Wall clock time and date at job start Fri Apr 10 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47415 * 2 1 4 4 C 1.52999 * 109.47320 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47222 * 60.00226 * 4 3 2 6 6 C 1.53001 * 109.46942 * 299.99762 * 4 3 2 7 7 C 1.52996 * 109.47036 * 300.00260 * 6 4 3 8 8 C 1.50706 * 109.46977 * 180.02562 * 4 3 2 9 9 O 1.21280 * 120.00126 * 359.97438 * 8 4 3 10 10 N 1.34769 * 119.99740 * 180.02562 * 8 4 3 11 11 C 1.46506 * 119.99903 * 179.97438 * 10 8 4 12 12 C 1.52998 * 109.47236 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.50032 * 305.00389 * 12 11 10 14 14 C 1.53042 * 109.49964 * 184.93531 * 12 11 10 15 15 C 1.53038 * 109.53756 * 178.71870 * 14 12 11 16 16 C 1.53187 * 109.34364 * 61.31730 * 15 14 12 17 17 N 1.46923 * 108.77453 * 305.38055 * 16 15 14 18 18 C 1.36939 * 120.63173 * 233.62279 * 17 16 15 19 19 H 1.07998 * 119.99750 * 151.80743 * 18 17 16 20 20 C 1.38807 * 119.99940 * 331.81460 * 18 17 16 21 21 N 1.31619 * 120.00069 * 343.08037 * 20 18 17 22 22 Si 1.86799 * 120.00143 * 163.08555 * 20 18 17 23 23 H 1.48503 * 109.46972 * 59.99524 * 22 20 18 24 24 H 1.48500 * 109.47330 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47101 * 299.99863 * 22 20 18 26 26 C 1.46927 * 118.74239 * 53.60769 * 17 16 15 27 27 H 1.08998 * 109.47633 * 60.00265 * 1 2 3 28 28 H 1.09008 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46826 * 299.99553 * 1 2 3 30 30 H 1.09001 * 109.46675 * 239.99925 * 2 1 3 31 31 H 1.08998 * 109.47616 * 120.00523 * 2 1 3 32 32 H 1.09003 * 109.47122 * 59.99761 * 3 2 1 33 33 H 1.09004 * 109.46938 * 300.00425 * 3 2 1 34 34 H 1.08998 * 109.47001 * 299.99902 * 5 4 3 35 35 H 1.08998 * 109.47544 * 60.00174 * 5 4 3 36 36 H 1.09001 * 109.46949 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46975 * 60.00285 * 6 4 3 38 38 H 1.09001 * 109.47040 * 180.02562 * 6 4 3 39 39 H 1.09004 * 109.46806 * 180.02562 * 7 6 4 40 40 H 1.09000 * 109.47099 * 299.99329 * 7 6 4 41 41 H 1.08993 * 109.47747 * 60.00384 * 7 6 4 42 42 H 0.97001 * 120.00875 * 359.97438 * 10 8 4 43 43 H 1.08998 * 109.47284 * 299.99558 * 11 10 8 44 44 H 1.08999 * 109.46793 * 60.00057 * 11 10 8 45 45 H 1.09000 * 109.45766 * 298.70591 * 14 12 11 46 46 H 1.08996 * 109.45924 * 58.66815 * 14 12 11 47 47 H 1.09005 * 109.47193 * 301.36438 * 15 14 12 48 48 H 1.09003 * 109.49445 * 181.28499 * 15 14 12 49 49 H 1.08995 * 109.58998 * 185.58689 * 16 15 14 50 50 H 1.09001 * 109.70360 * 65.23454 * 16 15 14 51 51 H 0.97002 * 120.00225 * 180.02562 * 21 20 18 52 52 H 1.08991 * 109.59399 * 186.60407 * 26 17 16 53 53 H 1.09004 * 109.70308 * 66.24134 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 4.0805 0.7210 1.2483 7 6 3.5709 1.4420 2.4978 8 6 4.0724 2.8632 0.0000 9 8 3.2842 3.7851 0.0004 10 7 5.3974 3.1094 -0.0009 11 6 5.8857 4.4907 -0.0009 12 6 7.4157 4.4907 -0.0014 13 1 7.7799 3.9012 0.8400 14 6 7.9266 5.9280 0.1228 15 6 9.4567 5.9263 0.1545 16 6 9.9906 5.3340 -1.1535 17 7 9.3899 4.0080 -1.3521 18 6 10.1787 2.9103 -1.5709 19 1 9.8352 1.9306 -1.2734 20 6 11.4199 3.0568 -2.1749 21 7 11.7058 4.1609 -2.8319 22 14 12.6843 1.6871 -2.0555 23 1 12.1329 0.4499 -2.6642 24 1 13.9176 2.0872 -2.7795 25 1 13.0075 1.4349 -0.6282 26 6 7.9266 3.8820 -1.3112 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9562 -0.8900 34 1 3.7161 -0.3063 -1.2502 35 1 3.7158 1.2353 -2.1399 36 1 5.1695 0.7218 -1.2508 37 1 3.7171 -0.3067 1.2483 38 1 5.1705 0.7213 1.2481 39 1 3.9350 0.9283 3.3876 40 1 3.9344 2.4697 2.4978 41 1 2.4810 1.4420 2.4983 42 1 6.0278 2.3722 -0.0016 43 1 5.5218 5.0048 -0.8905 44 1 5.5231 5.0042 0.8895 45 1 7.5822 6.5108 -0.7315 46 1 7.5444 6.3710 1.0423 47 1 9.8020 5.3236 0.9945 48 1 9.8193 6.9482 0.2658 49 1 11.0749 5.2391 -1.0958 50 1 9.7247 5.9842 -1.9869 51 1 12.5730 4.2632 -3.2543 52 1 7.6490 2.8291 -1.3576 53 1 7.4882 4.4131 -2.1562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359584138.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:02 Heat of formation + Delta-G solvation = -74.500033 kcal Electronic energy + Delta-G solvation = -27399.271655 eV Core-core repulsion = 23883.131738 eV Total energy + Delta-G solvation = -3516.139917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48811 -39.52509 -37.90726 -36.24727 -34.73798 -33.77839 -32.30271 -31.89213 -31.25391 -27.55870 -27.27696 -26.95687 -24.79973 -23.99909 -23.75720 -22.55017 -21.79713 -20.76519 -19.61946 -18.65097 -17.60045 -17.13887 -16.83417 -16.71616 -16.30360 -15.84227 -15.53230 -15.34089 -15.07979 -14.82844 -14.53571 -14.45788 -14.17015 -13.99713 -13.88314 -13.74754 -13.51174 -13.24367 -13.01871 -12.97303 -12.84610 -12.71237 -12.58798 -12.48102 -12.30567 -12.09176 -11.98161 -11.83481 -11.78427 -11.74893 -11.58384 -11.39697 -11.28245 -11.18926 -11.10691 -10.55658 -10.51692 -10.03141 -8.67265 -7.86008 -5.32257 1.48124 1.50624 1.57104 1.69942 2.25849 2.52026 3.28882 3.58443 3.65029 3.68389 3.87175 3.98395 4.00646 4.05103 4.13959 4.26073 4.35187 4.39754 4.41961 4.56441 4.56539 4.59566 4.70791 4.72323 4.75894 4.81039 4.87185 4.89961 4.90225 4.94345 5.00351 5.03411 5.09433 5.14488 5.15663 5.19906 5.22922 5.26055 5.29340 5.32762 5.39162 5.42103 5.47938 5.50822 5.57216 5.61242 5.66999 5.78059 6.39566 6.58686 7.15523 7.27864 7.86721 8.39298 9.20269 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.003234 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.313905 B = 8656.980459 C = 9618.964685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.074 4.074 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.586 6.586 10 N -0.718 5.718 11 C 0.138 3.862 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.097 4.097 15 C -0.129 4.129 16 C 0.173 3.827 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.155 3.845 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.409 0.591 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.052 0.948 50 H -0.009 1.009 51 H 0.249 0.751 52 H 0.056 0.944 53 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.552 -8.060 9.569 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.130 4.130 4 C -0.077 4.077 5 C -0.201 4.201 6 C -0.148 4.148 7 C -0.212 4.212 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.369 5.369 11 C 0.013 3.987 12 C -0.119 4.119 13 H 0.095 0.905 14 C -0.135 4.135 15 C -0.168 4.168 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.203 1.203 26 C 0.029 3.971 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.245 0.755 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.010 0.990 51 H 0.058 0.942 52 H 0.075 0.925 53 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -17.947 -7.366 9.468 21.587 hybrid contribution 1.321 -0.268 -0.561 1.460 sum -16.626 -7.633 8.907 20.347 Atomic orbital electron populations 1.21771 0.95691 1.02053 1.01519 1.21654 0.95990 0.95142 1.03182 1.21418 0.91725 0.97980 1.01851 1.20893 0.97599 0.90395 0.98791 1.21951 1.01563 1.01695 0.94922 1.21674 1.01103 1.00444 0.91590 1.21844 1.01696 0.99513 0.98179 1.21115 0.81825 0.92106 0.74110 1.90646 1.56329 1.47898 1.51808 1.46060 1.07223 1.09183 1.74464 1.21227 0.93066 0.83027 1.01365 1.21704 0.92652 0.98191 0.99372 0.90517 1.21338 0.95184 0.95153 1.01874 1.21993 0.96113 1.00204 0.98525 1.20627 0.97518 0.84734 0.92423 1.44292 1.00824 1.04936 1.83100 1.19511 0.99043 0.88668 1.32001 0.91078 1.25825 1.01902 0.99619 0.97398 1.70195 1.22270 1.29208 1.36647 0.85346 0.78290 0.79150 0.77702 1.19895 1.22431 1.20281 1.20985 0.83842 0.98296 0.93958 0.93362 0.91625 0.93049 0.90862 0.90432 0.92225 0.93359 0.88813 0.93173 0.91833 0.88241 0.91057 0.91110 0.95008 0.92063 0.75502 0.92957 0.91378 0.92828 0.90289 0.92769 0.91287 0.92991 0.99044 0.94212 0.92513 0.97921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.64 5.23 30.59 0.16 -1.48 16 3 C -0.09 -1.77 3.20 30.59 0.10 -1.68 16 4 C -0.07 -1.43 0.43 -52.93 -0.02 -1.45 16 5 C -0.14 -2.49 8.02 71.98 0.58 -1.91 16 6 C -0.11 -1.70 4.54 30.59 0.14 -1.56 16 7 C -0.16 -2.64 9.31 71.98 0.67 -1.97 16 8 C 0.52 14.01 5.21 87.66 0.46 14.47 16 9 O -0.59 -20.35 15.98 -3.03 -0.05 -20.39 16 10 N -0.72 -18.42 5.12 -463.06 -2.37 -20.79 16 11 C 0.14 3.88 5.07 86.38 0.44 4.32 16 12 C -0.10 -3.09 2.37 -10.71 -0.03 -3.11 16 13 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.10 -3.02 5.17 30.62 0.16 -2.87 16 15 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 16 C 0.17 8.30 5.30 86.36 0.46 8.76 16 17 N -0.61 -29.83 2.99 -699.11 -2.09 -31.92 16 18 C -0.26 -14.01 9.58 84.03 0.81 -13.20 16 19 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 20 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 21 N -0.94 -55.37 11.20 21.65 0.24 -55.13 16 22 Si 0.97 43.96 29.59 68.60 2.03 45.99 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.15 6.13 5.60 86.37 0.48 6.61 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.88 6.43 -2.39 -0.02 0.87 16 31 H 0.08 0.86 6.43 -2.39 -0.02 0.85 16 32 H 0.06 1.29 6.39 -2.39 -0.02 1.27 16 33 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 34 H 0.09 1.18 6.43 -2.39 -0.02 1.17 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.10 7.56 -2.39 -0.02 1.08 16 37 H 0.10 1.11 6.43 -2.39 -0.02 1.10 16 38 H 0.07 1.07 7.56 -2.39 -0.02 1.05 16 39 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.03 0.68 7.22 -2.39 -0.02 0.66 16 41 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 42 H 0.41 9.36 6.53 -92.71 -0.61 8.76 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.05 2.84 6.06 -2.39 -0.01 2.82 16 50 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 52 H 0.06 2.12 7.14 -2.39 -0.02 2.10 16 53 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -66.79 395.04 3.73 -63.06 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.25 Total: 22.50 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.71 Total: -3.32 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -4.22 Total: -107.85 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.79 3.73 -63.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584138.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.438 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds