Wall clock time and date at job start Fri Apr 10 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.52997 * 109.47031 * 119.99934 * 2 1 3 5 5 H 1.09007 * 109.47209 * 305.71581 * 4 2 1 6 6 C 1.53003 * 109.47293 * 185.71789 * 4 2 1 7 7 N 1.46496 * 109.46978 * 185.52825 * 6 4 2 8 8 C 1.34782 * 119.99797 * 179.00360 * 7 6 4 9 9 O 1.21280 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47105 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00053 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00045 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00026 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99929 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47142 * 90.00177 * 16 14 12 18 18 H 1.48497 * 109.47170 * 209.99909 * 16 14 12 19 19 H 1.48504 * 109.47172 * 329.99977 * 16 14 12 20 20 N 1.46894 * 109.47353 * 65.71525 * 4 2 1 21 21 C 1.46845 * 110.99893 * 41.44245 * 20 4 2 22 22 C 1.53035 * 109.52542 * 174.15821 * 21 20 4 23 23 C 1.53125 * 109.27445 * 59.18059 * 22 21 20 24 24 C 1.53009 * 109.52033 * 182.43863 * 23 22 21 25 25 C 1.53123 * 109.16123 * 302.34133 * 23 22 21 26 26 C 1.46851 * 111.00217 * 277.23278 * 20 4 2 27 27 H 1.09003 * 109.47236 * 280.65857 * 1 2 3 28 28 H 1.09003 * 109.47347 * 40.65392 * 1 2 3 29 29 H 1.09000 * 109.47484 * 160.65723 * 1 2 3 30 30 H 1.09002 * 109.47140 * 239.99891 * 2 1 3 31 31 H 1.08997 * 109.46736 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47009 * 299.99754 * 3 2 1 33 33 H 1.09002 * 109.47232 * 59.99947 * 3 2 1 34 34 H 1.08997 * 109.46689 * 305.53356 * 6 4 2 35 35 H 1.09005 * 109.46871 * 65.52690 * 6 4 2 36 36 H 0.96990 * 120.00447 * 359.00351 * 7 6 4 37 37 H 1.09006 * 109.46694 * 299.99789 * 10 8 7 38 38 H 1.09000 * 109.47190 * 59.99431 * 10 8 7 39 39 H 1.08998 * 109.47000 * 299.99705 * 11 10 8 40 40 H 1.09000 * 109.47250 * 59.99753 * 11 10 8 41 41 H 0.96996 * 119.99667 * 179.97438 * 15 14 12 42 42 H 1.08999 * 109.46346 * 54.14482 * 21 20 4 43 43 H 1.09002 * 109.46060 * 294.17617 * 21 20 4 44 44 H 1.08999 * 109.50700 * 299.24330 * 22 21 20 45 45 H 1.09003 * 109.50320 * 179.11600 * 22 21 20 46 46 H 1.08997 * 109.52248 * 62.25278 * 23 22 21 47 47 H 1.09006 * 109.46778 * 59.99848 * 24 23 22 48 48 H 1.08994 * 109.47025 * 179.97438 * 24 23 22 49 49 H 1.08994 * 109.47214 * 300.00266 * 24 23 22 50 50 H 1.08995 * 109.49925 * 177.59869 * 25 23 22 51 51 H 1.08993 * 109.50043 * 297.71807 * 25 23 22 52 52 H 1.08995 * 109.45994 * 65.82337 * 26 20 4 53 53 H 1.08995 * 109.46036 * 305.85157 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5954 -0.2699 2.1363 6 6 3.5632 -0.5980 1.3232 7 7 4.0639 -1.3976 2.4439 8 6 5.3875 -1.4566 2.6914 9 8 6.1640 -0.8480 1.9859 10 6 5.9028 -2.2796 3.8438 11 6 7.4281 -2.1767 3.9023 12 6 7.9433 -2.9992 5.0551 13 1 7.2519 -3.5415 5.6830 14 6 9.2974 -3.0602 5.3077 15 7 9.7470 -3.7785 6.3135 16 14 10.4933 -2.1228 4.2212 17 1 10.7033 -0.7614 4.7759 18 1 11.7905 -2.8442 4.1756 19 1 9.9369 -2.0176 2.8484 20 7 1.6662 -2.1402 1.1823 21 6 1.8563 -2.6711 -0.1736 22 6 1.5978 -4.1795 -0.1732 23 6 0.1676 -4.4471 0.3040 24 6 -0.0772 -5.9562 0.3647 25 6 -0.0185 -3.8421 1.6983 26 6 0.2869 -2.3435 1.6436 27 1 -0.3634 0.1901 1.0100 28 1 -0.3634 0.7797 -0.6695 29 1 -0.3634 -0.9696 -0.3404 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.0025 -0.9599 0.3936 35 1 3.8364 0.4468 1.4716 36 1 3.4430 -1.8846 3.0078 37 1 5.4771 -1.9067 4.7754 38 1 5.6143 -3.3214 3.7039 39 1 7.8535 -2.5498 2.9706 40 1 7.7169 -1.1349 4.0420 41 1 10.6996 -3.8217 6.4909 42 1 2.8784 -2.4780 -0.4992 43 1 1.1597 -2.1834 -0.8555 44 1 2.3030 -4.6694 0.4981 45 1 1.7237 -4.5705 -1.1828 46 1 -0.5390 -3.9901 -0.3887 47 1 0.6285 -6.4111 1.0599 48 1 -1.0952 -6.1458 0.7049 49 1 0.0611 -6.3869 -0.6270 50 1 -1.0472 -3.9922 2.0257 51 1 0.6614 -4.3268 2.3989 52 1 -0.4023 -1.8574 0.9532 53 1 0.1692 -1.9124 2.6378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360003039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:09 Heat of formation + Delta-G solvation = -60.610612 kcal Electronic energy + Delta-G solvation = -27196.067041 eV Core-core repulsion = 23680.529414 eV Total energy + Delta-G solvation = -3515.537626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52977 -38.89723 -36.98047 -34.04866 -33.38802 -33.29860 -31.29769 -31.14079 -29.49736 -27.91953 -26.82136 -25.58692 -23.68915 -23.26403 -22.05566 -20.96017 -20.33333 -19.57357 -19.18858 -17.10252 -16.78823 -15.99687 -15.85085 -15.26013 -15.17884 -14.93113 -14.68081 -14.34447 -14.20798 -13.97924 -13.69618 -13.46820 -13.03739 -12.82401 -12.65849 -12.61930 -12.56651 -12.48471 -12.37249 -12.08873 -12.00688 -11.76812 -11.50746 -11.37426 -11.29737 -11.12969 -10.89160 -10.80830 -10.74836 -10.49614 -10.37391 -10.06734 -9.95689 -9.71760 -9.13644 -9.05667 -8.63469 -8.44739 -8.38152 -5.97504 -3.95490 3.29964 3.42247 3.48198 3.49488 3.60460 3.76770 4.37201 4.44564 4.52206 4.55004 4.56319 4.63607 4.63653 4.92150 5.03269 5.09717 5.13306 5.13924 5.21839 5.31728 5.32875 5.38210 5.39379 5.40871 5.45414 5.48408 5.52007 5.57682 5.63231 5.67180 5.71421 5.77432 5.81452 5.86276 5.90529 5.94109 5.95888 6.01077 6.03158 6.21324 6.22334 6.23245 6.75886 6.82347 6.89905 6.95184 7.45560 7.52802 7.85348 8.04327 8.57642 8.84789 9.06663 9.66042 11.15478 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003130 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.060452 B = 8944.534901 C =10201.908313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.150 4.150 4 C 0.077 3.923 5 H 0.086 0.914 6 C 0.132 3.868 7 N -0.727 5.727 8 C 0.508 3.492 9 O -0.549 6.549 10 C -0.121 4.121 11 C 0.002 3.998 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.068 3.932 15 N -0.905 5.905 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.261 1.261 20 N -0.525 5.525 21 C 0.053 3.947 22 C -0.113 4.113 23 C -0.092 4.092 24 C -0.147 4.147 25 C -0.112 4.112 26 C 0.039 3.961 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.050 0.950 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.445 3.756 -14.615 30.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.208 4.208 4 C -0.032 4.032 5 H 0.104 0.896 6 C 0.007 3.993 7 N -0.380 5.380 8 C 0.296 3.704 9 O -0.426 6.426 10 C -0.161 4.161 11 C -0.036 4.036 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.544 5.544 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.185 1.185 20 N -0.249 5.249 21 C -0.075 4.075 22 C -0.151 4.151 23 C -0.111 4.111 24 C -0.204 4.204 25 C -0.150 4.150 26 C -0.088 4.088 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.238 0.762 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.068 0.932 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.405 3.868 -14.712 29.611 hybrid contribution -0.170 0.646 -0.757 1.010 sum -25.574 4.514 -15.469 30.228 Atomic orbital electron populations 1.22145 0.95115 1.01595 1.01981 1.21780 0.96049 0.97331 0.99389 1.21910 1.01809 0.95246 1.01806 1.22086 0.95393 0.87804 0.97869 0.89594 1.21277 0.91634 0.95674 0.90748 1.45939 1.07784 1.51685 1.32583 1.21472 0.81307 0.81264 0.86320 1.90634 1.56185 1.45634 1.50188 1.21625 1.00621 0.99070 0.94771 1.19353 0.89265 0.97335 0.97629 1.21144 0.92955 1.29305 1.12633 0.90968 1.24976 0.98388 0.94988 0.94965 1.69918 1.14230 1.40917 1.29377 0.86793 0.80265 0.80058 0.82422 1.20292 1.21516 1.18512 1.62032 1.23240 1.15195 1.24398 1.22159 1.01184 0.95057 0.89097 1.21667 0.96651 0.95466 1.01300 1.21162 0.96963 0.95938 0.96994 1.21815 1.01448 0.95420 1.01735 1.21658 1.01205 0.95012 0.97142 1.22500 0.89054 0.96820 1.00464 0.92401 0.92579 0.92165 0.90267 0.91797 0.92703 0.92517 0.92210 0.91483 0.76198 0.89889 0.89745 0.95914 0.96383 0.92799 0.90682 0.94337 0.90789 0.91822 0.91957 0.92374 0.92915 0.92878 0.91857 0.90894 0.93181 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 7.55 37.16 0.28 -0.67 16 2 C -0.13 -0.93 1.99 -90.62 -0.18 -1.11 16 3 C -0.15 -1.13 8.60 37.16 0.32 -0.81 16 4 C 0.08 0.67 1.66 -67.72 -0.11 0.56 16 5 H 0.09 0.73 7.62 -51.93 -0.40 0.33 16 6 C 0.13 1.58 4.41 -4.04 -0.02 1.56 16 7 N -0.73 -10.22 5.38 -60.29 -0.32 -10.54 16 8 C 0.51 9.64 7.83 -10.98 -0.09 9.56 16 9 O -0.55 -12.60 15.98 5.56 0.09 -12.51 16 10 C -0.12 -2.45 5.64 -27.89 -0.16 -2.61 16 11 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 12 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 16 Si 0.88 23.06 27.47 -169.99 -4.67 18.39 16 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 20 N -0.53 -4.48 3.94 -226.70 -0.89 -5.38 16 21 C 0.05 0.45 4.08 -3.84 -0.02 0.44 16 22 C -0.11 -0.94 5.38 -26.65 -0.14 -1.08 16 23 C -0.09 -0.66 2.79 -90.49 -0.25 -0.92 16 24 C -0.15 -1.01 9.20 37.16 0.34 -0.67 16 25 C -0.11 -0.82 5.38 -26.65 -0.14 -0.96 16 26 C 0.04 0.28 4.76 -3.83 -0.02 0.27 16 27 H 0.06 0.36 7.50 -51.93 -0.39 -0.03 16 28 H 0.06 0.34 7.99 -51.93 -0.41 -0.08 16 29 H 0.06 0.38 5.10 -51.93 -0.26 0.12 16 30 H 0.08 0.63 6.09 -51.93 -0.32 0.32 16 31 H 0.06 0.55 6.46 -51.93 -0.34 0.22 16 32 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.80 7.16 -51.93 -0.37 0.43 16 35 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 36 H 0.40 4.91 8.14 -40.82 -0.33 4.58 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 40 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.07 0.75 6.96 -51.93 -0.36 0.39 16 43 H 0.04 0.30 5.36 -51.93 -0.28 0.02 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.05 0.34 4.27 -51.93 -0.22 0.11 16 53 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -33.40 391.11 -9.70 -43.10 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -9.86 Total: -1.04 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.71 Total: -10.17 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.44 Total: -43.67 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.67 Total: 18.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.40 -9.70 -43.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360003039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.507 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds