Wall clock time and date at job start Fri Apr 10 2020 22:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47153 * 2 1 4 4 C 1.52995 * 109.47105 * 239.99738 * 2 1 3 5 5 C 1.53000 * 109.46867 * 119.99719 * 2 1 3 6 6 C 1.52997 * 109.47329 * 60.00088 * 5 2 1 7 7 C 1.53000 * 109.47329 * 180.02562 * 6 5 2 8 8 C 1.50702 * 109.47173 * 180.02562 * 7 6 5 9 9 O 1.21288 * 120.00092 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99840 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99669 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46847 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.52289 * 54.92508 * 12 11 10 14 14 C 1.53048 * 109.49642 * 174.99847 * 12 11 10 15 15 C 1.53041 * 109.52638 * 181.32494 * 14 12 11 16 16 C 1.53188 * 109.31076 * 298.61726 * 15 14 12 17 17 N 1.46928 * 108.76962 * 54.65637 * 16 15 14 18 18 C 1.36935 * 120.62890 * 126.35748 * 17 16 15 19 19 H 1.08007 * 119.99883 * 208.02132 * 18 17 16 20 20 C 1.38804 * 120.00379 * 28.02504 * 18 17 16 21 21 N 1.31627 * 119.99900 * 17.52255 * 20 18 17 22 22 Si 1.86804 * 120.00442 * 197.52078 * 20 18 17 23 23 H 1.48504 * 109.46870 * 94.06524 * 22 20 18 24 24 H 1.48496 * 109.47350 * 214.06992 * 22 20 18 25 25 H 1.48496 * 109.46696 * 334.06866 * 22 20 18 26 26 C 1.46928 * 118.73554 * 306.38522 * 17 16 15 27 27 H 1.08996 * 109.47457 * 300.00540 * 1 2 3 28 28 H 1.09002 * 109.47410 * 60.00033 * 1 2 3 29 29 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47089 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47153 * 299.99752 * 3 2 1 32 32 H 1.08996 * 109.47380 * 59.99413 * 3 2 1 33 33 H 1.08996 * 109.46900 * 300.00017 * 4 2 1 34 34 H 1.08996 * 109.47410 * 60.00115 * 4 2 1 35 35 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47104 * 299.99837 * 5 2 1 37 37 H 1.09000 * 109.47049 * 180.02562 * 5 2 1 38 38 H 1.09004 * 109.47232 * 59.99827 * 6 5 2 39 39 H 1.09000 * 109.47011 * 299.99970 * 6 5 2 40 40 H 1.08996 * 109.46871 * 60.00012 * 7 6 5 41 41 H 1.09000 * 109.47049 * 299.99946 * 7 6 5 42 42 H 0.96999 * 120.00153 * 359.97438 * 10 8 7 43 43 H 1.09004 * 109.47429 * 59.99662 * 11 10 8 44 44 H 1.09000 * 109.47141 * 299.99604 * 11 10 8 45 45 H 1.09000 * 109.46031 * 301.33792 * 14 12 11 46 46 H 1.09006 * 109.45707 * 61.31409 * 14 12 11 47 47 H 1.09002 * 109.49496 * 58.58235 * 15 14 12 48 48 H 1.08996 * 109.49872 * 178.67721 * 15 14 12 49 49 H 1.09000 * 109.60114 * 294.86441 * 16 15 14 50 50 H 1.09002 * 109.69796 * 174.50621 * 16 15 14 51 51 H 0.96999 * 119.99791 * 179.97438 * 21 20 18 52 52 H 1.09004 * 109.58088 * 293.81594 * 26 17 16 53 53 H 1.09000 * 109.69795 * 173.46555 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 6 2.0394 -2.8847 2.4990 8 6 1.5375 -4.3057 2.4987 9 8 0.8406 -4.7026 1.5889 10 7 1.8623 -5.1352 3.5101 11 6 1.3740 -6.5165 3.5101 12 6 1.8835 -7.2375 4.7596 13 1 1.5964 -6.6744 5.6477 14 6 1.2736 -8.6397 4.8247 15 6 1.7569 -9.3494 6.0915 16 6 3.2818 -9.4874 6.0444 17 7 3.8706 -8.1575 5.8363 18 6 4.8302 -7.6784 6.6877 19 1 4.9379 -6.6139 6.8358 20 6 5.6645 -8.5606 7.3602 21 7 5.7816 -9.8034 6.9430 22 14 6.6213 -7.9840 8.8575 23 1 5.8516 -8.2985 10.0880 24 1 7.9335 -8.6775 8.9036 25 1 6.8390 -6.5177 8.7711 26 6 3.4099 -7.3513 4.6977 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.6766 -0.2073 2.1393 37 1 3.1299 -0.7208 1.2496 38 1 1.8933 -2.6776 0.3594 39 1 0.4399 -2.1637 1.2494 40 1 1.6756 -2.3707 3.3887 41 1 3.1294 -2.8847 2.4995 42 1 2.4194 -4.8177 4.2379 43 1 1.7380 -7.0306 2.6205 44 1 0.2840 -6.5165 3.5092 45 1 0.1865 -8.5623 4.8441 46 1 1.5815 -9.2106 3.9487 47 1 1.4710 -8.7662 6.9668 48 1 1.3038 -10.3391 6.1494 49 1 3.5642 -10.1449 5.2222 50 1 3.6423 -9.9035 6.9852 51 1 6.3649 -10.4198 7.4128 52 1 3.7028 -7.8346 3.7655 53 1 3.8529 -6.3567 4.7485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359421392.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:53 Heat of formation + Delta-G solvation = -80.544606 kcal Electronic energy + Delta-G solvation = -26116.191759 eV Core-core repulsion = 22599.789729 eV Total energy + Delta-G solvation = -3516.402029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86109 -39.43550 -38.81216 -36.23876 -34.65451 -33.98042 -32.30215 -31.89495 -28.57999 -28.11745 -28.06963 -27.24137 -26.34471 -23.86069 -23.22861 -22.31006 -21.31158 -20.52016 -19.49747 -18.68067 -17.78968 -16.98867 -16.88418 -16.77424 -16.09354 -15.72599 -15.56486 -15.35938 -15.07627 -14.95191 -14.69604 -14.54821 -14.45738 -14.02569 -13.75313 -13.65457 -13.35539 -13.08404 -13.00546 -12.88140 -12.65743 -12.53352 -12.50248 -12.48469 -12.43938 -12.25283 -11.94999 -11.82487 -11.70392 -11.58598 -11.39182 -11.33135 -11.27863 -11.22597 -11.10349 -10.72372 -10.53214 -10.02102 -8.68150 -7.86532 -5.32415 1.47721 1.49275 1.58098 1.71605 2.31237 2.51587 3.28113 3.59977 3.78315 3.84819 3.96458 3.99518 4.01530 4.04311 4.08994 4.22982 4.31744 4.40273 4.57778 4.59935 4.67575 4.70059 4.72381 4.76352 4.82895 4.87161 4.88925 4.90330 4.92637 4.97478 5.00664 5.01630 5.10180 5.12152 5.14048 5.23856 5.26497 5.26955 5.33150 5.38015 5.40796 5.49479 5.52170 5.57667 5.59654 5.64036 5.67216 5.77844 6.39252 6.61769 7.15046 7.31043 7.86412 8.38855 9.19884 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.002388 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.835788 B =11720.870467 C =12874.131325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.104 4.104 6 C -0.102 4.102 7 C -0.136 4.136 8 C 0.506 3.494 9 O -0.590 6.590 10 N -0.722 5.722 11 C 0.137 3.863 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.610 5.610 18 C -0.259 4.259 19 H 0.072 0.928 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.264 1.264 26 C 0.153 3.847 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.412 0.588 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.068 0.932 49 H -0.009 1.009 50 H 0.051 0.949 51 H 0.249 0.751 52 H 0.003 0.997 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 19.119 -9.968 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.142 4.142 6 C -0.140 4.140 7 C -0.176 4.176 8 C 0.294 3.706 9 O -0.471 6.471 10 N -0.374 5.374 11 C 0.013 3.987 12 C -0.119 4.119 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.090 0.910 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.214 1.214 24 H -0.226 1.226 25 H -0.188 1.188 26 C 0.027 3.973 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.248 0.752 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.010 0.990 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.021 0.979 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.679 18.725 -10.546 23.997 hybrid contribution 1.090 -0.454 0.984 1.537 sum -9.589 18.271 -9.562 22.742 Atomic orbital electron populations 1.21929 0.94828 1.01505 1.01835 1.20558 0.95617 0.95783 0.95217 1.21847 1.01055 0.94738 1.01957 1.21939 1.01002 1.00064 0.97216 1.21635 1.00887 0.93903 0.97756 1.21400 1.00871 0.95395 0.96324 1.21761 1.03630 0.90100 1.02074 1.21405 0.79321 0.89070 0.80757 1.90664 1.40313 1.78659 1.37454 1.46114 1.53511 1.12116 1.25627 1.21215 0.98664 0.81404 0.97467 1.21705 0.96429 0.96743 0.97068 0.90419 1.21350 1.00130 0.94591 0.97552 1.21994 0.96762 1.00147 0.97965 1.20631 0.90277 0.85879 0.98550 1.44323 1.43664 1.16455 1.28830 1.19557 1.08864 0.92309 1.18223 0.91018 1.25833 0.99013 0.96769 1.03320 1.70212 1.41110 1.06213 1.40806 0.85254 0.77230 0.78193 0.79792 1.21409 1.22554 1.18825 1.21014 0.92652 0.94826 0.88770 0.92282 0.92644 0.93271 0.92479 0.92574 0.92265 0.93327 0.92592 0.92551 0.90919 0.91290 0.92667 0.92254 0.86659 0.87259 0.75178 0.93006 0.91339 0.90239 0.92836 0.92732 0.91310 0.99050 0.93048 0.94233 0.97896 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.12 71.98 0.58 -1.42 16 2 C -0.07 -0.96 0.80 -52.18 -0.04 -1.00 16 3 C -0.14 -1.55 8.47 71.98 0.61 -0.94 16 4 C -0.14 -2.13 8.12 71.98 0.58 -1.55 16 5 C -0.10 -1.39 4.27 30.59 0.13 -1.26 16 6 C -0.10 -1.82 3.80 30.59 0.12 -1.70 16 7 C -0.14 -2.29 5.70 29.85 0.17 -2.12 16 8 C 0.51 12.81 7.83 87.66 0.69 13.50 16 9 O -0.59 -19.81 15.98 -3.05 -0.05 -19.85 16 10 N -0.72 -17.49 5.33 -463.04 -2.47 -19.96 16 11 C 0.14 3.76 5.07 86.38 0.44 4.20 16 12 C -0.10 -3.04 2.37 -10.72 -0.03 -3.07 16 13 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 14 C -0.10 -3.02 5.17 30.62 0.16 -2.86 16 15 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 16 C 0.17 8.26 5.31 86.36 0.46 8.72 16 17 N -0.61 -29.81 2.99 -699.11 -2.09 -31.91 16 18 C -0.26 -13.83 9.58 84.03 0.81 -13.03 16 19 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 20 C -0.05 -2.99 4.90 84.86 0.42 -2.57 16 21 N -0.94 -55.44 11.22 21.65 0.24 -55.20 16 22 Si 0.97 44.04 29.59 68.60 2.03 46.07 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 C 0.15 5.99 5.60 86.36 0.48 6.48 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.81 6.43 -2.39 -0.02 0.79 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.84 6.43 -2.39 -0.02 0.82 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 1.17 6.39 -2.39 -0.02 1.16 16 39 H 0.06 1.20 6.39 -2.39 -0.02 1.19 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.41 8.53 7.71 -92.71 -0.71 7.81 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 50 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 51 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 52 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 53 H 0.06 2.17 7.15 -2.39 -0.02 2.15 16 Total: -1.00 -67.16 403.22 3.56 -63.61 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.13 Total: 20.37 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.76 Total: -3.13 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.32 Total: -107.06 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.16 3.56 -63.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421392.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.938 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds