Wall clock time and date at job start Fri Apr 10 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 C 1.52997 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47500 * 300.00481 * 4 3 2 6 6 C 1.53002 * 109.46903 * 60.00543 * 4 3 2 7 7 C 1.52999 * 109.47193 * 60.00201 * 6 4 3 8 8 C 1.50708 * 109.47119 * 180.02562 * 4 3 2 9 9 O 1.21278 * 119.99325 * 0.02562 * 8 4 3 10 10 N 1.34777 * 120.00121 * 180.02562 * 8 4 3 11 11 C 1.46497 * 119.99641 * 180.02562 * 10 8 4 12 12 C 1.53003 * 109.46886 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.49128 * 304.93116 * 12 11 10 14 14 C 1.53037 * 109.52571 * 184.85614 * 12 11 10 15 15 C 1.53042 * 109.54229 * 178.66263 * 14 12 11 16 16 C 1.53197 * 109.30694 * 61.36053 * 15 14 12 17 17 N 1.46956 * 108.89000 * 305.44384 * 16 15 14 18 18 C 1.36933 * 120.65426 * 233.52786 * 17 16 15 19 19 H 1.07997 * 119.99962 * 151.73490 * 18 17 16 20 20 C 1.38810 * 120.00381 * 331.73916 * 18 17 16 21 21 N 1.31626 * 119.99638 * 343.18102 * 20 18 17 22 22 Si 1.86793 * 120.00463 * 163.17922 * 20 18 17 23 23 H 1.48508 * 109.46924 * 60.00059 * 22 20 18 24 24 H 1.48497 * 109.47413 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47362 * 300.00284 * 22 20 18 26 26 C 1.46927 * 118.71486 * 53.36372 * 17 16 15 27 27 H 1.09000 * 109.46573 * 299.99728 * 1 2 3 28 28 H 1.09002 * 109.46972 * 59.99469 * 1 2 3 29 29 H 1.09001 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46955 * 240.00296 * 2 1 3 31 31 H 1.09003 * 109.47466 * 120.00714 * 2 1 3 32 32 H 1.08997 * 109.46579 * 60.00741 * 3 2 1 33 33 H 1.08996 * 109.47097 * 300.00140 * 3 2 1 34 34 H 1.09000 * 109.47102 * 299.99690 * 5 4 3 35 35 H 1.09001 * 109.47236 * 59.99976 * 5 4 3 36 36 H 1.09005 * 109.47211 * 180.02562 * 5 4 3 37 37 H 1.09005 * 109.46718 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47514 * 299.99238 * 6 4 3 39 39 H 1.09000 * 109.47202 * 180.02562 * 7 6 4 40 40 H 1.09005 * 109.46743 * 299.99316 * 7 6 4 41 41 H 1.08991 * 109.47451 * 59.99741 * 7 6 4 42 42 H 0.96996 * 119.99728 * 0.02562 * 10 8 4 43 43 H 1.08993 * 109.47465 * 60.00036 * 11 10 8 44 44 H 1.08996 * 109.47013 * 299.99801 * 11 10 8 45 45 H 1.09003 * 109.45532 * 298.68625 * 14 12 11 46 46 H 1.09000 * 109.45893 * 58.65521 * 14 12 11 47 47 H 1.08994 * 109.49956 * 181.31657 * 15 14 12 48 48 H 1.09001 * 109.49741 * 301.41488 * 15 14 12 49 49 H 1.09000 * 109.58579 * 65.15691 * 16 15 14 50 50 H 1.08999 * 109.58050 * 185.57602 * 16 15 14 51 51 H 0.97000 * 119.99586 * 180.02562 * 21 20 18 52 52 H 1.09000 * 109.58803 * 186.78032 * 26 17 16 53 53 H 1.08993 * 109.59297 * 66.49258 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0795 0.7212 1.2501 6 6 4.0804 0.7210 -1.2484 7 6 3.5710 1.4422 -2.4979 8 6 4.0725 2.8632 0.0013 9 8 3.2843 3.7850 0.0017 10 7 5.3975 3.1095 0.0014 11 6 5.8858 4.4907 0.0026 12 6 7.4159 4.4906 0.0018 13 1 7.7800 3.9014 0.8434 14 6 7.9275 5.9277 0.1251 15 6 9.4575 5.9253 0.1580 16 6 9.9913 5.3325 -1.1499 17 7 9.3898 4.0070 -1.3519 18 6 10.1777 2.9092 -1.5736 19 1 9.8340 1.9292 -1.2774 20 6 11.4183 3.0559 -2.1788 21 7 11.7048 4.1618 -2.8326 22 14 12.6810 1.6842 -2.0655 23 1 12.1270 0.4497 -2.6775 24 1 13.9138 2.0850 -2.7900 25 1 13.0058 1.4269 -0.6395 26 6 7.9266 3.8816 -1.3078 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.7159 1.2352 2.1399 35 1 3.7162 -0.3064 1.2500 36 1 5.1696 0.7216 1.2507 37 1 5.1705 0.7214 -1.2481 38 1 3.7172 -0.3067 -1.2485 39 1 3.9343 0.9281 -3.3877 40 1 2.4810 1.4422 -2.4983 41 1 3.9344 2.4698 -2.4978 42 1 6.0278 2.3722 0.0007 43 1 5.5226 5.0037 0.8930 44 1 5.5225 5.0052 -0.8869 45 1 7.5834 6.5101 -0.7296 46 1 7.5454 6.3715 1.0445 47 1 9.8206 6.9470 0.2693 48 1 9.8025 5.3225 0.9981 49 1 9.7237 5.9835 -1.9822 50 1 11.0756 5.2370 -1.0920 51 1 12.5715 4.2642 -3.2559 52 1 7.6484 2.8287 -1.3540 53 1 7.4886 4.4127 -2.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359584137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:59 Heat of formation + Delta-G solvation = -74.551355 kcal Electronic energy + Delta-G solvation = -27460.269175 eV Core-core repulsion = 23944.127032 eV Total energy + Delta-G solvation = -3516.142142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48680 -39.52244 -37.90673 -36.24603 -34.73780 -33.77721 -32.30194 -31.90849 -31.24448 -27.54893 -27.28143 -26.95544 -24.79220 -24.02063 -23.75618 -22.55152 -21.79569 -20.76303 -19.62242 -18.64750 -17.59564 -17.14942 -16.85305 -16.67321 -16.29650 -15.83068 -15.66066 -15.23769 -15.05944 -14.85548 -14.53888 -14.45669 -14.18510 -13.99783 -13.87673 -13.75581 -13.49530 -13.25166 -13.02264 -12.96824 -12.84375 -12.71687 -12.58818 -12.48235 -12.30519 -12.10344 -11.98091 -11.83163 -11.78114 -11.74973 -11.58571 -11.39908 -11.28337 -11.18697 -11.10919 -10.55576 -10.51823 -10.03029 -8.67149 -7.86023 -5.32198 1.48092 1.50579 1.57070 1.70125 2.25992 2.52013 3.28914 3.58413 3.65071 3.68266 3.87497 3.98300 4.00527 4.04951 4.14113 4.25802 4.35497 4.39646 4.40231 4.56661 4.56866 4.59733 4.70084 4.70795 4.75850 4.82274 4.87105 4.89632 4.90977 4.94374 5.00521 5.03276 5.09439 5.14268 5.15841 5.19173 5.22666 5.25754 5.28973 5.32715 5.39096 5.41787 5.48371 5.50808 5.57071 5.61144 5.66991 5.77733 6.39542 6.58807 7.15518 7.28050 7.86656 8.39374 9.20366 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003308 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.287034 B = 8461.996262 C = 9492.419264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.074 4.074 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.156 4.156 8 C 0.520 3.480 9 O -0.586 6.586 10 N -0.718 5.718 11 C 0.138 3.862 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.071 0.929 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.156 3.844 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.409 0.591 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.054 0.946 49 H -0.009 1.009 50 H 0.052 0.948 51 H 0.249 0.751 52 H 0.056 0.944 53 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.572 -8.085 8.316 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.130 4.130 4 C -0.077 4.077 5 C -0.199 4.199 6 C -0.148 4.148 7 C -0.214 4.214 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.369 5.369 11 C 0.013 3.987 12 C -0.120 4.120 13 H 0.095 0.905 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.203 1.203 26 C 0.030 3.970 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.245 0.755 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.009 0.991 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.074 0.926 53 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -17.968 -7.391 8.217 21.095 hybrid contribution 1.330 -0.258 -0.540 1.458 sum -16.638 -7.650 7.677 19.856 Atomic orbital electron populations 1.21772 0.95708 1.02044 1.01516 1.21659 0.95976 0.95145 1.03194 1.21416 0.91708 0.97980 1.01864 1.20893 0.97610 0.90379 0.98787 1.21941 1.01654 1.01624 0.94684 1.21674 1.00975 1.00495 0.91707 1.21846 1.01715 0.99397 0.98400 1.21122 0.81818 0.92119 0.74101 1.90646 1.56320 1.47912 1.51798 1.46059 1.07233 1.09173 1.74480 1.21223 0.93051 0.83038 1.01367 1.21704 0.92674 0.98204 0.99373 0.90470 1.21339 0.95186 0.95150 1.01879 1.21997 0.96112 1.00223 0.98532 1.20633 0.97490 0.84740 0.92416 1.44288 1.00830 1.05017 1.83024 1.19507 0.99112 0.88613 1.31968 0.91095 1.25826 1.01897 0.99608 0.97410 1.70199 1.22287 1.29094 1.36736 0.85346 0.78288 0.79149 0.77703 1.19901 1.22429 1.20275 1.20969 0.83830 0.98256 0.93932 0.93119 0.93300 0.91635 0.90770 0.90501 0.92918 0.92639 0.92585 0.88908 0.91590 0.91352 0.88107 0.91617 0.91836 0.95368 0.75504 0.91287 0.93048 0.92857 0.90254 0.91268 0.92741 0.99084 0.92990 0.94220 0.92556 0.98014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -1.63 5.23 30.59 0.16 -1.47 16 3 C -0.09 -1.76 3.21 30.59 0.10 -1.66 16 4 C -0.07 -1.42 0.43 -52.93 -0.02 -1.44 16 5 C -0.14 -2.13 8.02 71.98 0.58 -1.55 16 6 C -0.11 -1.93 4.54 30.59 0.14 -1.79 16 7 C -0.16 -3.23 9.31 71.98 0.67 -2.56 16 8 C 0.52 13.99 5.22 87.66 0.46 14.44 16 9 O -0.59 -20.32 15.98 -3.02 -0.05 -20.37 16 10 N -0.72 -18.42 5.11 -463.07 -2.37 -20.79 16 11 C 0.14 3.89 5.07 86.38 0.44 4.33 16 12 C -0.10 -3.10 2.38 -10.72 -0.03 -3.12 16 13 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.10 -3.03 5.17 30.62 0.16 -2.87 16 15 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 16 C 0.17 8.31 5.30 86.36 0.46 8.77 16 17 N -0.61 -29.85 3.00 -699.03 -2.10 -31.95 16 18 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 19 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 21 N -0.94 -55.39 11.20 21.65 0.24 -55.14 16 22 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.16 6.17 5.60 86.36 0.48 6.66 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.88 6.43 -2.38 -0.02 0.86 16 31 H 0.08 0.85 6.43 -2.39 -0.02 0.84 16 32 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.05 1.25 6.39 -2.39 -0.02 1.23 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.00 6.43 -2.39 -0.02 0.98 16 36 H 0.07 0.95 7.57 -2.38 -0.02 0.93 16 37 H 0.07 1.22 7.56 -2.38 -0.02 1.20 16 38 H 0.10 1.29 6.43 -2.39 -0.02 1.27 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.24 6.43 -2.38 -0.02 1.22 16 41 H 0.03 0.72 7.22 -2.39 -0.02 0.71 16 42 H 0.41 9.35 6.53 -92.71 -0.61 8.75 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 49 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 50 H 0.05 2.84 6.07 -2.39 -0.01 2.82 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 52 H 0.06 2.11 7.13 -2.39 -0.02 2.09 16 53 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -66.87 395.05 3.73 -63.15 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.25 Total: 22.81 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 5.71 Total: -3.71 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.22 Total: -107.88 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.87 3.73 -63.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.404 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds