Wall clock time and date at job start Fri Apr 10 2020 22:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46769 * 2 1 4 4 C 1.53006 * 109.46662 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47085 * 299.99709 * 4 3 2 6 6 C 1.52996 * 109.47115 * 60.00002 * 4 3 2 7 7 C 1.53002 * 109.47383 * 59.99889 * 6 4 3 8 8 C 1.50706 * 109.46612 * 180.02562 * 4 3 2 9 9 O 1.21276 * 120.00159 * 359.97438 * 8 4 3 10 10 N 1.34774 * 119.99636 * 180.02562 * 8 4 3 11 11 C 1.46496 * 120.00026 * 179.97438 * 10 8 4 12 12 C 1.52997 * 109.47443 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.49621 * 54.93688 * 12 11 10 14 14 C 1.53035 * 109.50051 * 175.00014 * 12 11 10 15 15 C 1.53043 * 109.54104 * 181.31917 * 14 12 11 16 16 C 1.53193 * 109.31259 * 298.63894 * 15 14 12 17 17 N 1.46922 * 108.77739 * 54.63202 * 16 15 14 18 18 C 1.36934 * 120.63254 * 126.41433 * 17 16 15 19 19 H 1.07999 * 119.99980 * 332.66783 * 18 17 16 20 20 C 1.38815 * 120.00205 * 152.66550 * 18 17 16 21 21 N 1.31613 * 119.99823 * 159.73636 * 20 18 17 22 22 Si 1.86800 * 119.99718 * 339.73586 * 20 18 17 23 23 H 1.48497 * 109.47128 * 94.91235 * 22 20 18 24 24 H 1.48501 * 109.47100 * 214.90958 * 22 20 18 25 25 H 1.48496 * 109.47365 * 334.91031 * 22 20 18 26 26 C 1.46924 * 118.73761 * 306.39125 * 17 16 15 27 27 H 1.09007 * 109.47452 * 60.00281 * 1 2 3 28 28 H 1.09003 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47350 * 300.00305 * 1 2 3 30 30 H 1.08998 * 109.47350 * 239.99694 * 2 1 3 31 31 H 1.09001 * 109.47027 * 119.99618 * 2 1 3 32 32 H 1.08998 * 109.47434 * 59.99746 * 3 2 1 33 33 H 1.09001 * 109.47034 * 299.99614 * 3 2 1 34 34 H 1.08998 * 109.47058 * 300.00229 * 5 4 3 35 35 H 1.09001 * 109.46867 * 60.00645 * 5 4 3 36 36 H 1.09001 * 109.46618 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47152 * 179.97438 * 6 4 3 38 38 H 1.09001 * 109.47541 * 299.99785 * 6 4 3 39 39 H 1.08998 * 109.47058 * 179.97438 * 7 6 4 40 40 H 1.08999 * 109.47083 * 299.99643 * 7 6 4 41 41 H 1.09003 * 109.47282 * 59.99820 * 7 6 4 42 42 H 0.97002 * 119.99948 * 0.27156 * 10 8 4 43 43 H 1.08996 * 109.47612 * 299.99998 * 11 10 8 44 44 H 1.09007 * 109.46884 * 59.99738 * 11 10 8 45 45 H 1.09001 * 109.45966 * 301.33845 * 14 12 11 46 46 H 1.09005 * 109.46205 * 61.31416 * 14 12 11 47 47 H 1.09004 * 109.49521 * 58.58750 * 15 14 12 48 48 H 1.09004 * 109.50141 * 178.64792 * 15 14 12 49 49 H 1.09001 * 109.58482 * 174.42382 * 16 15 14 50 50 H 1.08998 * 109.58091 * 294.84277 * 16 15 14 51 51 H 0.97000 * 119.99784 * 179.97438 * 21 20 18 52 52 H 1.08998 * 109.59238 * 293.82012 * 26 17 16 53 53 H 1.09006 * 109.58545 * 173.39338 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0794 0.7215 1.2503 6 6 4.0804 0.7211 -1.2482 7 6 3.5710 1.4421 -2.4979 8 6 4.0722 2.8634 0.0013 9 8 3.2841 3.7852 0.0008 10 7 5.3972 3.1097 0.0014 11 6 5.8856 4.4909 0.0014 12 6 7.4155 4.4910 0.0022 13 1 7.7798 3.9006 -0.8386 14 6 7.9264 5.9281 -0.1235 15 6 9.4565 5.9265 -0.1559 16 6 9.9903 5.3362 1.1531 17 7 9.3896 4.0106 1.3538 18 6 10.1784 2.9134 1.5752 19 1 11.1859 2.8855 1.1872 20 6 9.6832 1.8369 2.2984 21 7 10.2469 0.6530 2.1852 22 14 8.2168 2.0689 3.4321 23 1 6.9710 1.7045 2.7108 24 1 8.3708 1.1980 4.6251 25 1 8.1428 3.4884 3.8617 26 6 7.9264 3.8845 1.3130 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.7157 1.2355 2.1400 35 1 3.7161 -0.3062 1.2502 36 1 5.1694 0.7219 1.2509 37 1 5.1705 0.7215 -1.2480 38 1 3.7172 -0.3066 -1.2483 39 1 3.9351 0.9284 -3.3876 40 1 2.4810 1.4421 -2.4984 41 1 3.9343 2.4698 -2.4979 42 1 6.0276 2.3724 -0.0029 43 1 5.5224 5.0048 -0.8885 44 1 5.5221 5.0047 0.8914 45 1 7.5442 6.3702 -1.0436 46 1 7.5821 6.5119 0.7303 47 1 9.8019 5.3224 -0.9949 48 1 9.8191 6.9481 -0.2695 49 1 11.0747 5.2412 1.0956 50 1 9.7222 5.9886 1.9841 51 1 9.9010 -0.0991 2.6908 52 1 7.4898 4.4184 2.1571 53 1 7.6488 2.8315 1.3610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359584136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:56 Heat of formation + Delta-G solvation = -70.698629 kcal Electronic energy + Delta-G solvation = -28056.985290 eV Core-core repulsion = 24541.010214 eV Total energy + Delta-G solvation = -3515.975076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56908 -39.76281 -37.98182 -36.24944 -34.88057 -33.90841 -32.80197 -32.05646 -31.38127 -27.65687 -27.32304 -27.09934 -24.97039 -24.20475 -23.85107 -22.45057 -21.89340 -20.94149 -19.71624 -18.83906 -17.81791 -17.25139 -17.22486 -16.70081 -16.35578 -15.93504 -15.54043 -15.46561 -15.18433 -14.97166 -14.75049 -14.55832 -14.47169 -14.16462 -13.95718 -13.93513 -13.58306 -13.37286 -13.33009 -13.09209 -13.02800 -12.76857 -12.66681 -12.55518 -12.21034 -12.14923 -12.09151 -11.82662 -11.81663 -11.71322 -11.58778 -11.45047 -11.34436 -11.28285 -11.23331 -10.68575 -10.61003 -10.11173 -8.93130 -8.17148 -5.48382 1.24288 1.39281 1.46082 1.60937 2.19281 2.37857 3.03473 3.31410 3.56023 3.60729 3.79689 3.82155 3.90791 3.95645 4.06524 4.20987 4.28401 4.30374 4.36876 4.44182 4.47286 4.50382 4.58761 4.62094 4.64901 4.70812 4.73980 4.76536 4.82170 4.87051 4.88932 4.96058 4.97878 5.07306 5.08549 5.11382 5.13770 5.18393 5.19488 5.21826 5.25105 5.28707 5.38271 5.42791 5.43836 5.56485 5.57635 5.86711 6.12783 6.46344 6.91405 7.16991 7.61927 8.03286 9.02631 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004446 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.451440 B = 6296.663287 C = 7374.579051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.076 4.076 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.152 4.152 8 C 0.522 3.478 9 O -0.579 6.579 10 N -0.726 5.726 11 C 0.132 3.868 12 C -0.105 4.105 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.124 4.124 16 C 0.137 3.863 17 N -0.620 5.620 18 C -0.249 4.249 19 H 0.054 0.946 20 C -0.025 4.025 21 N -0.952 5.952 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.314 1.314 25 H -0.274 1.274 26 C 0.134 3.866 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.404 0.596 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.054 0.946 50 H 0.030 0.970 51 H 0.262 0.738 52 H 0.021 0.979 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.021 2.127 -7.951 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.126 4.126 4 C -0.079 4.079 5 C -0.205 4.205 6 C -0.150 4.150 7 C -0.209 4.209 8 C 0.310 3.690 9 O -0.459 6.459 10 N -0.377 5.377 11 C 0.008 3.992 12 C -0.126 4.126 13 H 0.092 0.908 14 C -0.137 4.137 15 C -0.163 4.163 16 C 0.012 3.988 17 N -0.345 5.345 18 C -0.378 4.378 19 H 0.072 0.928 20 C -0.220 4.220 21 N -0.598 5.598 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.244 1.244 25 H -0.199 1.199 26 C 0.009 3.991 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.239 0.761 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.048 0.952 51 H 0.071 0.929 52 H 0.039 0.961 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.533 2.669 -7.896 18.515 hybrid contribution 0.234 -0.429 1.060 1.168 sum -16.300 2.239 -6.835 17.816 Atomic orbital electron populations 1.21757 0.95306 1.02114 1.01665 1.21668 0.96285 0.95145 1.03063 1.21405 0.91004 0.98074 1.02148 1.20918 0.98121 0.90579 0.98301 1.21987 1.00810 1.02103 0.95563 1.21678 1.00739 1.00636 0.91977 1.21825 1.01866 0.99481 0.97735 1.21035 0.81766 0.92071 0.74159 1.90628 1.56045 1.47591 1.51661 1.46203 1.07393 1.09524 1.74574 1.21360 0.93244 0.82687 1.01955 1.21789 0.92817 0.99224 0.98740 0.90778 1.21379 0.95680 0.93892 1.02729 1.21887 0.95622 1.01195 0.97590 1.21183 0.96875 0.84790 0.95910 1.44492 1.01309 1.04666 1.83997 1.18900 0.97786 0.93872 1.27291 0.92817 1.25764 1.00838 0.95342 1.00102 1.69943 1.45335 1.00209 1.44278 0.86095 0.80962 0.77049 0.79374 1.18957 1.24371 1.19931 1.21337 0.83832 0.98512 0.95452 0.92749 0.91629 0.93291 0.90439 0.91244 0.93161 0.91646 0.93061 0.88568 0.93278 0.91869 0.88244 0.91020 0.91618 0.94814 0.76055 0.90476 0.92503 0.89796 0.91718 0.92767 0.89265 0.92755 0.95165 0.92895 0.96127 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.49 16 2 C -0.12 -2.00 5.23 30.59 0.16 -1.84 16 3 C -0.09 -1.93 3.21 30.60 0.10 -1.83 16 4 C -0.08 -1.81 0.43 -52.92 -0.02 -1.83 16 5 C -0.15 -3.53 8.02 71.98 0.58 -2.96 16 6 C -0.11 -2.24 4.54 30.59 0.14 -2.11 16 7 C -0.15 -2.97 9.31 71.98 0.67 -2.30 16 8 C 0.52 15.83 5.22 87.66 0.46 16.29 16 9 O -0.58 -20.93 15.98 -3.02 -0.05 -20.98 16 10 N -0.73 -21.88 5.11 -463.07 -2.37 -24.24 16 11 C 0.13 3.88 5.07 86.38 0.44 4.32 16 12 C -0.11 -3.32 2.37 -10.72 -0.03 -3.35 16 13 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.10 -2.63 5.17 30.62 0.16 -2.47 16 15 C -0.12 -3.55 6.08 30.67 0.19 -3.37 16 16 C 0.14 5.10 6.52 86.36 0.56 5.66 16 17 N -0.62 -28.40 2.77 -699.10 -1.94 -30.34 16 18 C -0.25 -13.81 10.04 84.03 0.84 -12.96 16 19 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 20 C -0.03 -1.44 5.24 84.86 0.44 -0.99 16 21 N -0.95 -58.00 13.97 21.65 0.30 -57.70 16 22 Si 0.94 45.69 24.35 68.60 1.67 47.36 16 23 H -0.26 -11.69 6.70 99.48 0.67 -11.03 16 24 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 25 H -0.27 -13.34 6.46 99.48 0.64 -12.70 16 26 C 0.13 5.44 3.28 86.36 0.28 5.72 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 31 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 32 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.06 1.51 6.39 -2.39 -0.02 1.49 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.81 6.43 -2.39 -0.02 1.79 16 36 H 0.05 1.33 7.57 -2.39 -0.02 1.31 16 37 H 0.06 1.34 7.56 -2.39 -0.02 1.33 16 38 H 0.10 1.56 6.43 -2.39 -0.02 1.54 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.20 6.43 -2.39 -0.02 1.19 16 41 H 0.03 0.79 7.22 -2.39 -0.02 0.77 16 42 H 0.40 12.20 6.55 -92.71 -0.61 11.59 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 50 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 52 H 0.02 0.87 6.98 -2.39 -0.02 0.85 16 53 H 0.05 2.24 3.73 -2.38 -0.01 2.23 16 Total: -1.00 -67.43 388.47 3.46 -63.97 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.15 Total: 27.44 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.68 Total: -5.50 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.00 Total: -112.28 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -67.43 3.46 -63.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.727 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds