Wall clock time and date at job start Fri Apr 10 2020 22:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 C 1.52997 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47500 * 300.00481 * 4 3 2 6 6 C 1.53002 * 109.46903 * 60.00543 * 4 3 2 7 7 C 1.52999 * 109.47193 * 60.00201 * 6 4 3 8 8 C 1.50708 * 109.47119 * 180.02562 * 4 3 2 9 9 O 1.21278 * 119.99325 * 0.02562 * 8 4 3 10 10 N 1.34777 * 120.00121 * 180.02562 * 8 4 3 11 11 C 1.46497 * 119.99641 * 180.02562 * 10 8 4 12 12 C 1.53003 * 109.46886 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.49128 * 304.93116 * 12 11 10 14 14 C 1.53037 * 109.52571 * 184.85614 * 12 11 10 15 15 C 1.53042 * 109.54229 * 178.66263 * 14 12 11 16 16 C 1.53197 * 109.30694 * 61.36053 * 15 14 12 17 17 N 1.46956 * 108.89000 * 305.44384 * 16 15 14 18 18 C 1.36933 * 120.65426 * 233.52786 * 17 16 15 19 19 H 1.07997 * 119.99962 * 151.73490 * 18 17 16 20 20 C 1.38810 * 120.00381 * 331.73916 * 18 17 16 21 21 N 1.31626 * 119.99638 * 343.18102 * 20 18 17 22 22 Si 1.86793 * 120.00463 * 163.17922 * 20 18 17 23 23 H 1.48508 * 109.46924 * 60.00059 * 22 20 18 24 24 H 1.48497 * 109.47413 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47362 * 300.00284 * 22 20 18 26 26 C 1.46927 * 118.71486 * 53.36372 * 17 16 15 27 27 H 1.09000 * 109.46573 * 299.99728 * 1 2 3 28 28 H 1.09002 * 109.46972 * 59.99469 * 1 2 3 29 29 H 1.09001 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46955 * 240.00296 * 2 1 3 31 31 H 1.09003 * 109.47466 * 120.00714 * 2 1 3 32 32 H 1.08997 * 109.46579 * 60.00741 * 3 2 1 33 33 H 1.08996 * 109.47097 * 300.00140 * 3 2 1 34 34 H 1.09000 * 109.47102 * 299.99690 * 5 4 3 35 35 H 1.09001 * 109.47236 * 59.99976 * 5 4 3 36 36 H 1.09005 * 109.47211 * 180.02562 * 5 4 3 37 37 H 1.09005 * 109.46718 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47514 * 299.99238 * 6 4 3 39 39 H 1.09000 * 109.47202 * 180.02562 * 7 6 4 40 40 H 1.09005 * 109.46743 * 299.99316 * 7 6 4 41 41 H 1.08991 * 109.47451 * 59.99741 * 7 6 4 42 42 H 0.96996 * 119.99728 * 0.02562 * 10 8 4 43 43 H 1.08993 * 109.47465 * 60.00036 * 11 10 8 44 44 H 1.08996 * 109.47013 * 299.99801 * 11 10 8 45 45 H 1.09003 * 109.45532 * 298.68625 * 14 12 11 46 46 H 1.09000 * 109.45893 * 58.65521 * 14 12 11 47 47 H 1.08994 * 109.49956 * 181.31657 * 15 14 12 48 48 H 1.09001 * 109.49741 * 301.41488 * 15 14 12 49 49 H 1.09000 * 109.58579 * 65.15691 * 16 15 14 50 50 H 1.08999 * 109.58050 * 185.57602 * 16 15 14 51 51 H 0.97000 * 119.99586 * 180.02562 * 21 20 18 52 52 H 1.09000 * 109.58803 * 186.78032 * 26 17 16 53 53 H 1.08993 * 109.59297 * 66.49258 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0795 0.7212 1.2501 6 6 4.0804 0.7210 -1.2484 7 6 3.5710 1.4422 -2.4979 8 6 4.0725 2.8632 0.0013 9 8 3.2843 3.7850 0.0017 10 7 5.3975 3.1095 0.0014 11 6 5.8858 4.4907 0.0026 12 6 7.4159 4.4906 0.0018 13 1 7.7800 3.9014 0.8434 14 6 7.9275 5.9277 0.1251 15 6 9.4575 5.9253 0.1580 16 6 9.9913 5.3325 -1.1499 17 7 9.3898 4.0070 -1.3519 18 6 10.1777 2.9092 -1.5736 19 1 9.8340 1.9292 -1.2774 20 6 11.4183 3.0559 -2.1788 21 7 11.7048 4.1618 -2.8326 22 14 12.6810 1.6842 -2.0655 23 1 12.1270 0.4497 -2.6775 24 1 13.9138 2.0850 -2.7900 25 1 13.0058 1.4269 -0.6395 26 6 7.9266 3.8816 -1.3078 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.7159 1.2352 2.1399 35 1 3.7162 -0.3064 1.2500 36 1 5.1696 0.7216 1.2507 37 1 5.1705 0.7214 -1.2481 38 1 3.7172 -0.3067 -1.2485 39 1 3.9343 0.9281 -3.3877 40 1 2.4810 1.4422 -2.4983 41 1 3.9344 2.4698 -2.4978 42 1 6.0278 2.3722 0.0007 43 1 5.5226 5.0037 0.8930 44 1 5.5225 5.0052 -0.8869 45 1 7.5834 6.5101 -0.7296 46 1 7.5454 6.3715 1.0445 47 1 9.8206 6.9470 0.2693 48 1 9.8025 5.3225 0.9981 49 1 9.7237 5.9835 -1.9822 50 1 11.0756 5.2370 -1.0920 51 1 12.5715 4.2642 -3.2559 52 1 7.6484 2.8287 -1.3540 53 1 7.4886 4.4127 -2.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359584137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:00 Heat of formation + Delta-G solvation = -58.118508 kcal Electronic energy + Delta-G solvation = -27459.556593 eV Core-core repulsion = 23944.127032 eV Total energy + Delta-G solvation = -3515.429561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44560 -38.03591 -36.87904 -34.80464 -33.34569 -32.75196 -30.73422 -30.45132 -30.11891 -26.79030 -25.76751 -25.27841 -23.86576 -23.11984 -22.11694 -21.15366 -20.71985 -19.27953 -18.56236 -16.88934 -16.45076 -16.02705 -15.79337 -15.32570 -14.86168 -14.59150 -14.32214 -13.99775 -13.81185 -13.53191 -13.43741 -13.21298 -13.18572 -12.78635 -12.51611 -12.35335 -12.26844 -12.16830 -12.10707 -11.95208 -11.85566 -11.34921 -11.28578 -11.05525 -11.02276 -10.99321 -10.72301 -10.57534 -10.50885 -10.45670 -10.25321 -10.18765 -9.94896 -9.70734 -9.43657 -9.40822 -8.85011 -8.48290 -6.68785 -5.81018 -3.24173 2.78843 3.32843 3.35589 3.41996 3.42499 4.45619 4.46517 4.54461 4.66947 4.89791 4.93446 5.04286 5.11011 5.19561 5.27395 5.30000 5.43416 5.44393 5.46283 5.46975 5.52302 5.60270 5.61493 5.65267 5.73836 5.82170 5.83408 5.85177 5.92509 5.95343 5.99287 6.02789 6.05944 6.13848 6.18066 6.23843 6.33185 6.36774 6.37326 6.56880 6.58384 6.70200 6.77503 6.85105 6.96007 7.38537 7.65064 7.67616 7.76014 8.37199 8.42575 9.18720 9.82251 10.39483 11.27343 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003308 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.287034 B = 8461.996262 C = 9492.419264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.095 4.095 4 C -0.080 4.080 5 C -0.144 4.144 6 C -0.114 4.114 7 C -0.157 4.157 8 C 0.523 3.477 9 O -0.548 6.548 10 N -0.722 5.722 11 C 0.127 3.873 12 C -0.117 4.117 13 H 0.072 0.928 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.156 3.844 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.401 0.599 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.017 0.983 50 H 0.086 0.914 51 H 0.254 0.746 52 H 0.049 0.951 53 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 -6.083 6.711 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.133 4.133 4 C -0.083 4.083 5 C -0.201 4.201 6 C -0.151 4.151 7 C -0.214 4.214 8 C 0.309 3.691 9 O -0.425 6.425 10 N -0.373 5.373 11 C 0.003 3.997 12 C -0.138 4.138 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.029 3.971 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.237 0.763 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.035 0.965 50 H 0.104 0.896 51 H 0.064 0.936 52 H 0.067 0.933 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.036 -5.367 6.593 19.040 hybrid contribution 1.102 -0.921 0.008 1.436 sum -15.934 -6.288 6.601 18.358 Atomic orbital electron populations 1.21761 0.95974 1.01322 1.01865 1.21681 0.95738 0.96911 1.02231 1.21458 0.91926 0.96548 1.03377 1.20874 0.97497 0.92511 0.97387 1.21920 1.01386 1.00740 0.96064 1.21644 1.01040 0.99537 0.92919 1.21855 1.01404 1.00881 0.97280 1.20466 0.82264 0.90947 0.75373 1.90665 1.55464 1.46373 1.50040 1.46092 1.06960 1.09491 1.74797 1.21433 0.94492 0.82172 1.01573 1.21943 0.91798 0.98378 1.01677 0.90973 1.21339 0.97013 0.95049 1.00368 1.22171 0.94519 0.99622 1.01778 1.20798 0.99241 0.84925 0.90688 1.44018 0.99150 1.05345 1.82825 1.19103 0.98696 0.87615 1.33020 0.91847 1.25045 0.99946 0.97339 0.97208 1.70030 1.22253 1.27008 1.35273 0.86380 0.81105 0.81654 0.77679 1.20884 1.21630 1.21032 1.20868 0.86181 0.97582 0.92477 0.92826 0.92782 0.92932 0.91608 0.91759 0.91512 0.90919 0.92159 0.91135 0.91992 0.91256 0.90601 0.92343 0.92274 0.92548 0.76337 0.92152 0.91750 0.92503 0.93486 0.93186 0.92786 0.96459 0.89610 0.93560 0.93266 0.96445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.01 5.23 -26.73 -0.14 -1.15 16 3 C -0.10 -0.97 3.21 -26.73 -0.09 -1.05 16 4 C -0.08 -0.83 0.43 -155.66 -0.07 -0.90 16 5 C -0.14 -1.27 8.02 37.15 0.30 -0.97 16 6 C -0.11 -1.10 4.54 -26.73 -0.12 -1.23 16 7 C -0.16 -1.69 9.31 37.16 0.35 -1.34 16 8 C 0.52 7.22 5.22 -10.98 -0.06 7.17 16 9 O -0.55 -9.47 15.98 5.56 0.09 -9.38 16 10 N -0.72 -9.68 5.11 -60.30 -0.31 -9.99 16 11 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 12 C -0.12 -1.92 2.38 -90.50 -0.22 -2.14 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 15 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 3.98 5.30 -3.69 -0.02 3.96 16 17 N -0.59 -14.38 3.00 -172.30 -0.52 -14.90 16 18 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 19 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 22 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.16 3.11 5.60 -3.71 -0.02 3.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 31 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.07 0.83 6.39 -51.93 -0.33 0.49 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 36 H 0.06 0.54 7.57 -51.93 -0.39 0.14 16 37 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 38 H 0.08 0.62 6.43 -51.93 -0.33 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 41 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 42 H 0.40 4.94 6.53 -40.82 -0.27 4.67 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 51 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 52 H 0.05 0.94 7.13 -51.93 -0.37 0.57 16 53 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -30.21 395.05 -9.46 -39.67 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -10.00 Total: 2.66 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.26 Total: -5.00 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.20 Total: -50.15 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.21 -9.46 -39.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.450 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds