Wall clock time and date at job start Fri Apr 10 2020 22:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.52997 * 109.47031 * 119.99934 * 2 1 3 5 5 H 1.09007 * 109.47209 * 305.71581 * 4 2 1 6 6 C 1.53003 * 109.47293 * 185.71789 * 4 2 1 7 7 N 1.46496 * 109.46978 * 185.52825 * 6 4 2 8 8 C 1.34782 * 119.99797 * 179.00360 * 7 6 4 9 9 O 1.21280 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47105 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00053 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00045 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00026 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99929 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47142 * 90.00177 * 16 14 12 18 18 H 1.48497 * 109.47170 * 209.99909 * 16 14 12 19 19 H 1.48504 * 109.47172 * 329.99977 * 16 14 12 20 20 N 1.46894 * 109.47353 * 65.71525 * 4 2 1 21 21 C 1.46845 * 110.99893 * 41.44245 * 20 4 2 22 22 C 1.53035 * 109.52542 * 174.15821 * 21 20 4 23 23 C 1.53125 * 109.27445 * 59.18059 * 22 21 20 24 24 C 1.53009 * 109.52033 * 182.43863 * 23 22 21 25 25 C 1.53123 * 109.16123 * 302.34133 * 23 22 21 26 26 C 1.46851 * 111.00217 * 277.23278 * 20 4 2 27 27 H 1.09003 * 109.47236 * 280.65857 * 1 2 3 28 28 H 1.09003 * 109.47347 * 40.65392 * 1 2 3 29 29 H 1.09000 * 109.47484 * 160.65723 * 1 2 3 30 30 H 1.09002 * 109.47140 * 239.99891 * 2 1 3 31 31 H 1.08997 * 109.46736 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47009 * 299.99754 * 3 2 1 33 33 H 1.09002 * 109.47232 * 59.99947 * 3 2 1 34 34 H 1.08997 * 109.46689 * 305.53356 * 6 4 2 35 35 H 1.09005 * 109.46871 * 65.52690 * 6 4 2 36 36 H 0.96990 * 120.00447 * 359.00351 * 7 6 4 37 37 H 1.09006 * 109.46694 * 299.99789 * 10 8 7 38 38 H 1.09000 * 109.47190 * 59.99431 * 10 8 7 39 39 H 1.08998 * 109.47000 * 299.99705 * 11 10 8 40 40 H 1.09000 * 109.47250 * 59.99753 * 11 10 8 41 41 H 0.96996 * 119.99667 * 179.97438 * 15 14 12 42 42 H 1.08999 * 109.46346 * 54.14482 * 21 20 4 43 43 H 1.09002 * 109.46060 * 294.17617 * 21 20 4 44 44 H 1.08999 * 109.50700 * 299.24330 * 22 21 20 45 45 H 1.09003 * 109.50320 * 179.11600 * 22 21 20 46 46 H 1.08997 * 109.52248 * 62.25278 * 23 22 21 47 47 H 1.09006 * 109.46778 * 59.99848 * 24 23 22 48 48 H 1.08994 * 109.47025 * 179.97438 * 24 23 22 49 49 H 1.08994 * 109.47214 * 300.00266 * 24 23 22 50 50 H 1.08995 * 109.49925 * 177.59869 * 25 23 22 51 51 H 1.08993 * 109.50043 * 297.71807 * 25 23 22 52 52 H 1.08995 * 109.45994 * 65.82337 * 26 20 4 53 53 H 1.08995 * 109.46036 * 305.85157 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5954 -0.2699 2.1363 6 6 3.5632 -0.5980 1.3232 7 7 4.0639 -1.3976 2.4439 8 6 5.3875 -1.4566 2.6914 9 8 6.1640 -0.8480 1.9859 10 6 5.9028 -2.2796 3.8438 11 6 7.4281 -2.1767 3.9023 12 6 7.9433 -2.9992 5.0551 13 1 7.2519 -3.5415 5.6830 14 6 9.2974 -3.0602 5.3077 15 7 9.7470 -3.7785 6.3135 16 14 10.4933 -2.1228 4.2212 17 1 10.7033 -0.7614 4.7759 18 1 11.7905 -2.8442 4.1756 19 1 9.9369 -2.0176 2.8484 20 7 1.6662 -2.1402 1.1823 21 6 1.8563 -2.6711 -0.1736 22 6 1.5978 -4.1795 -0.1732 23 6 0.1676 -4.4471 0.3040 24 6 -0.0772 -5.9562 0.3647 25 6 -0.0185 -3.8421 1.6983 26 6 0.2869 -2.3435 1.6436 27 1 -0.3634 0.1901 1.0100 28 1 -0.3634 0.7797 -0.6695 29 1 -0.3634 -0.9696 -0.3404 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.0025 -0.9599 0.3936 35 1 3.8364 0.4468 1.4716 36 1 3.4430 -1.8846 3.0078 37 1 5.4771 -1.9067 4.7754 38 1 5.6143 -3.3214 3.7039 39 1 7.8535 -2.5498 2.9706 40 1 7.7169 -1.1349 4.0420 41 1 10.6996 -3.8217 6.4909 42 1 2.8784 -2.4780 -0.4992 43 1 1.1597 -2.1834 -0.8555 44 1 2.3030 -4.6694 0.4981 45 1 1.7237 -4.5705 -1.1828 46 1 -0.5390 -3.9901 -0.3887 47 1 0.6285 -6.4111 1.0599 48 1 -1.0952 -6.1458 0.7049 49 1 0.0611 -6.3869 -0.6270 50 1 -1.0472 -3.9922 2.0257 51 1 0.6614 -4.3268 2.3989 52 1 -0.4023 -1.8574 0.9532 53 1 0.1692 -1.9124 2.6378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360003039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:08 Heat of formation + Delta-G solvation = -82.102022 kcal Electronic energy + Delta-G solvation = -27196.998978 eV Core-core repulsion = 23680.529414 eV Total energy + Delta-G solvation = -3516.469564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31212 -40.29481 -37.69282 -35.57701 -35.20186 -33.93548 -33.29839 -31.82111 -30.46009 -28.60971 -28.06393 -26.86740 -24.34687 -24.24839 -22.99187 -22.45188 -21.29411 -20.66168 -20.02539 -19.14998 -17.56787 -17.45638 -17.05822 -16.46298 -16.24984 -15.98297 -15.76566 -15.35340 -15.12384 -14.86857 -14.84304 -14.70557 -14.55715 -13.99079 -13.80139 -13.57132 -13.38347 -13.25908 -13.21961 -13.12941 -12.90442 -12.75136 -12.68880 -12.46356 -12.14506 -12.08763 -12.01002 -11.95140 -11.76278 -11.74852 -11.44023 -11.38816 -11.37199 -11.08448 -11.02026 -10.77353 -10.69570 -9.91813 -9.04501 -8.30862 -6.33491 1.33443 1.35005 1.50932 1.77584 2.35670 2.36332 2.94902 3.04689 3.67148 3.77236 3.90357 3.94112 4.02034 4.04341 4.13779 4.26813 4.36558 4.41478 4.44192 4.49136 4.52155 4.52845 4.61917 4.67199 4.74419 4.77530 4.80484 4.84555 4.87887 4.91102 4.96861 4.99011 5.02283 5.05950 5.08154 5.18905 5.23444 5.30425 5.33540 5.34860 5.37064 5.39212 5.41798 5.46751 5.59950 5.62200 5.64619 6.18303 6.24960 6.26228 6.72534 6.73465 7.31742 7.42163 8.84957 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003130 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.060452 B = 8944.534901 C =10201.908313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.149 4.149 4 C 0.088 3.912 5 H 0.096 0.904 6 C 0.131 3.869 7 N -0.703 5.703 8 C 0.511 3.489 9 O -0.593 6.593 10 C -0.115 4.115 11 C 0.007 3.993 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.939 3.061 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.263 1.263 20 N -0.536 5.536 21 C 0.056 3.944 22 C -0.112 4.112 23 C -0.088 4.088 24 C -0.146 4.146 25 C -0.110 4.110 26 C 0.040 3.960 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.415 0.585 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.076 0.924 51 H 0.057 0.943 52 H 0.062 0.938 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.647 4.624 -15.581 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.207 4.207 4 C -0.021 4.021 5 H 0.114 0.886 6 C 0.007 3.993 7 N -0.355 5.355 8 C 0.299 3.701 9 O -0.474 6.474 10 C -0.155 4.155 11 C -0.031 4.031 12 C -0.566 4.566 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.585 5.585 16 Si 0.763 3.237 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.187 1.187 20 N -0.260 5.260 21 C -0.071 4.071 22 C -0.150 4.150 23 C -0.106 4.106 24 C -0.203 4.203 25 C -0.148 4.148 26 C -0.086 4.086 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.095 0.905 51 H 0.076 0.924 52 H 0.080 0.920 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.667 4.724 -15.670 32.145 hybrid contribution 0.443 0.325 -0.433 0.699 sum -27.224 5.049 -16.102 32.030 Atomic orbital electron populations 1.22087 0.93650 1.01984 1.02544 1.21716 0.97104 0.96896 0.98289 1.21897 1.00785 0.95496 1.02505 1.21967 0.92697 0.88335 0.99081 0.88554 1.21417 0.94059 0.94810 0.89015 1.45718 1.06256 1.50790 1.32728 1.21131 0.82572 0.80789 0.85577 1.90620 1.57607 1.47612 1.51583 1.21454 0.97159 1.00426 0.96463 1.19198 0.92982 0.95693 0.95226 1.21439 0.92860 1.29165 1.13185 0.93248 1.25807 1.00364 0.95976 0.96285 1.70026 1.14979 1.42432 1.31018 0.85819 0.78346 0.79168 0.80321 1.19271 1.20241 1.18740 1.61983 1.24537 1.14987 1.24482 1.22092 1.00357 0.95288 0.89406 1.21644 0.97073 0.95127 1.01107 1.21135 0.96150 0.96176 0.97171 1.21800 1.01666 0.95187 1.01637 1.21646 1.01588 0.94882 0.96712 1.22541 0.88230 0.96899 1.00977 0.91828 0.91936 0.91925 0.90871 0.93379 0.91847 0.92011 0.93624 0.91840 0.74750 0.88201 0.88513 0.97400 0.97344 0.92370 0.92605 0.93151 0.92864 0.91395 0.91033 0.93437 0.92018 0.92656 0.90514 0.92449 0.91980 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.55 71.98 0.54 -0.85 16 2 C -0.12 -1.54 1.99 -10.79 -0.02 -1.56 16 3 C -0.15 -2.01 8.60 71.98 0.62 -1.39 16 4 C 0.09 1.36 1.66 44.92 0.07 1.44 16 5 H 0.10 1.35 7.62 -2.38 -0.02 1.33 16 6 C 0.13 3.05 4.41 86.38 0.38 3.43 16 7 N -0.70 -19.03 5.38 -463.06 -2.49 -21.52 16 8 C 0.51 19.16 7.83 87.66 0.69 19.85 16 9 O -0.59 -27.33 15.98 -3.03 -0.05 -27.38 16 10 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 11 C 0.01 0.36 3.33 29.85 0.10 0.46 16 12 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 13 H 0.05 3.08 7.99 -2.91 -0.02 3.05 16 14 C 0.01 0.80 5.47 84.66 0.46 1.27 16 15 N -0.94 -60.07 13.96 21.45 0.30 -59.77 16 16 Si 0.94 47.82 27.47 68.60 1.88 49.71 16 17 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 19 H -0.26 -13.40 6.54 99.48 0.65 -12.75 16 20 N -0.54 -8.24 3.94 -871.13 -3.44 -11.68 16 21 C 0.06 0.90 4.08 86.33 0.35 1.25 16 22 C -0.11 -1.76 5.38 30.65 0.16 -1.59 16 23 C -0.09 -1.11 2.79 -10.71 -0.03 -1.14 16 24 C -0.15 -1.81 9.20 71.99 0.66 -1.14 16 25 C -0.11 -1.38 5.38 30.65 0.16 -1.21 16 26 C 0.04 0.48 4.76 86.33 0.41 0.89 16 27 H 0.06 0.56 7.50 -2.39 -0.02 0.54 16 28 H 0.06 0.55 7.99 -2.39 -0.02 0.53 16 29 H 0.06 0.59 5.10 -2.39 -0.01 0.57 16 30 H 0.07 1.06 6.09 -2.39 -0.01 1.04 16 31 H 0.05 0.80 6.46 -2.39 -0.02 0.78 16 32 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 1.22 7.16 -2.39 -0.02 1.21 16 35 H 0.06 1.57 6.68 -2.38 -0.02 1.55 16 36 H 0.42 9.37 8.14 -92.72 -0.75 8.62 16 37 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 38 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 39 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 40 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.06 1.11 6.96 -2.39 -0.02 1.09 16 43 H 0.05 0.69 5.36 -2.39 -0.01 0.68 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 49 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 52 H 0.06 0.62 4.27 -2.39 -0.01 0.61 16 53 H 0.08 0.87 7.92 -2.39 -0.02 0.85 16 Total: -1.00 -72.22 391.11 1.25 -70.96 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.06 Total: 15.49 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.99 Total: -15.81 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -5.63 Total: -92.97 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.88 Total: 49.71 kcal Total: -72.22 1.25 -70.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360003039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.141 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds