Wall clock time and date at job start Fri Apr 10 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46769 * 2 1 4 4 C 1.53006 * 109.46662 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47085 * 299.99709 * 4 3 2 6 6 C 1.52996 * 109.47115 * 60.00002 * 4 3 2 7 7 C 1.53002 * 109.47383 * 59.99889 * 6 4 3 8 8 C 1.50706 * 109.46612 * 180.02562 * 4 3 2 9 9 O 1.21276 * 120.00159 * 359.97438 * 8 4 3 10 10 N 1.34774 * 119.99636 * 180.02562 * 8 4 3 11 11 C 1.46496 * 120.00026 * 179.97438 * 10 8 4 12 12 C 1.52997 * 109.47443 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.49621 * 54.93688 * 12 11 10 14 14 C 1.53035 * 109.50051 * 175.00014 * 12 11 10 15 15 C 1.53043 * 109.54104 * 181.31917 * 14 12 11 16 16 C 1.53193 * 109.31259 * 298.63894 * 15 14 12 17 17 N 1.46922 * 108.77739 * 54.63202 * 16 15 14 18 18 C 1.36934 * 120.63254 * 126.41433 * 17 16 15 19 19 H 1.07999 * 119.99980 * 332.66783 * 18 17 16 20 20 C 1.38815 * 120.00205 * 152.66550 * 18 17 16 21 21 N 1.31613 * 119.99823 * 159.73636 * 20 18 17 22 22 Si 1.86800 * 119.99718 * 339.73586 * 20 18 17 23 23 H 1.48497 * 109.47128 * 94.91235 * 22 20 18 24 24 H 1.48501 * 109.47100 * 214.90958 * 22 20 18 25 25 H 1.48496 * 109.47365 * 334.91031 * 22 20 18 26 26 C 1.46924 * 118.73761 * 306.39125 * 17 16 15 27 27 H 1.09007 * 109.47452 * 60.00281 * 1 2 3 28 28 H 1.09003 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47350 * 300.00305 * 1 2 3 30 30 H 1.08998 * 109.47350 * 239.99694 * 2 1 3 31 31 H 1.09001 * 109.47027 * 119.99618 * 2 1 3 32 32 H 1.08998 * 109.47434 * 59.99746 * 3 2 1 33 33 H 1.09001 * 109.47034 * 299.99614 * 3 2 1 34 34 H 1.08998 * 109.47058 * 300.00229 * 5 4 3 35 35 H 1.09001 * 109.46867 * 60.00645 * 5 4 3 36 36 H 1.09001 * 109.46618 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47152 * 179.97438 * 6 4 3 38 38 H 1.09001 * 109.47541 * 299.99785 * 6 4 3 39 39 H 1.08998 * 109.47058 * 179.97438 * 7 6 4 40 40 H 1.08999 * 109.47083 * 299.99643 * 7 6 4 41 41 H 1.09003 * 109.47282 * 59.99820 * 7 6 4 42 42 H 0.97002 * 119.99948 * 0.27156 * 10 8 4 43 43 H 1.08996 * 109.47612 * 299.99998 * 11 10 8 44 44 H 1.09007 * 109.46884 * 59.99738 * 11 10 8 45 45 H 1.09001 * 109.45966 * 301.33845 * 14 12 11 46 46 H 1.09005 * 109.46205 * 61.31416 * 14 12 11 47 47 H 1.09004 * 109.49521 * 58.58750 * 15 14 12 48 48 H 1.09004 * 109.50141 * 178.64792 * 15 14 12 49 49 H 1.09001 * 109.58482 * 174.42382 * 16 15 14 50 50 H 1.08998 * 109.58091 * 294.84277 * 16 15 14 51 51 H 0.97000 * 119.99784 * 179.97438 * 21 20 18 52 52 H 1.08998 * 109.59238 * 293.82012 * 26 17 16 53 53 H 1.09006 * 109.58545 * 173.39338 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0794 0.7215 1.2503 6 6 4.0804 0.7211 -1.2482 7 6 3.5710 1.4421 -2.4979 8 6 4.0722 2.8634 0.0013 9 8 3.2841 3.7852 0.0008 10 7 5.3972 3.1097 0.0014 11 6 5.8856 4.4909 0.0014 12 6 7.4155 4.4910 0.0022 13 1 7.7798 3.9006 -0.8386 14 6 7.9264 5.9281 -0.1235 15 6 9.4565 5.9265 -0.1559 16 6 9.9903 5.3362 1.1531 17 7 9.3896 4.0106 1.3538 18 6 10.1784 2.9134 1.5752 19 1 11.1859 2.8855 1.1872 20 6 9.6832 1.8369 2.2984 21 7 10.2469 0.6530 2.1852 22 14 8.2168 2.0689 3.4321 23 1 6.9710 1.7045 2.7108 24 1 8.3708 1.1980 4.6251 25 1 8.1428 3.4884 3.8617 26 6 7.9264 3.8845 1.3130 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.7157 1.2355 2.1400 35 1 3.7161 -0.3062 1.2502 36 1 5.1694 0.7219 1.2509 37 1 5.1705 0.7215 -1.2480 38 1 3.7172 -0.3066 -1.2483 39 1 3.9351 0.9284 -3.3876 40 1 2.4810 1.4421 -2.4984 41 1 3.9343 2.4698 -2.4979 42 1 6.0276 2.3724 -0.0029 43 1 5.5224 5.0048 -0.8885 44 1 5.5221 5.0047 0.8914 45 1 7.5442 6.3702 -1.0436 46 1 7.5821 6.5119 0.7303 47 1 9.8019 5.3224 -0.9949 48 1 9.8191 6.9481 -0.2695 49 1 11.0747 5.2412 1.0956 50 1 9.7222 5.9886 1.9841 51 1 9.9010 -0.0991 2.6908 52 1 7.4898 4.4184 2.1571 53 1 7.6488 2.8315 1.3610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359584136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:57 Heat of formation + Delta-G solvation = -52.573248 kcal Electronic energy + Delta-G solvation = -28056.199314 eV Core-core repulsion = 24541.010214 eV Total energy + Delta-G solvation = -3515.189100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40854 -38.30590 -36.88385 -34.81147 -33.32157 -32.88622 -31.10671 -30.63998 -30.34028 -26.73184 -25.95791 -25.32104 -23.92649 -23.13622 -22.45029 -21.06120 -20.76613 -19.49438 -18.60963 -16.93993 -16.59520 -16.01352 -15.80500 -15.47780 -15.19565 -14.38326 -14.36190 -14.06846 -13.89631 -13.65414 -13.42218 -13.30231 -13.15073 -13.11255 -12.81496 -12.50514 -12.29483 -12.18437 -12.05326 -11.92169 -11.79335 -11.61729 -11.47984 -11.31212 -11.00397 -10.94512 -10.81832 -10.62795 -10.55601 -10.47428 -10.40101 -10.14664 -9.94139 -9.72226 -9.52503 -9.40598 -8.83539 -8.66640 -7.01641 -6.00213 -3.35821 2.82532 3.23083 3.36692 3.44072 3.47326 4.46350 4.53192 4.59681 4.73153 4.81115 4.95047 4.99314 5.11441 5.15715 5.20181 5.24296 5.30099 5.35022 5.41932 5.48743 5.54125 5.58236 5.60208 5.66183 5.74768 5.78381 5.80791 5.85232 5.86919 5.93568 5.96590 6.03009 6.07282 6.08822 6.09801 6.11747 6.16531 6.26634 6.28915 6.32479 6.40592 6.53510 6.54425 6.59451 6.66775 6.73544 6.94756 7.70212 7.91259 8.27971 8.40041 8.89382 9.66836 10.05542 11.15619 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004446 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.451440 B = 6296.663287 C = 7374.579051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.080 4.080 5 C -0.148 4.148 6 C -0.115 4.115 7 C -0.155 4.155 8 C 0.525 3.475 9 O -0.549 6.549 10 N -0.724 5.724 11 C 0.126 3.874 12 C -0.119 4.119 13 H 0.079 0.921 14 C -0.101 4.101 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.907 5.907 22 Si 0.879 3.121 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.135 3.865 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.404 0.596 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.022 0.978 51 H 0.262 0.738 52 H 0.026 0.974 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.168 1.539 -6.950 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.083 4.083 5 C -0.205 4.205 6 C -0.152 4.152 7 C -0.213 4.213 8 C 0.311 3.689 9 O -0.427 6.427 10 N -0.376 5.376 11 C 0.002 3.998 12 C -0.140 4.140 13 H 0.097 0.903 14 C -0.139 4.139 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.387 4.387 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.709 3.291 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.009 3.991 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.239 0.761 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.072 0.928 52 H 0.043 0.957 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.668 2.043 -6.875 16.328 hybrid contribution -0.427 -0.317 0.774 0.939 sum -15.095 1.726 -6.101 16.373 Atomic orbital electron populations 1.21757 0.95976 1.01312 1.01808 1.21685 0.95701 0.96913 1.02328 1.21453 0.91859 0.96575 1.03294 1.20877 0.97489 0.92445 0.97475 1.21973 1.01915 1.00705 0.95936 1.21649 1.01070 0.99684 0.92837 1.21852 1.01539 1.00631 0.97230 1.20473 0.82171 0.91023 0.75204 1.90649 1.55446 1.46356 1.50212 1.46124 1.07171 1.09476 1.74781 1.21425 0.94265 0.82469 1.01663 1.21971 0.92199 0.98145 1.01651 0.90253 1.21343 0.96412 0.95252 1.00880 1.21991 0.95090 0.99840 1.00429 1.20958 0.97158 0.86338 0.93510 1.44344 1.00545 1.04293 1.83742 1.18955 0.98516 0.92660 1.28581 0.89627 1.25265 0.97943 0.95640 0.98656 1.69832 1.43044 0.99372 1.42802 0.87026 0.82630 0.77790 0.81632 1.21443 1.23206 1.19677 1.21351 0.85134 0.99221 0.93345 0.92845 0.92922 0.92819 0.91628 0.91642 0.91479 0.90997 0.92135 0.91012 0.91671 0.91278 0.90447 0.92478 0.92175 0.92750 0.76082 0.91827 0.91837 0.92795 0.92370 0.91959 0.92590 0.91921 0.96024 0.92784 0.95651 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.19 5.23 -26.73 -0.14 -1.33 16 3 C -0.09 -1.09 3.21 -26.73 -0.09 -1.17 16 4 C -0.08 -1.00 0.43 -155.66 -0.07 -1.07 16 5 C -0.15 -1.88 8.02 37.16 0.30 -1.58 16 6 C -0.11 -1.25 4.54 -26.73 -0.12 -1.37 16 7 C -0.16 -1.66 9.31 37.16 0.35 -1.31 16 8 C 0.53 8.17 5.22 -10.98 -0.06 8.11 16 9 O -0.55 -10.06 15.98 5.56 0.09 -9.98 16 10 N -0.72 -11.24 5.11 -60.30 -0.31 -11.55 16 11 C 0.13 1.96 5.07 -4.05 -0.02 1.94 16 12 C -0.12 -1.98 2.37 -90.50 -0.21 -2.20 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.10 -1.50 5.17 -26.69 -0.14 -1.64 16 15 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 16 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 17 N -0.61 -13.95 2.77 -172.32 -0.48 -14.42 16 18 C -0.26 -7.03 10.04 -15.06 -0.15 -7.18 16 19 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 20 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 21 N -0.91 -26.94 13.97 55.49 0.78 -26.16 16 22 Si 0.88 21.78 24.35 -169.99 -4.14 17.64 16 23 H -0.29 -6.60 6.70 56.52 0.38 -6.22 16 24 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.27 -6.79 6.46 56.52 0.37 -6.43 16 26 C 0.14 2.81 3.28 -3.71 -0.01 2.80 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 31 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 32 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.07 0.87 6.39 -51.93 -0.33 0.54 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.76 6.43 -51.93 -0.33 0.42 16 36 H 0.06 0.92 7.57 -51.93 -0.39 0.53 16 37 H 0.07 0.79 7.56 -51.93 -0.39 0.39 16 38 H 0.08 0.73 6.43 -51.93 -0.33 0.39 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 41 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 42 H 0.40 6.23 6.55 -40.82 -0.27 5.96 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 52 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 53 H 0.07 1.53 3.73 -51.93 -0.19 1.34 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -30.65 388.47 -8.41 -39.06 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -9.93 Total: 5.37 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.27 Total: -5.81 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.01 Total: -52.14 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.65 -8.41 -39.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.511 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds