Wall clock time and date at job start Fri Apr 10 2020 22:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47527 * 2 1 4 4 C 1.52994 * 109.47374 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47017 * 60.00275 * 4 3 2 6 6 C 1.53003 * 109.47297 * 300.00453 * 4 3 2 7 7 C 1.52998 * 109.46693 * 299.99907 * 6 4 3 8 8 C 1.50697 * 109.47340 * 180.02562 * 4 3 2 9 9 O 1.21281 * 119.99718 * 0.02562 * 8 4 3 10 10 N 1.34780 * 120.00365 * 180.02562 * 8 4 3 11 11 C 1.46495 * 120.00145 * 180.02562 * 10 8 4 12 12 C 1.53003 * 109.47273 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.49452 * 54.93245 * 12 11 10 14 14 C 1.53033 * 109.50202 * 174.99893 * 12 11 10 15 15 C 1.53039 * 109.54135 * 181.31824 * 14 12 11 16 16 C 1.53193 * 109.31182 * 298.63679 * 15 14 12 17 17 N 1.46928 * 108.77558 * 54.63322 * 16 15 14 18 18 C 1.36939 * 120.62948 * 126.36714 * 17 16 15 19 19 H 1.07998 * 119.99697 * 331.91778 * 18 17 16 20 20 C 1.38812 * 119.99948 * 151.91586 * 18 17 16 21 21 N 1.31621 * 119.99722 * 343.21501 * 20 18 17 22 22 Si 1.86797 * 120.00136 * 163.21536 * 20 18 17 23 23 H 1.48497 * 109.47049 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47033 * 119.99925 * 22 20 18 25 25 H 1.48503 * 109.47061 * 240.00183 * 22 20 18 26 26 C 1.46924 * 118.73966 * 306.64301 * 17 16 15 27 27 H 1.08999 * 109.46670 * 299.99812 * 1 2 3 28 28 H 1.08998 * 109.47208 * 59.99463 * 1 2 3 29 29 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46670 * 240.00188 * 2 1 3 31 31 H 1.08998 * 109.47208 * 120.00537 * 2 1 3 32 32 H 1.09001 * 109.46570 * 60.00073 * 3 2 1 33 33 H 1.08998 * 109.47314 * 300.00472 * 3 2 1 34 34 H 1.08995 * 109.46997 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.46921 * 300.00162 * 5 4 3 36 36 H 1.08998 * 109.46879 * 59.99966 * 5 4 3 37 37 H 1.08999 * 109.47282 * 59.99906 * 6 4 3 38 38 H 1.09002 * 109.46888 * 179.97438 * 6 4 3 39 39 H 1.09006 * 109.47422 * 299.99354 * 7 6 4 40 40 H 1.08993 * 109.47594 * 60.00062 * 7 6 4 41 41 H 1.09007 * 109.46879 * 180.02562 * 7 6 4 42 42 H 0.96999 * 119.99764 * 359.97438 * 10 8 4 43 43 H 1.08999 * 109.47273 * 60.00148 * 11 10 8 44 44 H 1.08998 * 109.47288 * 300.00079 * 11 10 8 45 45 H 1.09005 * 109.45711 * 61.29310 * 14 12 11 46 46 H 1.08998 * 109.45089 * 301.33651 * 14 12 11 47 47 H 1.08999 * 109.49578 * 178.68575 * 15 14 12 48 48 H 1.09001 * 109.52102 * 58.60412 * 15 14 12 49 49 H 1.08996 * 109.58580 * 294.84971 * 16 15 14 50 50 H 1.09000 * 109.70506 * 174.49058 * 16 15 14 51 51 H 0.97006 * 119.99968 * 180.02562 * 21 20 18 52 52 H 1.08996 * 109.58947 * 173.14529 * 26 17 16 53 53 H 1.09007 * 109.58852 * 293.56956 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7210 -1.2484 6 6 4.0796 0.7212 1.2502 7 6 3.5691 1.4426 2.4991 8 6 4.0725 2.8631 0.0013 9 8 3.2844 3.7850 0.0017 10 7 5.3976 3.1094 0.0014 11 6 5.8859 4.4906 0.0026 12 6 7.4160 4.4906 0.0031 13 1 7.7800 3.9008 -0.8383 14 6 7.9269 5.9277 -0.1214 15 6 9.4569 5.9260 -0.1541 16 6 9.9909 5.3347 1.1544 17 7 9.3901 4.0088 1.3540 18 6 10.1790 2.9112 1.5735 19 1 11.1820 2.8786 1.1742 20 6 9.6896 1.8406 2.3090 21 7 8.6239 1.9946 3.0660 22 14 10.5433 0.1813 2.2246 23 1 11.7087 0.2703 1.3085 24 1 11.0077 -0.2060 3.5809 25 1 9.5920 -0.8396 1.7167 26 6 7.9271 3.8819 1.3077 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 5.1705 0.7205 -1.2477 35 1 3.7171 -0.3067 -1.2484 36 1 3.7176 1.2347 -2.1385 37 1 3.7162 -0.3064 1.2501 38 1 5.1696 0.7208 1.2503 39 1 3.9325 2.4703 2.4992 40 1 2.4791 1.4427 2.4987 41 1 3.9324 0.9291 3.3893 42 1 6.0279 2.3721 0.0014 43 1 5.5227 5.0036 0.8930 44 1 5.5226 5.0052 -0.8869 45 1 7.5825 6.5108 0.7327 46 1 7.5445 6.3705 -1.0411 47 1 9.8195 6.9478 -0.2662 48 1 9.8027 5.3230 -0.9937 49 1 9.7229 5.9862 1.9860 50 1 11.0754 5.2398 1.0992 51 1 8.2821 1.2465 3.5804 52 1 7.6501 2.8287 1.3512 53 1 7.4873 4.4127 2.1522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359584139.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:05 Heat of formation + Delta-G solvation = -58.347241 kcal Electronic energy + Delta-G solvation = -27991.070662 eV Core-core repulsion = 24475.631183 eV Total energy + Delta-G solvation = -3515.439479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.25136 -37.98064 -36.72897 -34.61248 -33.24215 -32.80545 -30.86453 -30.30863 -29.77782 -26.65463 -25.73023 -25.28255 -23.71468 -22.93653 -22.15686 -21.02898 -20.55390 -19.21240 -18.40256 -16.84804 -16.38851 -15.85563 -15.62157 -15.24366 -14.85202 -14.34905 -14.12174 -13.86992 -13.72071 -13.56916 -13.32130 -13.05693 -12.98277 -12.89465 -12.35973 -12.32327 -12.21532 -12.08398 -12.00502 -11.75966 -11.70124 -11.25484 -11.12371 -11.04048 -10.90494 -10.81584 -10.76079 -10.50148 -10.38373 -10.29107 -10.23348 -10.17303 -9.94085 -9.67478 -9.44929 -9.26241 -8.64581 -8.51300 -6.69479 -5.82799 -3.25517 2.98103 3.31407 3.40920 3.42799 3.53771 4.44856 4.64558 4.73026 4.83595 5.05845 5.08651 5.15650 5.21071 5.31746 5.41011 5.44059 5.54713 5.58154 5.58948 5.61534 5.64035 5.70764 5.74439 5.79897 5.80973 5.87880 5.96020 6.00350 6.00836 6.10734 6.12768 6.19423 6.26737 6.29544 6.29821 6.32725 6.36561 6.42475 6.49217 6.56448 6.65401 6.76973 6.84999 6.86488 7.00075 7.29801 7.58898 7.75748 7.89423 8.40483 8.57056 9.17338 9.80511 10.38286 11.25028 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.004416 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.107631 B = 6338.909627 C = 7825.562866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.079 4.079 5 C -0.143 4.143 6 C -0.114 4.114 7 C -0.153 4.153 8 C 0.525 3.475 9 O -0.553 6.553 10 N -0.718 5.718 11 C 0.131 3.869 12 C -0.127 4.127 13 H 0.068 0.932 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.181 3.819 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.404 0.596 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.017 0.983 50 H 0.052 0.948 51 H 0.253 0.747 52 H 0.087 0.913 53 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -1.986 -7.141 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.082 4.082 5 C -0.201 4.201 6 C -0.151 4.151 7 C -0.211 4.211 8 C 0.311 3.689 9 O -0.431 6.431 10 N -0.368 5.368 11 C 0.007 3.993 12 C -0.148 4.148 13 H 0.086 0.914 14 C -0.138 4.138 15 C -0.172 4.172 16 C 0.017 3.983 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.055 3.945 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.239 0.761 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.035 0.965 50 H 0.071 0.929 51 H 0.063 0.937 52 H 0.105 0.895 53 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.346 -1.434 -7.019 13.418 hybrid contribution 0.790 -1.165 0.064 1.410 sum -10.556 -2.600 -6.954 12.905 Atomic orbital electron populations 1.21759 0.96065 1.01227 1.01805 1.21681 0.95621 0.97039 1.02247 1.21442 0.92071 0.96417 1.03256 1.20863 0.97323 0.92627 0.97423 1.21916 1.01455 1.00646 0.96052 1.21635 1.01440 0.99222 0.92824 1.21814 1.00822 1.01075 0.97355 1.20429 0.82294 0.90880 0.75327 1.90644 1.55544 1.46385 1.50522 1.46057 1.06947 1.09522 1.74324 1.21357 0.94492 0.82322 1.01144 1.22060 0.92100 0.97608 1.03027 0.91358 1.21333 0.96199 0.95911 1.00390 1.21987 0.95366 0.99388 1.00455 1.20929 0.96471 0.87692 0.93224 1.44030 1.01688 1.02549 1.83220 1.19230 0.97930 0.94123 1.26836 0.91733 1.25023 0.98533 0.99500 0.96453 1.70056 1.25448 1.30187 1.28702 0.86297 0.79057 0.84484 0.77417 1.20300 1.21734 1.21537 1.20688 0.83234 1.00722 0.89901 0.92795 0.92889 0.93005 0.91815 0.91571 0.90946 0.91625 0.91982 0.91245 0.92267 0.90880 0.90920 0.92473 0.92612 0.92348 0.76064 0.91923 0.92541 0.92512 0.93459 0.93098 0.92460 0.96530 0.92935 0.93724 0.89492 0.96464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.23 5.23 -26.73 -0.14 -1.37 16 3 C -0.09 -1.13 3.21 -26.74 -0.09 -1.21 16 4 C -0.08 -1.01 0.43 -155.66 -0.07 -1.08 16 5 C -0.14 -1.58 8.02 37.16 0.30 -1.28 16 6 C -0.11 -1.46 4.54 -26.73 -0.12 -1.58 16 7 C -0.15 -2.12 9.31 37.16 0.35 -1.77 16 8 C 0.52 8.45 5.21 -10.99 -0.06 8.39 16 9 O -0.55 -10.58 15.98 5.56 0.09 -10.49 16 10 N -0.72 -11.55 5.12 -60.30 -0.31 -11.86 16 11 C 0.13 2.20 5.07 -4.04 -0.02 2.18 16 12 C -0.13 -2.28 2.36 -90.72 -0.21 -2.50 16 13 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 14 C -0.10 -1.65 5.17 -26.69 -0.14 -1.78 16 15 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 16 C 0.14 2.95 6.52 -3.71 -0.02 2.93 16 17 N -0.59 -14.33 3.00 -172.58 -0.52 -14.85 16 18 C -0.25 -6.66 9.58 -15.06 -0.14 -6.81 16 19 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -24.78 11.20 55.49 0.62 -24.16 16 22 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.18 4.04 4.36 -3.93 -0.02 4.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 31 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.07 0.96 6.38 -51.93 -0.33 0.62 16 33 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 34 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 35 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 38 H 0.07 1.04 7.57 -51.93 -0.39 0.64 16 39 H 0.06 0.92 7.22 -51.93 -0.37 0.55 16 40 H 0.05 0.70 6.43 -51.93 -0.33 0.36 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 6.41 6.53 -40.82 -0.27 6.14 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 51 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 52 H 0.09 2.11 5.26 -51.93 -0.27 1.84 16 53 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -29.25 395.01 -9.46 -38.71 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -10.00 Total: 6.13 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.26 Total: -5.22 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.20 Total: -50.86 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.25 -9.46 -38.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584139.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.639 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds