Wall clock time and date at job start Fri Apr 10 2020 22:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47153 * 2 1 4 4 C 1.52997 * 109.47173 * 239.99776 * 2 1 3 5 5 C 1.52999 * 109.46818 * 120.00089 * 2 1 3 6 6 C 1.53003 * 109.47283 * 59.99936 * 5 2 1 7 7 C 1.52997 * 109.46925 * 179.97438 * 6 5 2 8 8 C 1.50702 * 109.46796 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00069 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00391 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47453 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.49614 * 304.93522 * 12 11 10 14 14 C 1.53036 * 109.49746 * 184.83375 * 12 11 10 15 15 C 1.53043 * 109.53483 * 178.68184 * 14 12 11 16 16 C 1.53188 * 109.31162 * 61.36983 * 15 14 12 17 17 N 1.46925 * 108.77372 * 305.35923 * 16 15 14 18 18 C 1.36942 * 120.63049 * 233.63246 * 17 16 15 19 19 H 1.07997 * 119.99923 * 151.81247 * 18 17 16 20 20 C 1.38812 * 120.00087 * 331.80835 * 18 17 16 21 21 N 1.31619 * 119.99938 * 343.08706 * 20 18 17 22 22 Si 1.86797 * 120.00187 * 163.09153 * 20 18 17 23 23 H 1.48502 * 109.46908 * 59.99880 * 22 20 18 24 24 H 1.48496 * 109.47246 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46935 * 300.00085 * 22 20 18 26 26 C 1.46922 * 118.74095 * 53.61424 * 17 16 15 27 27 H 1.08995 * 109.46957 * 300.00187 * 1 2 3 28 28 H 1.09002 * 109.46633 * 59.99747 * 1 2 3 29 29 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47243 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47558 * 299.99687 * 3 2 1 32 32 H 1.09004 * 109.47267 * 59.99885 * 3 2 1 33 33 H 1.08996 * 109.47467 * 300.00288 * 4 2 1 34 34 H 1.09000 * 109.47107 * 60.00152 * 4 2 1 35 35 H 1.08993 * 109.47367 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47035 * 299.99767 * 5 2 1 37 37 H 1.08998 * 109.47212 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46899 * 300.00072 * 6 5 2 39 39 H 1.09002 * 109.46721 * 60.00067 * 6 5 2 40 40 H 1.08998 * 109.47460 * 299.99813 * 7 6 5 41 41 H 1.08993 * 109.47393 * 60.00353 * 7 6 5 42 42 H 0.97001 * 119.99907 * 359.97438 * 10 8 7 43 43 H 1.08998 * 109.46559 * 299.99597 * 11 10 8 44 44 H 1.08993 * 109.46967 * 59.99324 * 11 10 8 45 45 H 1.09000 * 109.45974 * 298.70338 * 14 12 11 46 46 H 1.09004 * 109.45851 * 58.66409 * 14 12 11 47 47 H 1.08996 * 109.49807 * 301.41035 * 15 14 12 48 48 H 1.09003 * 109.49247 * 181.32054 * 15 14 12 49 49 H 1.09008 * 109.58427 * 185.57429 * 16 15 14 50 50 H 1.08997 * 109.70817 * 65.22332 * 16 15 14 51 51 H 0.96996 * 120.00173 * 179.97438 * 21 20 18 52 52 H 1.08999 * 109.59086 * 186.60291 * 26 17 16 53 53 H 1.09003 * 109.58835 * 66.17146 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 6 2.0404 -2.8852 2.4982 8 6 1.5386 -4.3062 2.4978 9 8 0.8409 -4.7027 1.5885 10 7 1.8642 -5.1361 3.5086 11 6 1.3768 -6.5177 3.5080 12 6 1.8871 -7.2391 4.7570 13 1 2.9735 -7.1627 4.8029 14 6 1.4800 -8.7131 4.6977 15 6 2.0183 -9.4428 5.9306 16 6 1.4087 -8.8233 7.1921 17 7 1.6719 -7.3778 7.1837 18 6 2.2750 -6.7722 8.2537 19 1 2.8654 -5.8799 8.1069 20 6 2.1273 -7.3051 9.5269 21 7 1.1656 -8.1699 9.7708 22 14 3.2934 -6.7948 10.8940 23 1 3.1964 -5.3281 11.1055 24 1 2.9254 -7.5006 12.1477 25 1 4.6850 -7.1495 10.5158 26 6 1.2762 -6.5946 6.0053 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7217 1.2491 38 1 0.4400 -2.1637 1.2492 39 1 1.8934 -2.6776 0.3592 40 1 3.1304 -2.8852 2.4978 41 1 1.6775 -2.3715 3.3883 42 1 2.4219 -4.8189 4.2361 43 1 0.2868 -6.5183 3.5076 44 1 1.7408 -7.0310 2.6181 45 1 0.3929 -8.7890 4.6766 46 1 1.8932 -9.1680 3.7974 47 1 3.1034 -9.3462 5.9656 48 1 1.7480 -10.4973 5.8760 49 1 1.8627 -9.2722 8.0756 50 1 0.3331 -8.9988 7.2050 51 1 1.0626 -8.5426 10.6604 52 1 1.6427 -5.5729 6.1056 53 1 0.1896 -6.5884 5.9187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359421390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:49 Heat of formation + Delta-G solvation = -80.380368 kcal Electronic energy + Delta-G solvation = -26116.795581 eV Core-core repulsion = 22600.400674 eV Total energy + Delta-G solvation = -3516.394907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.86209 -39.43368 -38.81199 -36.23770 -34.65331 -33.98082 -32.30082 -31.89278 -28.57972 -28.11774 -28.06935 -27.23725 -26.34467 -23.85830 -23.22708 -22.30796 -21.30963 -20.51935 -19.49749 -18.67901 -17.78958 -16.98707 -16.88435 -16.77025 -16.09316 -15.72815 -15.56449 -15.36042 -15.07230 -14.95085 -14.69700 -14.54797 -14.45870 -14.01848 -13.75231 -13.65427 -13.35516 -13.08420 -13.00738 -12.85257 -12.64988 -12.53324 -12.49845 -12.46066 -12.43782 -12.29973 -11.97902 -11.82457 -11.70404 -11.58383 -11.39193 -11.32811 -11.27847 -11.22647 -11.10387 -10.72382 -10.51982 -10.02111 -8.67317 -7.86106 -5.32361 1.47905 1.50380 1.56913 1.71606 2.31229 2.51876 3.28654 3.60247 3.78305 3.84817 3.96455 3.99659 4.01539 4.04402 4.09092 4.22967 4.31738 4.40531 4.57778 4.59959 4.67566 4.70066 4.72377 4.76523 4.82921 4.87202 4.88981 4.90337 4.92673 4.97464 5.00695 5.01739 5.10193 5.12131 5.14029 5.23955 5.26490 5.26957 5.33220 5.38040 5.40910 5.49474 5.52335 5.57733 5.59652 5.63998 5.67219 5.78276 6.39588 6.61754 7.15429 7.31027 7.86789 8.39235 9.20126 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002390 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.605124 B =11713.359838 C =12871.460057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.102 4.102 7 C -0.136 4.136 8 C 0.506 3.494 9 O -0.590 6.590 10 N -0.722 5.722 11 C 0.137 3.863 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.153 3.847 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.412 0.588 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.051 0.949 50 H -0.008 1.008 51 H 0.249 0.751 52 H 0.059 0.941 53 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 13.915 -18.838 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.201 4.201 5 C -0.142 4.142 6 C -0.140 4.140 7 C -0.176 4.176 8 C 0.294 3.706 9 O -0.471 6.471 10 N -0.374 5.374 11 C 0.013 3.987 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.203 1.203 26 C 0.027 3.973 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.248 0.752 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.010 0.990 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 3.729 13.568 -19.310 23.893 hybrid contribution 0.233 -0.119 1.501 1.523 sum 3.962 13.448 -17.810 22.666 Atomic orbital electron populations 1.21941 0.95079 1.01458 1.01741 1.20559 0.95428 0.95837 0.95351 1.21847 1.01148 0.94726 1.01876 1.21928 1.01106 1.00034 0.97028 1.21637 1.01030 0.93875 0.97638 1.21401 1.00716 0.95445 0.96432 1.21760 1.03877 0.90042 1.01884 1.21405 0.79336 0.89029 0.80784 1.90662 1.40128 1.78620 1.37676 1.46116 1.53482 1.12248 1.25529 1.21213 0.98440 0.81616 0.97478 1.21706 1.00836 0.95883 0.93527 0.90448 1.21347 1.00386 0.93994 0.97895 1.21995 1.00122 0.99015 0.95735 1.20628 0.95063 0.83768 0.95861 1.44311 1.69912 1.03473 1.15582 1.19512 1.22955 1.10574 0.86113 0.91053 1.25839 0.98892 1.00649 0.99506 1.70194 1.31999 1.35088 1.21042 0.85339 0.78998 0.77898 0.78201 1.19930 1.22420 1.20293 1.21019 0.95194 0.94553 0.86489 0.92547 0.92598 0.93323 0.92264 0.92572 0.92483 0.93275 0.92636 0.92289 0.91285 0.90921 0.92663 0.92255 0.86671 0.87248 0.75181 0.92995 0.91357 0.92831 0.90257 0.92757 0.91306 0.93032 0.99039 0.94215 0.92291 0.97883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.12 71.98 0.58 -1.55 16 2 C -0.07 -0.96 0.80 -52.18 -0.04 -1.00 16 3 C -0.14 -1.56 8.47 71.98 0.61 -0.95 16 4 C -0.14 -2.00 8.12 71.98 0.58 -1.42 16 5 C -0.10 -1.40 4.27 30.60 0.13 -1.26 16 6 C -0.10 -1.82 3.80 30.59 0.12 -1.70 16 7 C -0.14 -2.29 5.70 29.85 0.17 -2.12 16 8 C 0.51 12.83 7.83 87.66 0.69 13.51 16 9 O -0.59 -19.82 15.98 -3.03 -0.05 -19.87 16 10 N -0.72 -17.53 5.33 -463.06 -2.47 -20.00 16 11 C 0.14 3.77 5.07 86.38 0.44 4.21 16 12 C -0.10 -3.05 2.38 -10.72 -0.03 -3.08 16 13 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.10 -3.02 5.17 30.62 0.16 -2.86 16 15 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 16 C 0.17 8.28 5.30 86.36 0.46 8.74 16 17 N -0.61 -29.86 2.99 -699.09 -2.09 -31.95 16 18 C -0.26 -13.96 9.58 84.03 0.81 -13.15 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 21 N -0.94 -55.41 11.20 21.65 0.24 -55.16 16 22 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.15 6.01 5.60 86.37 0.48 6.49 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.84 6.43 -2.39 -0.02 0.82 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 33 H 0.05 0.81 6.43 -2.39 -0.02 0.79 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 1.18 6.39 -2.39 -0.02 1.16 16 39 H 0.06 1.21 6.39 -2.39 -0.02 1.19 16 40 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.41 8.55 7.70 -92.71 -0.71 7.84 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.05 2.81 6.06 -2.38 -0.01 2.80 16 50 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 51 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 52 H 0.06 2.17 7.13 -2.39 -0.02 2.15 16 53 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -67.10 403.17 3.56 -63.54 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.13 Total: 20.60 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.76 Total: -3.22 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.32 Total: -107.11 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.10 3.56 -63.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.836 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds