Wall clock time and date at job start Fri Apr 10 2020 22:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47153 * 2 1 4 4 C 1.52997 * 109.47173 * 239.99776 * 2 1 3 5 5 C 1.52999 * 109.46818 * 120.00089 * 2 1 3 6 6 C 1.53003 * 109.47283 * 59.99936 * 5 2 1 7 7 C 1.52997 * 109.46925 * 179.97438 * 6 5 2 8 8 C 1.50702 * 109.46796 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00069 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00391 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47453 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.49614 * 304.93522 * 12 11 10 14 14 C 1.53036 * 109.49746 * 184.83375 * 12 11 10 15 15 C 1.53043 * 109.53483 * 178.68184 * 14 12 11 16 16 C 1.53188 * 109.31162 * 61.36983 * 15 14 12 17 17 N 1.46925 * 108.77372 * 305.35923 * 16 15 14 18 18 C 1.36942 * 120.63049 * 233.63246 * 17 16 15 19 19 H 1.07997 * 119.99923 * 151.81247 * 18 17 16 20 20 C 1.38812 * 120.00087 * 331.80835 * 18 17 16 21 21 N 1.31619 * 119.99938 * 343.08706 * 20 18 17 22 22 Si 1.86797 * 120.00187 * 163.09153 * 20 18 17 23 23 H 1.48502 * 109.46908 * 59.99880 * 22 20 18 24 24 H 1.48496 * 109.47246 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46935 * 300.00085 * 22 20 18 26 26 C 1.46922 * 118.74095 * 53.61424 * 17 16 15 27 27 H 1.08995 * 109.46957 * 300.00187 * 1 2 3 28 28 H 1.09002 * 109.46633 * 59.99747 * 1 2 3 29 29 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47243 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47558 * 299.99687 * 3 2 1 32 32 H 1.09004 * 109.47267 * 59.99885 * 3 2 1 33 33 H 1.08996 * 109.47467 * 300.00288 * 4 2 1 34 34 H 1.09000 * 109.47107 * 60.00152 * 4 2 1 35 35 H 1.08993 * 109.47367 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47035 * 299.99767 * 5 2 1 37 37 H 1.08998 * 109.47212 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46899 * 300.00072 * 6 5 2 39 39 H 1.09002 * 109.46721 * 60.00067 * 6 5 2 40 40 H 1.08998 * 109.47460 * 299.99813 * 7 6 5 41 41 H 1.08993 * 109.47393 * 60.00353 * 7 6 5 42 42 H 0.97001 * 119.99907 * 359.97438 * 10 8 7 43 43 H 1.08998 * 109.46559 * 299.99597 * 11 10 8 44 44 H 1.08993 * 109.46967 * 59.99324 * 11 10 8 45 45 H 1.09000 * 109.45974 * 298.70338 * 14 12 11 46 46 H 1.09004 * 109.45851 * 58.66409 * 14 12 11 47 47 H 1.08996 * 109.49807 * 301.41035 * 15 14 12 48 48 H 1.09003 * 109.49247 * 181.32054 * 15 14 12 49 49 H 1.09008 * 109.58427 * 185.57429 * 16 15 14 50 50 H 1.08997 * 109.70817 * 65.22332 * 16 15 14 51 51 H 0.96996 * 120.00173 * 179.97438 * 21 20 18 52 52 H 1.08999 * 109.59086 * 186.60291 * 26 17 16 53 53 H 1.09003 * 109.58835 * 66.17146 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 6 2.0404 -2.8852 2.4982 8 6 1.5386 -4.3062 2.4978 9 8 0.8409 -4.7027 1.5885 10 7 1.8642 -5.1361 3.5086 11 6 1.3768 -6.5177 3.5080 12 6 1.8871 -7.2391 4.7570 13 1 2.9735 -7.1627 4.8029 14 6 1.4800 -8.7131 4.6977 15 6 2.0183 -9.4428 5.9306 16 6 1.4087 -8.8233 7.1921 17 7 1.6719 -7.3778 7.1837 18 6 2.2750 -6.7722 8.2537 19 1 2.8654 -5.8799 8.1069 20 6 2.1273 -7.3051 9.5269 21 7 1.1656 -8.1699 9.7708 22 14 3.2934 -6.7948 10.8940 23 1 3.1964 -5.3281 11.1055 24 1 2.9254 -7.5006 12.1477 25 1 4.6850 -7.1495 10.5158 26 6 1.2762 -6.5946 6.0053 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7217 1.2491 38 1 0.4400 -2.1637 1.2492 39 1 1.8934 -2.6776 0.3592 40 1 3.1304 -2.8852 2.4978 41 1 1.6775 -2.3715 3.3883 42 1 2.4219 -4.8189 4.2361 43 1 0.2868 -6.5183 3.5076 44 1 1.7408 -7.0310 2.6181 45 1 0.3929 -8.7890 4.6766 46 1 1.8932 -9.1680 3.7974 47 1 3.1034 -9.3462 5.9656 48 1 1.7480 -10.4973 5.8760 49 1 1.8627 -9.2722 8.0756 50 1 0.3331 -8.9988 7.2050 51 1 1.0626 -8.5426 10.6604 52 1 1.6427 -5.5729 6.1056 53 1 0.1896 -6.5884 5.9187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359421390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:50 Heat of formation + Delta-G solvation = -63.982571 kcal Electronic energy + Delta-G solvation = -26116.084519 eV Core-core repulsion = 22600.400674 eV Total energy + Delta-G solvation = -3515.683846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.76749 -38.33554 -37.71763 -34.79911 -33.25956 -32.92726 -30.48514 -30.38882 -27.76311 -27.51691 -27.44807 -25.36936 -25.06385 -22.44138 -22.00563 -20.89734 -20.17335 -19.07821 -18.84175 -16.99067 -16.53207 -16.01816 -15.80450 -15.03355 -14.90783 -14.79685 -14.47982 -14.32612 -13.96097 -13.67963 -13.47384 -13.40894 -12.80568 -12.79043 -12.62268 -12.35886 -12.18720 -12.12722 -11.94866 -11.94141 -11.84811 -11.78355 -11.29255 -11.06583 -11.02587 -10.74403 -10.71008 -10.66207 -10.56260 -10.51716 -10.25875 -10.19430 -9.96378 -9.79398 -9.51135 -9.43739 -8.87754 -8.48459 -6.69318 -5.81263 -3.24555 2.76159 3.34139 3.35467 3.41820 3.42375 4.44292 4.45934 4.54615 4.55566 4.82154 4.92569 4.99328 5.11592 5.27634 5.28932 5.31114 5.33975 5.43257 5.45582 5.48925 5.50271 5.53555 5.53971 5.61070 5.63650 5.67337 5.73803 5.82776 5.84618 5.93424 5.96396 6.00010 6.03722 6.06734 6.22428 6.23670 6.28887 6.32897 6.37005 6.55469 6.58028 6.69679 6.76977 6.84895 6.95504 7.38230 7.64285 7.66151 7.75793 8.35047 8.42342 9.18428 9.81934 10.39053 11.27002 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002390 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.605124 B =11713.359838 C =12871.460057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.143 4.143 8 C 0.509 3.491 9 O -0.550 6.550 10 N -0.726 5.726 11 C 0.127 3.873 12 C -0.117 4.117 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.154 3.846 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.403 0.597 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.018 0.982 51 H 0.255 0.745 52 H 0.050 0.950 53 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 12.498 -17.802 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.147 4.147 6 C -0.144 4.144 7 C -0.183 4.183 8 C 0.296 3.704 9 O -0.428 6.428 10 N -0.377 5.377 11 C 0.003 3.997 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.028 3.972 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.237 0.763 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.104 0.896 50 H 0.036 0.964 51 H 0.065 0.935 52 H 0.068 0.932 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.927 12.125 -18.258 22.002 hybrid contribution 0.849 0.313 1.212 1.513 sum 2.775 12.439 -17.046 21.283 Atomic orbital electron populations 1.21950 0.94607 1.02275 1.01434 1.20534 0.95787 0.95189 0.95491 1.21876 1.00851 0.95540 1.01592 1.21943 1.00811 1.00752 0.96713 1.21675 1.00493 0.95267 0.97313 1.21467 1.01796 0.94284 0.96883 1.21712 1.02500 0.92800 1.01274 1.20725 0.80234 0.87778 0.81695 1.90675 1.38280 1.77665 1.36162 1.46141 1.53590 1.12806 1.25185 1.21436 0.99238 0.80731 0.98306 1.21949 1.01014 0.95994 0.94842 0.90938 1.21344 1.00461 0.94128 0.97870 1.22169 1.00575 0.98009 0.97320 1.20793 0.96651 0.83564 0.94674 1.44031 1.69736 1.02797 1.14830 1.19108 1.23382 1.10615 0.85340 0.91823 1.25053 0.97360 1.00045 0.97137 1.70025 1.30120 1.33428 1.20990 0.86375 0.80917 0.78078 0.81406 1.20893 1.21623 1.21032 1.20893 0.95833 0.94097 0.86412 0.92739 0.93005 0.91963 0.92776 0.92841 0.92728 0.91991 0.92999 0.92820 0.91860 0.91957 0.90919 0.91019 0.89121 0.88917 0.76251 0.91725 0.92160 0.92494 0.93473 0.92767 0.93189 0.89603 0.96431 0.93548 0.93172 0.96400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.12 37.16 0.30 -0.82 16 2 C -0.07 -0.52 0.80 -154.51 -0.12 -0.64 16 3 C -0.14 -0.94 8.47 37.15 0.31 -0.62 16 4 C -0.14 -1.09 8.12 37.16 0.30 -0.79 16 5 C -0.11 -0.85 4.27 -26.73 -0.11 -0.96 16 6 C -0.11 -1.01 3.80 -26.73 -0.10 -1.11 16 7 C -0.14 -1.37 5.70 -27.88 -0.16 -1.53 16 8 C 0.51 6.84 7.83 -10.98 -0.09 6.75 16 9 O -0.55 -9.38 15.98 5.56 0.09 -9.29 16 10 N -0.73 -9.53 5.33 -60.29 -0.32 -9.85 16 11 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 12 C -0.12 -1.92 2.38 -90.50 -0.21 -2.13 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 15 C -0.14 -2.65 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 17 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 18 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 19 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.91 11.20 55.49 0.62 -25.29 16 22 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.08 5.60 -3.71 -0.02 3.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.78 6.39 -51.93 -0.33 0.45 16 39 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 4.69 7.70 -40.82 -0.31 4.38 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.09 2.27 6.06 -51.92 -0.31 1.95 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 52 H 0.05 0.95 7.13 -51.93 -0.37 0.58 16 53 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -30.54 403.17 -9.89 -40.42 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -10.33 Total: 1.16 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.47 Total: -4.55 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.22 Total: -50.09 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.54 -9.89 -40.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.559 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds