11 -2.50 3.13 -10.79 -0.03 -2.53 16 25 C -0.13 -2.87 7.51 71.98 0.54 -2.33 16 26 C -0.13 -2.00 9.19 71.98 0.66 -1.34 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.28 7.18 -2.39 -0.02 1.27 16 33 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.02 0.89 6.84 -2.39 -0.02 0.88 16 35 H 0.09 3.45 6.27 -2.39 -0.01 3.43 16 36 H 0.09 2.45 5.71 -2.39 -0.01 2.43 16 37 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 38 H 0.03 1.44 6.62 -2.39 -0.02 1.43 16 39 H 0.05 2.56 5.47 -2.39 -0.01 2.54 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.13 1.73 7.10 -2.39 -0.02 1.72 16 42 H 0.10 2.09 5.66 -2.39 -0.01 2.07 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.03 0.86 5.97 -2.39 -0.01 0.85 16 45 H 0.08 1.33 7.36 -2.39 -0.02 1.31 16 46 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -76.38 374.36 4.71 -71.67 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.93 Total: 15.75 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 8.37 Total: 4.87 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -5.57 Total: -128.08 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -76.38 4.71 -71.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359153685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.131 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds