Wall clock time and date at job start Fri Apr 10 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47297 * 2 1 4 4 C 1.52995 * 109.47128 * 119.99962 * 2 1 3 5 5 H 1.09006 * 109.47629 * 306.02022 * 4 2 1 6 6 C 1.53004 * 109.47310 * 66.01933 * 4 2 1 7 7 N 1.46498 * 109.46851 * 290.93981 * 6 4 2 8 8 C 1.34777 * 119.99667 * 176.52497 * 7 6 4 9 9 O 1.21282 * 120.00083 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00021 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47302 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47302 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99839 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99813 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00500 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99536 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46747 * 89.99976 * 16 14 12 18 18 H 1.48498 * 109.46745 * 210.00086 * 16 14 12 19 19 H 1.48493 * 109.47108 * 329.99950 * 16 14 12 20 20 N 1.46903 * 109.47421 * 186.01971 * 4 2 1 21 21 C 1.46843 * 110.99883 * 294.15799 * 20 4 2 22 22 C 1.53034 * 109.52432 * 174.15725 * 21 20 4 23 23 C 1.53120 * 109.27962 * 59.17706 * 22 21 20 24 24 C 1.52992 * 109.57873 * 182.41066 * 23 22 21 25 25 C 1.53125 * 109.16065 * 302.35014 * 23 22 21 26 26 C 1.46844 * 111.00049 * 169.94369 * 20 4 2 27 27 H 1.08999 * 109.47443 * 291.39928 * 1 2 3 28 28 H 1.09004 * 109.47449 * 51.39901 * 1 2 3 29 29 H 1.08999 * 109.47258 * 171.39769 * 1 2 3 30 30 H 1.08993 * 109.47181 * 240.00010 * 2 1 3 31 31 H 1.08991 * 109.47590 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47085 * 300.00313 * 3 2 1 33 33 H 1.09005 * 109.47294 * 59.99661 * 3 2 1 34 34 H 1.08999 * 109.47343 * 170.94296 * 6 4 2 35 35 H 1.08997 * 109.46684 * 50.93947 * 6 4 2 36 36 H 0.96991 * 120.00475 * 356.53000 * 7 6 4 37 37 H 1.08998 * 109.47107 * 299.99723 * 10 8 7 38 38 H 1.08999 * 109.47191 * 59.99554 * 10 8 7 39 39 H 1.09000 * 109.46954 * 299.99353 * 11 10 8 40 40 H 1.08999 * 109.47445 * 59.99607 * 11 10 8 41 41 H 0.96992 * 120.00258 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.45989 * 294.17236 * 21 20 4 43 43 H 1.09007 * 109.46398 * 54.13944 * 21 20 4 44 44 H 1.08994 * 109.50488 * 299.24035 * 22 21 20 45 45 H 1.09000 * 109.50432 * 179.11941 * 22 21 20 46 46 H 1.09002 * 109.52151 * 62.24646 * 23 22 21 47 47 H 1.09002 * 109.47592 * 179.71724 * 24 23 22 48 48 H 1.09003 * 109.47262 * 299.71664 * 24 23 22 49 49 H 1.08993 * 109.47142 * 59.71458 * 24 23 22 50 50 H 1.08998 * 109.49655 * 297.70853 * 25 23 22 51 51 H 1.08994 * 109.50300 * 177.59434 * 25 23 22 52 52 H 1.08995 * 109.46785 * 305.85701 * 26 20 4 53 53 H 1.09002 * 109.46447 * 65.82893 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.5913 -0.2734 2.1360 6 6 1.6572 -2.2008 1.1759 7 7 0.2056 -2.3373 1.3191 8 6 -0.3704 -3.5513 1.2153 9 8 0.3128 -4.5307 1.0030 10 6 -1.8637 -3.6918 1.3620 11 6 -2.2558 -5.1621 1.2030 12 6 -3.7491 -5.3025 1.3490 13 1 -4.3576 -4.4302 1.5369 14 6 -4.3384 -6.5444 1.2428 15 7 -3.5975 -7.6065 1.0135 16 14 -6.1895 -6.7184 1.4245 17 1 -6.8332 -6.5739 0.0942 18 1 -6.5081 -8.0558 1.9860 19 1 -6.6985 -5.6641 2.3379 20 7 3.5018 -0.5967 1.3241 21 6 4.1481 -1.3103 0.2153 22 6 5.6541 -1.0392 0.2414 23 6 6.2293 -1.5098 1.5802 24 6 7.7238 -1.1875 1.6377 25 6 5.5057 -0.7872 2.7199 26 6 4.0041 -1.0655 2.6219 27 1 -0.3634 0.3749 0.9568 28 1 -0.3634 0.6412 -0.8031 29 1 -0.3634 -1.0161 -0.1537 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.1542 -2.7449 1.9790 35 1 1.9675 -2.6091 0.2141 36 1 -0.3408 -1.5541 1.4884 37 1 -2.1666 -3.3400 2.3482 38 1 -2.3615 -3.0977 0.5956 39 1 -1.9529 -5.5143 0.2169 40 1 -1.7579 -5.7559 1.9696 41 1 -4.0121 -8.4802 0.9391 42 1 3.9699 -2.3806 0.3192 43 1 3.7330 -0.9633 -0.7310 44 1 5.8336 0.0294 0.1238 45 1 6.1356 -1.5815 -0.5723 46 1 6.0844 -2.5854 1.6809 47 1 8.1304 -1.5186 2.5933 48 1 8.2380 -1.7022 0.8261 49 1 7.8677 -0.1120 1.5347 50 1 5.6829 0.2854 2.6412 51 1 5.8813 -1.1494 3.6769 52 1 3.4844 -0.5409 3.4236 53 1 3.8266 -2.1370 2.7145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360003040.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:12 Heat of formation + Delta-G solvation = -62.721051 kcal Electronic energy + Delta-G solvation = -26964.890982 eV Core-core repulsion = 23449.261840 eV Total energy + Delta-G solvation = -3515.629142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.40624 -38.91805 -37.05226 -33.93494 -33.58586 -33.40188 -31.10366 -31.02874 -29.25619 -27.46330 -26.77670 -25.39285 -23.61571 -23.53922 -21.94355 -21.41356 -20.31247 -19.69127 -19.15707 -16.93844 -16.53122 -15.90971 -15.61686 -15.39650 -15.11259 -14.79976 -14.46581 -14.43484 -14.22523 -14.08291 -13.76462 -13.57206 -13.15782 -12.85663 -12.64563 -12.51843 -12.37171 -12.27160 -12.19057 -11.99738 -11.91075 -11.75381 -11.34965 -11.17304 -11.04331 -10.96630 -10.92237 -10.86058 -10.78390 -10.59449 -10.50073 -10.28612 -9.94926 -9.65703 -9.18649 -9.03692 -8.69033 -8.43788 -8.31353 -5.95517 -3.99938 3.27470 3.33546 3.38310 3.40579 3.43177 3.81607 4.37074 4.48058 4.51032 4.51972 4.55178 4.72329 4.88759 5.00691 5.07468 5.12442 5.21343 5.25679 5.27238 5.38293 5.39332 5.40312 5.41299 5.45168 5.55072 5.56861 5.61062 5.68408 5.70453 5.78194 5.79355 5.84917 5.88756 5.89315 5.92535 5.95288 6.07415 6.17538 6.18491 6.23420 6.25112 6.29181 6.65793 6.87168 6.90345 6.91150 7.75019 7.87107 7.89422 8.07983 8.39498 8.80255 9.08834 9.63543 11.15464 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.002565 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.158671 B =10913.487090 C =11732.262052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.135 4.135 4 C 0.078 3.922 5 H 0.087 0.913 6 C 0.090 3.910 7 N -0.742 5.742 8 C 0.506 3.494 9 O -0.536 6.536 10 C -0.130 4.130 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.519 5.519 21 C 0.045 3.955 22 C -0.109 4.109 23 C -0.097 4.097 24 C -0.145 4.145 25 C -0.108 4.108 26 C 0.048 3.952 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.074 0.926 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.088 20.392 0.462 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.104 4.104 3 C -0.192 4.192 4 C -0.031 4.031 5 H 0.105 0.895 6 C -0.036 4.036 7 N -0.400 5.400 8 C 0.294 3.706 9 O -0.411 6.411 10 C -0.170 4.170 11 C 0.000 4.000 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.242 5.242 21 C -0.083 4.083 22 C -0.147 4.147 23 C -0.115 4.115 24 C -0.202 4.202 25 C -0.146 4.146 26 C -0.079 4.079 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.093 0.907 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.719 19.974 0.252 28.069 hybrid contribution -1.461 -0.742 0.281 1.662 sum 18.259 19.232 0.533 26.524 Atomic orbital electron populations 1.22233 0.95085 1.03262 1.01893 1.21133 0.95537 0.96818 0.96938 1.21695 1.02043 0.94753 1.00729 1.22045 0.88077 0.93328 0.99610 0.89474 1.21966 0.82601 0.97111 1.01917 1.46580 1.07421 1.10380 1.75589 1.21604 0.92053 0.81935 0.74973 1.90664 1.65463 1.37809 1.47187 1.21867 0.88449 1.04371 1.02335 1.18889 0.95532 0.87162 0.98432 1.21226 0.92429 0.93284 1.49558 0.92598 1.25032 0.98077 0.95995 0.95320 1.69996 1.35161 0.98744 1.48966 0.86589 0.85710 0.77395 0.78246 1.20665 1.21228 1.19888 1.62243 1.03421 1.55984 1.02600 1.22212 0.94636 0.96665 0.94782 1.21627 0.94342 1.01876 0.96833 1.21204 0.94973 1.00016 0.95339 1.21797 0.95399 1.01501 1.01533 1.21620 0.93849 1.01167 0.97984 1.22162 0.95840 0.98631 0.91299 0.92532 0.92254 0.90771 0.91190 0.91475 0.93588 0.93126 0.92277 0.91588 0.76217 0.90319 0.90278 0.95866 0.95889 0.92957 0.94197 0.90336 0.91189 0.91677 0.91476 0.92823 0.92802 0.92687 0.91147 0.91683 0.90715 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 7.62 37.16 0.28 -1.22 16 2 C -0.09 -0.76 2.11 -90.63 -0.19 -0.96 16 3 C -0.13 -1.09 8.96 37.16 0.33 -0.75 16 4 C 0.08 0.75 1.58 -67.71 -0.11 0.64 16 5 H 0.09 0.81 7.96 -51.93 -0.41 0.40 16 6 C 0.09 1.15 4.08 -4.04 -0.02 1.13 16 7 N -0.74 -10.49 3.84 -60.29 -0.23 -10.72 16 8 C 0.51 9.88 7.83 -10.98 -0.09 9.79 16 9 O -0.54 -12.92 15.98 5.56 0.09 -12.83 16 10 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 11 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 12 C -0.53 -15.06 9.11 -34.44 -0.31 -15.38 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 N -0.52 -4.63 3.58 -226.69 -0.81 -5.44 16 21 C 0.04 0.41 4.56 -3.84 -0.02 0.39 16 22 C -0.11 -0.85 5.38 -26.65 -0.14 -0.99 16 23 C -0.10 -0.74 2.79 -90.50 -0.25 -0.99 16 24 C -0.14 -0.94 9.20 37.15 0.34 -0.60 16 25 C -0.11 -0.82 5.38 -26.65 -0.14 -0.97 16 26 C 0.05 0.43 5.15 -3.84 -0.02 0.41 16 27 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.07 0.80 5.75 -51.93 -0.30 0.50 16 30 H 0.07 0.68 6.68 -51.93 -0.35 0.34 16 31 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.84 6.48 -51.93 -0.34 0.50 16 35 H 0.07 0.95 6.97 -51.93 -0.36 0.58 16 36 H 0.40 4.58 5.71 -40.82 -0.23 4.34 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.04 0.43 6.78 -51.93 -0.35 0.08 16 43 H 0.08 0.70 6.34 -51.92 -0.33 0.37 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 53 H 0.04 0.39 6.70 -51.93 -0.35 0.05 16 LS Contribution 397.25 15.07 5.99 5.99 Total: -1.00 -33.11 397.25 -10.06 -43.17 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -10.10 Total: -0.15 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.71 Total: -9.83 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.31 Total: -43.11 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.11 -10.06 -43.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360003040.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.551 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds