Wall clock time and date at job start Fri Apr 10 2020 22:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.46836 * 2 1 4 4 C 1.42903 * 113.99715 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47387 * 179.97438 * 4 3 2 6 6 N 1.30300 * 126.34151 * 90.02189 * 5 4 3 7 7 N 1.28527 * 110.04958 * 179.97438 * 6 5 4 8 8 C 1.31218 * 109.86399 * 359.97438 * 7 6 5 9 9 N 1.38574 * 126.47634 * 179.97438 * 8 7 6 10 10 C 1.46899 * 111.00166 * 293.46399 * 9 8 7 11 11 C 1.46902 * 111.00239 * 57.42008 * 9 8 7 12 12 H 1.09003 * 109.46874 * 300.00062 * 11 9 8 13 13 C 1.53005 * 109.46944 * 59.99532 * 11 9 8 14 14 C 1.50696 * 109.47566 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00043 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00035 * 179.97438 * 14 11 9 17 17 N 1.31519 * 120.00361 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00148 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46946 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47271 * 119.99968 * 18 16 14 21 21 H 1.48500 * 109.47264 * 240.00202 * 18 16 14 22 22 N 1.36459 * 107.05210 * 359.76402 * 8 7 6 23 23 C 1.46498 * 127.13940 * 180.24500 * 22 8 7 24 24 C 1.53000 * 109.47410 * 84.55639 * 23 22 8 25 25 C 1.52988 * 109.47224 * 65.58667 * 24 23 22 26 26 C 1.52999 * 109.47119 * 185.59459 * 24 23 22 27 27 H 1.09003 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47107 * 300.00258 * 1 2 3 29 29 H 1.08998 * 109.47493 * 60.00084 * 1 2 3 30 30 H 1.08996 * 109.47113 * 239.99816 * 2 1 3 31 31 H 1.09004 * 109.46860 * 119.99692 * 2 1 3 32 32 H 1.09003 * 109.47389 * 299.99983 * 4 3 2 33 33 H 1.09003 * 109.47230 * 59.99990 * 4 3 2 34 34 H 1.09001 * 109.47019 * 59.53388 * 10 9 8 35 35 H 1.09004 * 109.46979 * 179.53151 * 10 9 8 36 36 H 1.08994 * 109.47450 * 299.53477 * 10 9 8 37 37 H 1.08992 * 109.47418 * 300.00766 * 13 11 9 38 38 H 1.09003 * 109.46902 * 60.00548 * 13 11 9 39 39 H 1.09004 * 109.46990 * 180.02562 * 13 11 9 40 40 H 0.96995 * 120.00482 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46999 * 204.55608 * 23 22 8 42 42 H 1.09007 * 109.46986 * 324.55380 * 23 22 8 43 43 H 1.09007 * 109.46875 * 305.58560 * 24 23 22 44 44 H 1.08998 * 109.47641 * 295.54203 * 25 24 23 45 45 H 1.08998 * 109.47331 * 55.53997 * 25 24 23 46 46 H 1.09006 * 109.47326 * 175.53603 * 25 24 23 47 47 H 1.09002 * 109.47478 * 59.99510 * 26 24 23 48 48 H 1.09000 * 109.47048 * 179.97438 * 26 24 23 49 49 H 1.09007 * 109.46513 * 299.99323 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 7 4.0185 3.6627 1.0491 7 7 4.3372 4.8543 0.6880 8 6 4.3593 4.9324 -0.6217 9 7 4.6597 6.0561 -1.3750 10 6 3.6344 7.0941 -1.2041 11 6 5.9933 6.5732 -1.0403 12 1 6.0243 6.8419 0.0157 13 6 7.0435 5.4972 -1.3239 14 6 6.2844 7.7917 -1.8779 15 1 5.5518 8.1468 -2.5875 16 6 7.4855 8.4539 -1.7374 17 7 8.3771 8.0225 -0.8721 18 14 7.8467 9.9639 -2.7761 19 1 6.6904 10.2406 -3.6660 20 1 8.0793 11.1313 -1.8883 21 1 9.0576 9.7197 -3.6003 22 7 4.0352 3.6969 -1.1017 23 6 3.9356 3.2918 -2.5061 24 6 5.3229 2.9105 -3.0266 25 6 5.8177 1.6626 -2.2927 26 6 5.2431 2.6219 -4.5270 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8332 0.9767 0.8908 33 1 3.8340 0.9765 -0.8892 34 1 3.5742 7.3757 -0.1528 35 1 3.8991 7.9678 -1.7996 36 1 2.6692 6.7091 -1.5329 37 1 6.8331 4.6157 -0.7184 38 1 7.0125 5.2286 -2.3798 39 1 8.0330 5.8808 -1.0751 40 1 9.2222 8.4881 -0.7735 41 1 3.2676 2.4346 -2.5904 42 1 3.5410 4.1193 -3.0958 43 1 6.0156 3.7337 -2.8513 44 1 5.9502 1.8914 -1.2353 45 1 5.0857 0.8625 -2.4023 46 1 6.7697 1.3446 -2.7178 47 1 4.8906 3.5111 -5.0498 48 1 6.2315 2.3507 -4.8979 49 1 4.5504 1.7987 -4.7022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359153690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:46 Heat of formation + Delta-G solvation = 34.883966 kcal Electronic energy + Delta-G solvation = -27791.590355 eV Core-core repulsion = 24176.653341 eV Total energy + Delta-G solvation = -3614.937014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.54383 -38.22351 -37.03171 -36.76737 -33.11656 -32.89755 -31.95678 -29.99820 -29.25771 -27.38256 -26.87655 -26.09202 -25.33208 -24.29750 -23.02300 -21.91138 -20.94430 -20.06019 -19.34770 -17.12594 -16.85158 -16.40546 -16.14987 -15.75356 -15.32105 -15.18173 -14.68480 -14.52299 -14.00334 -13.61902 -13.50379 -13.23258 -13.13247 -12.85567 -12.59376 -12.36200 -12.29435 -12.09432 -11.82619 -11.67106 -11.54894 -11.41999 -11.20978 -11.16704 -11.00078 -10.87934 -10.80638 -10.71564 -10.28460 -10.22344 -10.06672 -10.03099 -9.81106 -9.58218 -9.07689 -8.53682 -8.48356 -7.70110 -6.08254 -4.14782 2.04786 2.66272 3.21000 3.26208 3.34361 3.37501 3.77261 4.32142 4.54520 4.60642 4.65772 4.77130 4.78435 4.85181 4.97202 5.08737 5.11328 5.12952 5.23041 5.25087 5.43408 5.49480 5.55856 5.64319 5.65116 5.77119 5.78162 5.84708 5.86972 5.96516 6.07312 6.15764 6.23930 6.32835 6.35831 6.51251 6.62871 6.75092 6.88284 6.94150 6.95745 7.15527 7.39760 7.65801 7.74237 7.91799 8.17804 8.45646 8.89119 9.25138 9.50144 10.98663 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.003932 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.232167 B = 7119.868880 C = 7686.153841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.157 3.843 5 C 0.152 3.848 6 N -0.271 5.271 7 N -0.319 5.319 8 C 0.390 3.610 9 N -0.472 5.472 10 C 0.047 3.953 11 C 0.225 3.775 12 H 0.022 0.978 13 C -0.129 4.129 14 C -0.511 4.511 15 H 0.067 0.933 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.457 5.457 23 C 0.122 3.878 24 C -0.122 4.122 25 C -0.149 4.149 26 C -0.140 4.140 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.002 0.998 38 H 0.034 0.966 39 H 0.091 0.909 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -16.529 -5.026 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.302 6.302 4 C 0.078 3.922 5 C -0.115 4.115 6 N -0.114 5.114 7 N -0.163 5.163 8 C 0.034 3.966 9 N -0.200 5.200 10 C -0.101 4.101 11 C 0.121 3.879 12 H 0.039 0.961 13 C -0.187 4.187 14 C -0.549 4.549 15 H 0.085 0.915 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.151 5.151 23 C -0.001 4.001 24 C -0.141 4.141 25 C -0.206 4.206 26 C -0.198 4.198 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.140 -16.055 -4.028 19.411 hybrid contribution 0.420 0.397 -1.138 1.276 sum -9.720 -15.658 -5.165 19.139 Atomic orbital electron populations 1.21737 0.93595 1.02162 1.03340 1.22482 0.95751 0.83450 1.00235 1.87993 1.20027 1.26672 1.95473 1.20475 0.82121 0.87302 1.02265 1.23862 1.08229 0.95973 0.83399 1.73934 1.14972 0.98221 1.24287 1.74727 1.20637 1.11802 1.09117 1.22838 0.98284 0.87129 0.88301 1.59267 1.06800 1.02841 1.51064 1.22248 0.92034 0.94753 1.01020 1.19412 0.79186 0.92901 0.96414 0.96064 1.21854 1.03319 0.95713 0.97839 1.21088 1.01988 1.09804 1.22035 0.91467 1.24910 0.95981 0.97641 0.95424 1.69909 1.07763 1.40040 1.34852 0.86414 0.78280 0.82507 0.80044 1.19658 1.20999 1.21025 1.46331 1.51377 1.09414 1.07957 1.21885 0.98371 1.01649 0.78226 1.21653 0.96735 0.99960 0.95753 1.21930 1.01106 0.96821 1.00733 1.21720 1.02079 1.01627 0.94325 0.91051 0.91677 0.91886 0.93328 0.93006 0.89973 0.91335 0.94775 0.88827 0.93738 0.97890 0.94715 0.89046 0.92795 0.89660 0.88304 0.88220 0.92716 0.93000 0.92070 0.91993 0.92062 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.97 10.33 -35.23 -0.36 -5.33 16 4 C 0.16 2.00 5.87 36.01 0.21 2.21 16 5 C 0.15 2.67 6.65 -154.01 -1.02 1.64 16 6 N -0.27 -5.78 12.18 32.99 0.40 -5.38 16 7 N -0.32 -7.46 12.08 30.31 0.37 -7.09 16 8 C 0.39 8.29 5.07 -318.88 -1.62 6.68 16 9 N -0.47 -10.33 4.66 -176.08 -0.82 -11.15 16 10 C 0.05 0.95 9.25 60.06 0.56 1.50 16 11 C 0.23 5.70 1.98 -68.86 -0.14 5.57 16 12 H 0.02 0.63 8.06 -51.93 -0.42 0.21 16 13 C -0.13 -3.17 8.19 37.16 0.30 -2.87 16 14 C -0.51 -13.45 7.87 -34.44 -0.27 -13.72 16 15 H 0.07 1.72 6.41 -52.49 -0.34 1.39 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 18 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.46 -8.02 2.54 -114.08 -0.29 -8.31 16 23 C 0.12 1.66 5.35 -4.04 -0.02 1.64 16 24 C -0.12 -1.59 3.12 -90.63 -0.28 -1.87 16 25 C -0.15 -1.74 7.85 37.15 0.29 -1.45 16 26 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.71 5.41 -51.93 -0.28 0.43 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.87 6.09 -51.93 -0.32 1.56 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.00 0.05 7.22 -51.93 -0.38 -0.32 16 38 H 0.03 0.80 6.47 -51.93 -0.34 0.47 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.09 0.96 7.59 -51.93 -0.39 0.56 16 42 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.10 1.67 5.65 -51.92 -0.29 1.38 16 44 H 0.05 0.76 6.91 -51.93 -0.36 0.40 16 45 H 0.05 0.48 6.99 -51.93 -0.36 0.12 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -31.60 383.63 -8.85 -40.45 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.42 Total: -0.09 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.11 Total: -0.20 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.29 Total: -56.29 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.36 Total: -5.33 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.60 -8.85 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359153690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.337 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds