Wall clock time and date at job start Fri Apr 10 2020 22:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47527 * 2 1 4 4 C 1.52994 * 109.47374 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47017 * 60.00275 * 4 3 2 6 6 C 1.53003 * 109.47297 * 300.00453 * 4 3 2 7 7 C 1.52998 * 109.46693 * 299.99907 * 6 4 3 8 8 C 1.50697 * 109.47340 * 180.02562 * 4 3 2 9 9 O 1.21281 * 119.99718 * 0.02562 * 8 4 3 10 10 N 1.34780 * 120.00365 * 180.02562 * 8 4 3 11 11 C 1.46495 * 120.00145 * 180.02562 * 10 8 4 12 12 C 1.53003 * 109.47273 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.49452 * 54.93245 * 12 11 10 14 14 C 1.53033 * 109.50202 * 174.99893 * 12 11 10 15 15 C 1.53039 * 109.54135 * 181.31824 * 14 12 11 16 16 C 1.53193 * 109.31182 * 298.63679 * 15 14 12 17 17 N 1.46928 * 108.77558 * 54.63322 * 16 15 14 18 18 C 1.36939 * 120.62948 * 126.36714 * 17 16 15 19 19 H 1.07998 * 119.99697 * 331.91778 * 18 17 16 20 20 C 1.38812 * 119.99948 * 151.91586 * 18 17 16 21 21 N 1.31621 * 119.99722 * 343.21501 * 20 18 17 22 22 Si 1.86797 * 120.00136 * 163.21536 * 20 18 17 23 23 H 1.48497 * 109.47049 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47033 * 119.99925 * 22 20 18 25 25 H 1.48503 * 109.47061 * 240.00183 * 22 20 18 26 26 C 1.46924 * 118.73966 * 306.64301 * 17 16 15 27 27 H 1.08999 * 109.46670 * 299.99812 * 1 2 3 28 28 H 1.08998 * 109.47208 * 59.99463 * 1 2 3 29 29 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46670 * 240.00188 * 2 1 3 31 31 H 1.08998 * 109.47208 * 120.00537 * 2 1 3 32 32 H 1.09001 * 109.46570 * 60.00073 * 3 2 1 33 33 H 1.08998 * 109.47314 * 300.00472 * 3 2 1 34 34 H 1.08995 * 109.46997 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.46921 * 300.00162 * 5 4 3 36 36 H 1.08998 * 109.46879 * 59.99966 * 5 4 3 37 37 H 1.08999 * 109.47282 * 59.99906 * 6 4 3 38 38 H 1.09002 * 109.46888 * 179.97438 * 6 4 3 39 39 H 1.09006 * 109.47422 * 299.99354 * 7 6 4 40 40 H 1.08993 * 109.47594 * 60.00062 * 7 6 4 41 41 H 1.09007 * 109.46879 * 180.02562 * 7 6 4 42 42 H 0.96999 * 119.99764 * 359.97438 * 10 8 4 43 43 H 1.08999 * 109.47273 * 60.00148 * 11 10 8 44 44 H 1.08998 * 109.47288 * 300.00079 * 11 10 8 45 45 H 1.09005 * 109.45711 * 61.29310 * 14 12 11 46 46 H 1.08998 * 109.45089 * 301.33651 * 14 12 11 47 47 H 1.08999 * 109.49578 * 178.68575 * 15 14 12 48 48 H 1.09001 * 109.52102 * 58.60412 * 15 14 12 49 49 H 1.08996 * 109.58580 * 294.84971 * 16 15 14 50 50 H 1.09000 * 109.70506 * 174.49058 * 16 15 14 51 51 H 0.97006 * 119.99968 * 180.02562 * 21 20 18 52 52 H 1.08996 * 109.58947 * 173.14529 * 26 17 16 53 53 H 1.09007 * 109.58852 * 293.56956 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7210 -1.2484 6 6 4.0796 0.7212 1.2502 7 6 3.5691 1.4426 2.4991 8 6 4.0725 2.8631 0.0013 9 8 3.2844 3.7850 0.0017 10 7 5.3976 3.1094 0.0014 11 6 5.8859 4.4906 0.0026 12 6 7.4160 4.4906 0.0031 13 1 7.7800 3.9008 -0.8383 14 6 7.9269 5.9277 -0.1214 15 6 9.4569 5.9260 -0.1541 16 6 9.9909 5.3347 1.1544 17 7 9.3901 4.0088 1.3540 18 6 10.1790 2.9112 1.5735 19 1 11.1820 2.8786 1.1742 20 6 9.6896 1.8406 2.3090 21 7 8.6239 1.9946 3.0660 22 14 10.5433 0.1813 2.2246 23 1 11.7087 0.2703 1.3085 24 1 11.0077 -0.2060 3.5809 25 1 9.5920 -0.8396 1.7167 26 6 7.9271 3.8819 1.3077 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 5.1705 0.7205 -1.2477 35 1 3.7171 -0.3067 -1.2484 36 1 3.7176 1.2347 -2.1385 37 1 3.7162 -0.3064 1.2501 38 1 5.1696 0.7208 1.2503 39 1 3.9325 2.4703 2.4992 40 1 2.4791 1.4427 2.4987 41 1 3.9324 0.9291 3.3893 42 1 6.0279 2.3721 0.0014 43 1 5.5227 5.0036 0.8930 44 1 5.5226 5.0052 -0.8869 45 1 7.5825 6.5108 0.7327 46 1 7.5445 6.3705 -1.0411 47 1 9.8195 6.9478 -0.2662 48 1 9.8027 5.3230 -0.9937 49 1 9.7229 5.9862 1.9860 50 1 11.0754 5.2398 1.0992 51 1 8.2821 1.2465 3.5804 52 1 7.6501 2.8287 1.3512 53 1 7.4873 4.4127 2.1522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359584139.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:04 Heat of formation + Delta-G solvation = -73.776286 kcal Electronic energy + Delta-G solvation = -27991.739716 eV Core-core repulsion = 24475.631183 eV Total energy + Delta-G solvation = -3516.108533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.48776 -39.52260 -37.91349 -36.13371 -34.84325 -33.86326 -32.44056 -31.61137 -31.25343 -27.57835 -27.31665 -26.96584 -24.81591 -24.06045 -23.78051 -22.43333 -21.78760 -20.74189 -19.61835 -18.69779 -17.63538 -17.16625 -16.91887 -16.65393 -16.18595 -15.79146 -15.63425 -15.21401 -15.07421 -14.86722 -14.53153 -14.48409 -14.19598 -14.02426 -13.89421 -13.77854 -13.52317 -13.27304 -13.00316 -12.89628 -12.88657 -12.73948 -12.60946 -12.55443 -12.20799 -12.13029 -11.96399 -11.81364 -11.77733 -11.77130 -11.57008 -11.40627 -11.26479 -11.20230 -11.09854 -10.56466 -10.53351 -10.01494 -8.64615 -7.84031 -5.30433 1.46771 1.50388 1.59800 1.68829 2.28203 2.52923 3.28382 3.59062 3.64145 3.66823 3.85715 3.99509 4.06582 4.10291 4.15258 4.23611 4.33809 4.34749 4.37822 4.52661 4.55008 4.63186 4.66509 4.68678 4.79173 4.81229 4.87134 4.87836 4.88806 4.91480 5.01010 5.02964 5.11720 5.14058 5.14584 5.17636 5.22327 5.23135 5.26493 5.36123 5.38964 5.40389 5.46767 5.51765 5.56228 5.59655 5.68726 5.78205 6.41647 6.57379 7.17728 7.26008 7.87936 8.41004 9.21429 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.004416 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.107631 B = 6338.909627 C = 7825.562866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.074 4.074 5 C -0.141 4.141 6 C -0.109 4.109 7 C -0.151 4.151 8 C 0.521 3.479 9 O -0.586 6.586 10 N -0.717 5.717 11 C 0.138 3.862 12 C -0.111 4.111 13 H 0.070 0.930 14 C -0.099 4.099 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.265 4.265 19 H 0.063 0.937 20 C -0.041 4.041 21 N -0.927 5.927 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.297 1.297 25 H -0.283 1.283 26 C 0.193 3.807 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.405 0.595 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.008 0.992 50 H 0.052 0.948 51 H 0.250 0.750 52 H 0.064 0.936 53 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 -3.038 -8.980 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.077 4.077 5 C -0.198 4.198 6 C -0.147 4.147 7 C -0.208 4.208 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.368 5.368 11 C 0.014 3.986 12 C -0.131 4.131 13 H 0.089 0.911 14 C -0.137 4.137 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.334 5.334 18 C -0.395 4.395 19 H 0.081 0.919 20 C -0.237 4.237 21 N -0.573 5.573 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.224 1.224 25 H -0.209 1.209 26 C 0.067 3.933 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.241 0.759 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.026 0.974 50 H 0.070 0.930 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -11.546 -2.473 -8.876 14.772 hybrid contribution 0.890 -0.762 0.709 1.369 sum -10.657 -3.235 -8.167 13.810 Atomic orbital electron populations 1.21760 0.95396 1.02098 1.01615 1.21662 0.96206 0.95085 1.03106 1.21400 0.91224 0.98072 1.01999 1.20890 0.97922 0.90417 0.98441 1.21930 1.01309 1.01717 0.94836 1.21625 1.00367 1.00513 0.92171 1.21786 1.01619 0.99187 0.98196 1.21093 0.81784 0.92142 0.74135 1.90620 1.56199 1.47797 1.52081 1.46093 1.07267 1.09293 1.74113 1.21232 0.93635 0.82852 1.00895 1.21826 0.92588 0.98608 1.00115 0.91149 1.21360 0.95951 0.94582 1.01834 1.21865 0.95442 1.00844 0.97834 1.21112 0.96569 0.86225 0.95090 1.44316 1.02197 1.03468 1.83452 1.19499 0.98210 0.95206 1.26617 0.91947 1.25692 0.99321 1.02403 0.96301 1.70203 1.26799 1.30787 1.29520 0.85335 0.78316 0.80648 0.76912 1.19507 1.22413 1.20903 1.20441 0.82606 0.99209 0.91029 0.93276 0.92897 0.91574 0.90453 0.91079 0.92659 0.92502 0.92259 0.88831 0.92049 0.88135 0.92608 0.95757 0.91293 0.92218 0.75906 0.93732 0.91084 0.92924 0.90253 0.89904 0.92368 0.97401 0.92988 0.94092 0.91749 0.99981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.07 5.23 30.59 0.16 -1.91 16 3 C -0.09 -2.05 3.21 30.59 0.10 -1.95 16 4 C -0.07 -1.83 0.43 -52.93 -0.02 -1.86 16 5 C -0.14 -2.83 8.02 71.98 0.58 -2.25 16 6 C -0.11 -2.73 4.54 30.59 0.14 -2.59 16 7 C -0.15 -4.23 9.31 71.98 0.67 -3.56 16 8 C 0.52 16.97 5.21 87.66 0.46 17.43 16 9 O -0.59 -22.90 15.98 -3.03 -0.05 -22.95 16 10 N -0.72 -23.50 5.12 -463.07 -2.37 -25.87 16 11 C 0.14 4.66 5.07 86.38 0.44 5.10 16 12 C -0.11 -3.94 2.36 -10.86 -0.03 -3.97 16 13 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 14 C -0.10 -3.08 5.17 30.62 0.16 -2.92 16 15 C -0.12 -3.85 6.08 30.67 0.19 -3.66 16 16 C 0.14 5.55 6.52 86.36 0.56 6.11 16 17 N -0.61 -30.00 3.00 -699.92 -2.10 -32.10 16 18 C -0.27 -14.20 9.58 84.03 0.81 -13.40 16 19 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 20 C -0.04 -2.21 4.92 84.86 0.42 -1.79 16 21 N -0.93 -52.48 11.20 21.65 0.24 -52.24 16 22 Si 0.96 43.00 29.59 68.60 2.03 45.02 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.19 8.90 4.36 86.22 0.38 9.28 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.11 6.43 -2.39 -0.02 1.09 16 31 H 0.07 1.14 6.43 -2.39 -0.02 1.12 16 32 H 0.05 1.45 6.38 -2.39 -0.02 1.44 16 33 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 34 H 0.06 1.23 7.56 -2.39 -0.02 1.21 16 35 H 0.09 1.44 6.43 -2.38 -0.02 1.42 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.98 6.43 -2.39 -0.02 1.96 16 38 H 0.06 1.60 7.57 -2.39 -0.02 1.58 16 39 H 0.02 0.81 7.22 -2.38 -0.02 0.80 16 40 H 0.07 1.72 6.43 -2.39 -0.02 1.70 16 41 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.41 13.12 6.53 -92.71 -0.61 12.52 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 51 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 52 H 0.06 3.24 5.26 -2.39 -0.01 3.23 16 53 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 Total: -1.00 -64.55 395.01 3.72 -60.82 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.25 Total: 30.85 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.71 Total: -3.54 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.23 Total: -110.21 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -64.55 3.72 -60.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584139.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.952 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds