Wall clock time and date at job start Fri Apr 10 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.46836 * 2 1 4 4 C 1.42903 * 113.99715 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47387 * 179.97438 * 4 3 2 6 6 N 1.30300 * 126.34151 * 90.02189 * 5 4 3 7 7 N 1.28527 * 110.04958 * 179.97438 * 6 5 4 8 8 C 1.31218 * 109.86399 * 359.97438 * 7 6 5 9 9 N 1.38574 * 126.47634 * 179.97438 * 8 7 6 10 10 C 1.46899 * 111.00166 * 293.46399 * 9 8 7 11 11 C 1.46902 * 111.00239 * 57.42008 * 9 8 7 12 12 H 1.09003 * 109.46874 * 300.00062 * 11 9 8 13 13 C 1.53005 * 109.46944 * 59.99532 * 11 9 8 14 14 C 1.50696 * 109.47566 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00043 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00035 * 179.97438 * 14 11 9 17 17 N 1.31519 * 120.00361 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00148 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46946 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47271 * 119.99968 * 18 16 14 21 21 H 1.48500 * 109.47264 * 240.00202 * 18 16 14 22 22 N 1.36459 * 107.05210 * 359.76402 * 8 7 6 23 23 C 1.46498 * 127.13940 * 180.24500 * 22 8 7 24 24 C 1.53000 * 109.47410 * 84.55639 * 23 22 8 25 25 C 1.52988 * 109.47224 * 65.58667 * 24 23 22 26 26 C 1.52999 * 109.47119 * 185.59459 * 24 23 22 27 27 H 1.09003 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47107 * 300.00258 * 1 2 3 29 29 H 1.08998 * 109.47493 * 60.00084 * 1 2 3 30 30 H 1.08996 * 109.47113 * 239.99816 * 2 1 3 31 31 H 1.09004 * 109.46860 * 119.99692 * 2 1 3 32 32 H 1.09003 * 109.47389 * 299.99983 * 4 3 2 33 33 H 1.09003 * 109.47230 * 59.99990 * 4 3 2 34 34 H 1.09001 * 109.47019 * 59.53388 * 10 9 8 35 35 H 1.09004 * 109.46979 * 179.53151 * 10 9 8 36 36 H 1.08994 * 109.47450 * 299.53477 * 10 9 8 37 37 H 1.08992 * 109.47418 * 300.00766 * 13 11 9 38 38 H 1.09003 * 109.46902 * 60.00548 * 13 11 9 39 39 H 1.09004 * 109.46990 * 180.02562 * 13 11 9 40 40 H 0.96995 * 120.00482 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46999 * 204.55608 * 23 22 8 42 42 H 1.09007 * 109.46986 * 324.55380 * 23 22 8 43 43 H 1.09007 * 109.46875 * 305.58560 * 24 23 22 44 44 H 1.08998 * 109.47641 * 295.54203 * 25 24 23 45 45 H 1.08998 * 109.47331 * 55.53997 * 25 24 23 46 46 H 1.09006 * 109.47326 * 175.53603 * 25 24 23 47 47 H 1.09002 * 109.47478 * 59.99510 * 26 24 23 48 48 H 1.09000 * 109.47048 * 179.97438 * 26 24 23 49 49 H 1.09007 * 109.46513 * 299.99323 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 7 4.0185 3.6627 1.0491 7 7 4.3372 4.8543 0.6880 8 6 4.3593 4.9324 -0.6217 9 7 4.6597 6.0561 -1.3750 10 6 3.6344 7.0941 -1.2041 11 6 5.9933 6.5732 -1.0403 12 1 6.0243 6.8419 0.0157 13 6 7.0435 5.4972 -1.3239 14 6 6.2844 7.7917 -1.8779 15 1 5.5518 8.1468 -2.5875 16 6 7.4855 8.4539 -1.7374 17 7 8.3771 8.0225 -0.8721 18 14 7.8467 9.9639 -2.7761 19 1 6.6904 10.2406 -3.6660 20 1 8.0793 11.1313 -1.8883 21 1 9.0576 9.7197 -3.6003 22 7 4.0352 3.6969 -1.1017 23 6 3.9356 3.2918 -2.5061 24 6 5.3229 2.9105 -3.0266 25 6 5.8177 1.6626 -2.2927 26 6 5.2431 2.6219 -4.5270 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8332 0.9767 0.8908 33 1 3.8340 0.9765 -0.8892 34 1 3.5742 7.3757 -0.1528 35 1 3.8991 7.9678 -1.7996 36 1 2.6692 6.7091 -1.5329 37 1 6.8331 4.6157 -0.7184 38 1 7.0125 5.2286 -2.3798 39 1 8.0330 5.8808 -1.0751 40 1 9.2222 8.4881 -0.7735 41 1 3.2676 2.4346 -2.5904 42 1 3.5410 4.1193 -3.0958 43 1 6.0156 3.7337 -2.8513 44 1 5.9502 1.8914 -1.2353 45 1 5.0857 0.8625 -2.4023 46 1 6.7697 1.3446 -2.7178 47 1 4.8906 3.5111 -5.0498 48 1 6.2315 2.3507 -4.8979 49 1 4.5504 1.7987 -4.7022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359153690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:45 Heat of formation + Delta-G solvation = 15.844282 kcal Electronic energy + Delta-G solvation = -27792.415978 eV Core-core repulsion = 24176.653341 eV Total energy + Delta-G solvation = -3615.762637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.05356 -39.20242 -38.72348 -37.91898 -34.97137 -34.27112 -32.90718 -31.48550 -30.94628 -28.53457 -27.97174 -27.43422 -27.01753 -26.06475 -23.67852 -23.65451 -22.23905 -21.44030 -20.84229 -18.53671 -18.11813 -17.98813 -17.42420 -17.07886 -16.62741 -16.40409 -16.36988 -15.74551 -15.50608 -15.02730 -14.88341 -14.42233 -14.20898 -14.09378 -13.87390 -13.60150 -13.25161 -13.17210 -13.07074 -13.00134 -12.82155 -12.72154 -12.64737 -12.46576 -12.40735 -12.30489 -12.18822 -12.17293 -12.06312 -11.92957 -11.60569 -11.50039 -11.08401 -10.91549 -10.64146 -10.58650 -10.08940 -9.55613 -8.14786 -6.29037 0.63717 1.27639 1.44434 1.46256 1.58177 1.69839 2.41273 2.71836 3.01359 3.17195 3.45215 3.58566 3.75779 3.82282 4.07732 4.11362 4.15442 4.21816 4.26141 4.37083 4.44384 4.52481 4.54447 4.59319 4.63733 4.72563 4.74089 4.77301 4.86356 4.87242 4.89430 4.93656 4.96308 5.01855 5.06330 5.08830 5.22548 5.29521 5.35671 5.37887 5.42659 5.54392 5.64171 5.88268 5.96048 6.12943 6.14395 6.60326 6.81731 7.40159 7.70050 8.92644 Molecular weight = 310.21amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.003932 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.232167 B = 7119.868880 C = 7686.153841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.160 3.840 5 C 0.175 3.825 6 N -0.315 5.315 7 N -0.363 5.363 8 C 0.371 3.629 9 N -0.463 5.463 10 C 0.050 3.950 11 C 0.236 3.764 12 H -0.031 1.031 13 C -0.105 4.105 14 C -0.520 4.520 15 H 0.075 0.925 16 C 0.013 3.987 17 N -0.922 5.922 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.285 1.285 21 H -0.280 1.280 22 N -0.449 5.449 23 C 0.115 3.885 24 C -0.120 4.120 25 C -0.145 4.145 26 C -0.133 4.133 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.014 0.986 35 H 0.094 0.906 36 H 0.072 0.928 37 H -0.003 1.003 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -18.777 -7.602 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.328 6.328 4 C 0.082 3.918 5 C -0.094 4.094 6 N -0.157 5.157 7 N -0.207 5.207 8 C 0.014 3.986 9 N -0.189 5.189 10 C -0.098 4.098 11 C 0.131 3.869 12 H -0.014 1.014 13 C -0.163 4.163 14 C -0.559 4.559 15 H 0.093 0.907 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.211 1.211 21 H -0.206 1.206 22 N -0.141 5.141 23 C -0.007 4.007 24 C -0.139 4.139 25 C -0.203 4.203 26 C -0.190 4.190 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.032 0.968 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.016 0.984 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.532 -18.328 -6.620 22.644 hybrid contribution 0.765 0.956 -0.296 1.260 sum -10.766 -17.372 -6.916 21.576 Atomic orbital electron populations 1.21779 0.93085 1.03549 1.02391 1.22788 0.96165 0.81662 1.02002 1.87953 1.19517 1.29508 1.95781 1.20675 0.82795 0.83923 1.04422 1.24826 1.04821 0.97369 0.82377 1.73836 1.17459 0.98199 1.26220 1.74592 1.21922 1.13485 1.10736 1.22719 0.99771 0.88062 0.88065 1.59212 1.05632 1.03360 1.50715 1.22267 0.92940 0.94696 0.99852 1.19074 0.81417 0.93220 0.93235 1.01351 1.21560 1.01563 0.95019 0.98189 1.21355 1.02274 1.10203 1.22038 0.90698 1.25774 0.95759 1.00579 0.96485 1.70063 1.08193 1.41436 1.36377 0.85339 0.78427 0.78464 0.78396 1.18258 1.21108 1.20575 1.46508 1.50156 1.07911 1.09564 1.22278 0.99612 1.02926 0.75840 1.21593 0.95178 0.99090 0.98019 1.21916 1.02568 0.97078 0.98691 1.21678 1.03112 1.02518 0.91722 0.88492 0.93126 0.92354 0.90788 0.91931 0.88829 0.88102 0.96755 0.88783 0.90938 0.98414 0.93636 0.91741 0.92785 0.86049 0.88494 0.92564 0.95472 0.89595 0.91413 0.92450 0.91750 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.41 -9.47 10.33 -148.98 -1.54 -11.01 16 4 C 0.16 3.66 5.87 71.24 0.42 4.08 16 5 C 0.17 6.00 6.65 137.64 0.91 6.91 16 6 N -0.32 -13.81 12.18 -49.54 -0.60 -14.41 16 7 N -0.36 -17.82 12.08 -58.00 -0.70 -18.53 16 8 C 0.37 16.21 5.07 260.11 1.32 17.53 16 9 N -0.46 -20.81 4.66 -710.99 -3.31 -24.12 16 10 C 0.05 2.05 9.25 127.69 1.18 3.23 16 11 C 0.24 12.52 1.98 44.17 0.09 12.61 16 12 H -0.03 -1.96 8.06 -2.39 -0.02 -1.98 16 13 C -0.11 -5.40 8.19 71.98 0.59 -4.81 16 14 C -0.52 -27.98 7.87 25.60 0.20 -27.78 16 15 H 0.08 3.84 6.41 -2.91 -0.02 3.82 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 18 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 N -0.45 -15.46 2.54 -514.85 -1.31 -16.77 16 23 C 0.11 2.86 5.35 86.38 0.46 3.32 16 24 C -0.12 -2.88 3.12 -10.80 -0.03 -2.91 16 25 C -0.15 -3.01 7.85 71.98 0.56 -2.44 16 26 C -0.13 -2.30 9.19 71.98 0.66 -1.64 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.62 5.41 -2.39 -0.01 1.61 16 34 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.09 3.80 6.09 -2.39 -0.01 3.79 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.00 -0.16 7.22 -2.39 -0.02 -0.18 16 38 H 0.04 2.18 6.47 -2.39 -0.02 2.17 16 39 H 0.06 3.65 6.07 -2.38 -0.01 3.64 16 40 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.12 2.17 7.59 -2.39 -0.02 2.15 16 42 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.06 1.87 5.65 -2.38 -0.01 1.86 16 44 H 0.03 0.70 6.91 -2.39 -0.02 0.69 16 45 H 0.09 1.17 6.99 -2.39 -0.02 1.16 16 46 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -73.37 383.63 3.77 -69.60 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.92 Total: 14.66 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 8.04 Total: 9.25 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.68 Total: -127.20 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.54 Total: -11.01 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.37 3.77 -69.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359153690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.445 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds