Wall clock time and date at job start Fri Apr 10 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47415 * 2 1 4 4 C 1.52999 * 109.47320 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47222 * 60.00226 * 4 3 2 6 6 C 1.53001 * 109.46942 * 299.99762 * 4 3 2 7 7 C 1.52996 * 109.47036 * 300.00260 * 6 4 3 8 8 C 1.50706 * 109.46977 * 180.02562 * 4 3 2 9 9 O 1.21280 * 120.00126 * 359.97438 * 8 4 3 10 10 N 1.34769 * 119.99740 * 180.02562 * 8 4 3 11 11 C 1.46506 * 119.99903 * 179.97438 * 10 8 4 12 12 C 1.52998 * 109.47236 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.50032 * 305.00389 * 12 11 10 14 14 C 1.53042 * 109.49964 * 184.93531 * 12 11 10 15 15 C 1.53038 * 109.53756 * 178.71870 * 14 12 11 16 16 C 1.53187 * 109.34364 * 61.31730 * 15 14 12 17 17 N 1.46923 * 108.77453 * 305.38055 * 16 15 14 18 18 C 1.36939 * 120.63173 * 233.62279 * 17 16 15 19 19 H 1.07998 * 119.99750 * 151.80743 * 18 17 16 20 20 C 1.38807 * 119.99940 * 331.81460 * 18 17 16 21 21 N 1.31619 * 120.00069 * 343.08037 * 20 18 17 22 22 Si 1.86799 * 120.00143 * 163.08555 * 20 18 17 23 23 H 1.48503 * 109.46972 * 59.99524 * 22 20 18 24 24 H 1.48500 * 109.47330 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47101 * 299.99863 * 22 20 18 26 26 C 1.46927 * 118.74239 * 53.60769 * 17 16 15 27 27 H 1.08998 * 109.47633 * 60.00265 * 1 2 3 28 28 H 1.09008 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46826 * 299.99553 * 1 2 3 30 30 H 1.09001 * 109.46675 * 239.99925 * 2 1 3 31 31 H 1.08998 * 109.47616 * 120.00523 * 2 1 3 32 32 H 1.09003 * 109.47122 * 59.99761 * 3 2 1 33 33 H 1.09004 * 109.46938 * 300.00425 * 3 2 1 34 34 H 1.08998 * 109.47001 * 299.99902 * 5 4 3 35 35 H 1.08998 * 109.47544 * 60.00174 * 5 4 3 36 36 H 1.09001 * 109.46949 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46975 * 60.00285 * 6 4 3 38 38 H 1.09001 * 109.47040 * 180.02562 * 6 4 3 39 39 H 1.09004 * 109.46806 * 180.02562 * 7 6 4 40 40 H 1.09000 * 109.47099 * 299.99329 * 7 6 4 41 41 H 1.08993 * 109.47747 * 60.00384 * 7 6 4 42 42 H 0.97001 * 120.00875 * 359.97438 * 10 8 4 43 43 H 1.08998 * 109.47284 * 299.99558 * 11 10 8 44 44 H 1.08999 * 109.46793 * 60.00057 * 11 10 8 45 45 H 1.09000 * 109.45766 * 298.70591 * 14 12 11 46 46 H 1.08996 * 109.45924 * 58.66815 * 14 12 11 47 47 H 1.09005 * 109.47193 * 301.36438 * 15 14 12 48 48 H 1.09003 * 109.49445 * 181.28499 * 15 14 12 49 49 H 1.08995 * 109.58998 * 185.58689 * 16 15 14 50 50 H 1.09001 * 109.70360 * 65.23454 * 16 15 14 51 51 H 0.97002 * 120.00225 * 180.02562 * 21 20 18 52 52 H 1.08991 * 109.59399 * 186.60407 * 26 17 16 53 53 H 1.09004 * 109.70308 * 66.24134 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 4.0805 0.7210 1.2483 7 6 3.5709 1.4420 2.4978 8 6 4.0724 2.8632 0.0000 9 8 3.2842 3.7851 0.0004 10 7 5.3974 3.1094 -0.0009 11 6 5.8857 4.4907 -0.0009 12 6 7.4157 4.4907 -0.0014 13 1 7.7799 3.9012 0.8400 14 6 7.9266 5.9280 0.1228 15 6 9.4567 5.9263 0.1545 16 6 9.9906 5.3340 -1.1535 17 7 9.3899 4.0080 -1.3521 18 6 10.1787 2.9103 -1.5709 19 1 9.8352 1.9306 -1.2734 20 6 11.4199 3.0568 -2.1749 21 7 11.7058 4.1609 -2.8319 22 14 12.6843 1.6871 -2.0555 23 1 12.1329 0.4499 -2.6642 24 1 13.9176 2.0872 -2.7795 25 1 13.0075 1.4349 -0.6282 26 6 7.9266 3.8820 -1.3112 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9562 -0.8900 34 1 3.7161 -0.3063 -1.2502 35 1 3.7158 1.2353 -2.1399 36 1 5.1695 0.7218 -1.2508 37 1 3.7171 -0.3067 1.2483 38 1 5.1705 0.7213 1.2481 39 1 3.9350 0.9283 3.3876 40 1 3.9344 2.4697 2.4978 41 1 2.4810 1.4420 2.4983 42 1 6.0278 2.3722 -0.0016 43 1 5.5218 5.0048 -0.8905 44 1 5.5231 5.0042 0.8895 45 1 7.5822 6.5108 -0.7315 46 1 7.5444 6.3710 1.0423 47 1 9.8020 5.3236 0.9945 48 1 9.8193 6.9482 0.2658 49 1 11.0749 5.2391 -1.0958 50 1 9.7247 5.9842 -1.9869 51 1 12.5730 4.2632 -3.2543 52 1 7.6490 2.8291 -1.3576 53 1 7.4882 4.4131 -2.1562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359584138.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:02 Heat of formation + Delta-G solvation = -58.074461 kcal Electronic energy + Delta-G solvation = -27398.559388 eV Core-core repulsion = 23883.131738 eV Total energy + Delta-G solvation = -3515.427651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45025 -38.03998 -36.88463 -34.80581 -33.35619 -32.76203 -30.75452 -30.45589 -30.12791 -26.78037 -25.75520 -25.28091 -23.89358 -23.15207 -22.11598 -21.15398 -20.71923 -19.28604 -18.56191 -16.89962 -16.45580 -16.02344 -15.80135 -15.37657 -14.84800 -14.51582 -14.37548 -14.02962 -13.78863 -13.61736 -13.42809 -13.21725 -13.17438 -12.78963 -12.51144 -12.35335 -12.26203 -12.18224 -12.08868 -11.99249 -11.85929 -11.39119 -11.29654 -11.06152 -11.02588 -11.01276 -10.72730 -10.58729 -10.51143 -10.47424 -10.25311 -10.18958 -9.94962 -9.70735 -9.43471 -9.40850 -8.85003 -8.48219 -6.68977 -5.81067 -3.24299 2.78793 3.32845 3.35580 3.41977 3.42502 4.44758 4.46163 4.53550 4.66043 4.88273 4.92293 5.04233 5.09145 5.16116 5.27087 5.29410 5.41465 5.44136 5.45056 5.46899 5.51192 5.59896 5.61596 5.66063 5.72862 5.79725 5.83157 5.84474 5.89381 5.95144 5.98973 6.00918 6.02562 6.08986 6.18498 6.24013 6.33214 6.33698 6.37461 6.56817 6.58414 6.70200 6.77575 6.85252 6.95932 7.38489 7.65282 7.67698 7.76001 8.37183 8.42553 9.18676 9.82216 10.39361 11.27201 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.003234 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.313905 B = 8656.980459 C = 9618.964685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.095 4.095 4 C -0.079 4.079 5 C -0.145 4.145 6 C -0.114 4.114 7 C -0.157 4.157 8 C 0.523 3.477 9 O -0.548 6.548 10 N -0.722 5.722 11 C 0.127 3.873 12 C -0.117 4.117 13 H 0.072 0.928 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.155 3.845 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.401 0.599 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.017 0.983 51 H 0.254 0.746 52 H 0.049 0.951 53 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 -6.085 7.943 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.133 4.133 4 C -0.083 4.083 5 C -0.202 4.202 6 C -0.151 4.151 7 C -0.214 4.214 8 C 0.309 3.691 9 O -0.425 6.425 10 N -0.373 5.373 11 C 0.003 3.997 12 C -0.138 4.138 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.029 3.971 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.237 0.763 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.104 0.896 50 H 0.036 0.964 51 H 0.064 0.936 52 H 0.067 0.933 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.045 -5.369 7.824 19.508 hybrid contribution 1.101 -0.919 -0.022 1.434 sum -15.944 -6.288 7.801 18.831 Atomic orbital electron populations 1.21761 0.95971 1.01326 1.01867 1.21678 0.95741 0.96909 1.02235 1.21460 0.91927 0.96550 1.03381 1.20871 0.97492 0.92514 0.97377 1.21929 1.01600 1.00666 0.96045 1.21639 1.00877 0.99641 0.92963 1.21858 1.01620 1.00690 0.97215 1.20463 0.82268 0.90944 0.75379 1.90666 1.55472 1.46363 1.50048 1.46093 1.06958 1.09497 1.74782 1.21438 0.94507 0.82167 1.01568 1.21946 0.91780 0.98372 1.01679 0.90964 1.21338 0.97017 0.95049 1.00361 1.22168 0.94514 0.99606 1.01770 1.20790 0.99270 0.84908 0.90704 1.44020 0.99141 1.05266 1.82904 1.19106 0.98619 0.87669 1.33060 0.91834 1.25044 0.99946 0.97354 0.97193 1.70026 1.22238 1.27124 1.35181 0.86381 0.81113 0.81643 0.77686 1.20882 1.21629 1.21028 1.20877 0.86191 0.97587 0.92494 0.92763 0.92931 0.92842 0.91658 0.91705 0.91023 0.91405 0.91159 0.91972 0.91804 0.90550 0.91409 0.92533 0.92690 0.92145 0.76335 0.91733 0.92175 0.92513 0.93486 0.92782 0.93205 0.89607 0.96445 0.93552 0.93261 0.96429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.01 5.23 -26.74 -0.14 -1.15 16 3 C -0.10 -0.97 3.20 -26.74 -0.09 -1.05 16 4 C -0.08 -0.83 0.43 -155.66 -0.07 -0.90 16 5 C -0.14 -1.39 8.02 37.15 0.30 -1.09 16 6 C -0.11 -1.02 4.54 -26.73 -0.12 -1.14 16 7 C -0.16 -1.48 9.31 37.16 0.35 -1.14 16 8 C 0.52 7.22 5.21 -10.99 -0.06 7.16 16 9 O -0.55 -9.47 15.98 5.56 0.09 -9.38 16 10 N -0.72 -9.68 5.12 -60.29 -0.31 -9.99 16 11 C 0.13 1.88 5.07 -4.04 -0.02 1.85 16 12 C -0.12 -1.92 2.37 -90.50 -0.21 -2.13 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 15 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 16 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 17 N -0.59 -14.39 2.99 -172.32 -0.52 -14.90 16 18 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 19 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 22 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.16 3.10 5.60 -3.71 -0.02 3.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 31 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 32 H 0.07 0.79 6.39 -51.93 -0.33 0.46 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 37 H 0.08 0.58 6.43 -51.93 -0.33 0.24 16 38 H 0.07 0.61 7.56 -51.93 -0.39 0.21 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 41 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 42 H 0.40 4.94 6.53 -40.82 -0.27 4.67 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 52 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 53 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -30.23 395.04 -9.46 -39.68 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -10.00 Total: 2.49 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.26 Total: -4.83 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.20 Total: -50.16 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.23 -9.46 -39.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584138.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.392 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds