Wall clock time and date at job start Fri Apr 10 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47297 * 2 1 4 4 C 1.52995 * 109.47128 * 119.99962 * 2 1 3 5 5 H 1.09006 * 109.47629 * 306.02022 * 4 2 1 6 6 C 1.53004 * 109.47310 * 66.01933 * 4 2 1 7 7 N 1.46498 * 109.46851 * 290.93981 * 6 4 2 8 8 C 1.34777 * 119.99667 * 176.52497 * 7 6 4 9 9 O 1.21282 * 120.00083 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00021 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47302 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47302 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99839 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99813 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00500 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99536 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46747 * 89.99976 * 16 14 12 18 18 H 1.48498 * 109.46745 * 210.00086 * 16 14 12 19 19 H 1.48493 * 109.47108 * 329.99950 * 16 14 12 20 20 N 1.46903 * 109.47421 * 186.01971 * 4 2 1 21 21 C 1.46843 * 110.99883 * 294.15799 * 20 4 2 22 22 C 1.53034 * 109.52432 * 174.15725 * 21 20 4 23 23 C 1.53120 * 109.27962 * 59.17706 * 22 21 20 24 24 C 1.52992 * 109.57873 * 182.41066 * 23 22 21 25 25 C 1.53125 * 109.16065 * 302.35014 * 23 22 21 26 26 C 1.46844 * 111.00049 * 169.94369 * 20 4 2 27 27 H 1.08999 * 109.47443 * 291.39928 * 1 2 3 28 28 H 1.09004 * 109.47449 * 51.39901 * 1 2 3 29 29 H 1.08999 * 109.47258 * 171.39769 * 1 2 3 30 30 H 1.08993 * 109.47181 * 240.00010 * 2 1 3 31 31 H 1.08991 * 109.47590 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47085 * 300.00313 * 3 2 1 33 33 H 1.09005 * 109.47294 * 59.99661 * 3 2 1 34 34 H 1.08999 * 109.47343 * 170.94296 * 6 4 2 35 35 H 1.08997 * 109.46684 * 50.93947 * 6 4 2 36 36 H 0.96991 * 120.00475 * 356.53000 * 7 6 4 37 37 H 1.08998 * 109.47107 * 299.99723 * 10 8 7 38 38 H 1.08999 * 109.47191 * 59.99554 * 10 8 7 39 39 H 1.09000 * 109.46954 * 299.99353 * 11 10 8 40 40 H 1.08999 * 109.47445 * 59.99607 * 11 10 8 41 41 H 0.96992 * 120.00258 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.45989 * 294.17236 * 21 20 4 43 43 H 1.09007 * 109.46398 * 54.13944 * 21 20 4 44 44 H 1.08994 * 109.50488 * 299.24035 * 22 21 20 45 45 H 1.09000 * 109.50432 * 179.11941 * 22 21 20 46 46 H 1.09002 * 109.52151 * 62.24646 * 23 22 21 47 47 H 1.09002 * 109.47592 * 179.71724 * 24 23 22 48 48 H 1.09003 * 109.47262 * 299.71664 * 24 23 22 49 49 H 1.08993 * 109.47142 * 59.71458 * 24 23 22 50 50 H 1.08998 * 109.49655 * 297.70853 * 25 23 22 51 51 H 1.08994 * 109.50300 * 177.59434 * 25 23 22 52 52 H 1.08995 * 109.46785 * 305.85701 * 26 20 4 53 53 H 1.09002 * 109.46447 * 65.82893 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.5913 -0.2734 2.1360 6 6 1.6572 -2.2008 1.1759 7 7 0.2056 -2.3373 1.3191 8 6 -0.3704 -3.5513 1.2153 9 8 0.3128 -4.5307 1.0030 10 6 -1.8637 -3.6918 1.3620 11 6 -2.2558 -5.1621 1.2030 12 6 -3.7491 -5.3025 1.3490 13 1 -4.3576 -4.4302 1.5369 14 6 -4.3384 -6.5444 1.2428 15 7 -3.5975 -7.6065 1.0135 16 14 -6.1895 -6.7184 1.4245 17 1 -6.8332 -6.5739 0.0942 18 1 -6.5081 -8.0558 1.9860 19 1 -6.6985 -5.6641 2.3379 20 7 3.5018 -0.5967 1.3241 21 6 4.1481 -1.3103 0.2153 22 6 5.6541 -1.0392 0.2414 23 6 6.2293 -1.5098 1.5802 24 6 7.7238 -1.1875 1.6377 25 6 5.5057 -0.7872 2.7199 26 6 4.0041 -1.0655 2.6219 27 1 -0.3634 0.3749 0.9568 28 1 -0.3634 0.6412 -0.8031 29 1 -0.3634 -1.0161 -0.1537 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.1542 -2.7449 1.9790 35 1 1.9675 -2.6091 0.2141 36 1 -0.3408 -1.5541 1.4884 37 1 -2.1666 -3.3400 2.3482 38 1 -2.3615 -3.0977 0.5956 39 1 -1.9529 -5.5143 0.2169 40 1 -1.7579 -5.7559 1.9696 41 1 -4.0121 -8.4802 0.9391 42 1 3.9699 -2.3806 0.3192 43 1 3.7330 -0.9633 -0.7310 44 1 5.8336 0.0294 0.1238 45 1 6.1356 -1.5815 -0.5723 46 1 6.0844 -2.5854 1.6809 47 1 8.1304 -1.5186 2.5933 48 1 8.2380 -1.7022 0.8261 49 1 7.8677 -0.1120 1.5347 50 1 5.6829 0.2854 2.6412 51 1 5.8813 -1.1494 3.6769 52 1 3.4844 -0.5409 3.4236 53 1 3.8266 -2.1370 2.7145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360003040.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:11 Heat of formation + Delta-G solvation = -82.799518 kcal Electronic energy + Delta-G solvation = -26965.761650 eV Core-core repulsion = 23449.261840 eV Total energy + Delta-G solvation = -3516.499810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39856 -40.24948 -37.93917 -35.59764 -35.08314 -34.35944 -33.02045 -31.80050 -30.20036 -28.49785 -27.70849 -26.98885 -24.59917 -24.29194 -23.40981 -22.49771 -21.49651 -20.62468 -20.14470 -18.82198 -17.62665 -17.43909 -16.85556 -16.70932 -16.38463 -15.99394 -15.52648 -15.47904 -15.24779 -14.99397 -14.67251 -14.57573 -14.33635 -14.14544 -14.00681 -13.67665 -13.32722 -13.24861 -13.19544 -12.89996 -12.85503 -12.79239 -12.69089 -12.48814 -12.46631 -12.08284 -11.94324 -11.76542 -11.74976 -11.65640 -11.58208 -11.48579 -11.31832 -11.15876 -10.99101 -10.79659 -10.58146 -10.00944 -9.30086 -8.18967 -6.33315 1.41468 1.44480 1.55404 1.68080 2.18591 2.43468 2.90056 3.13963 3.55659 3.75441 3.84946 3.87628 3.96250 4.05426 4.11038 4.28823 4.31530 4.37630 4.40702 4.47114 4.51621 4.51828 4.54799 4.63631 4.75729 4.77450 4.81946 4.85977 4.86760 4.90826 4.97775 5.03921 5.05189 5.09175 5.15194 5.19178 5.22890 5.30011 5.34033 5.35781 5.38265 5.47931 5.49823 5.55083 5.61056 5.63075 5.83963 6.06326 6.11012 6.16291 6.55491 6.85253 7.31216 7.37203 8.93833 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.002565 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.158671 B =10913.487090 C =11732.262052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.127 4.127 4 C 0.088 3.912 5 H 0.101 0.899 6 C 0.094 3.906 7 N -0.713 5.713 8 C 0.507 3.493 9 O -0.592 6.592 10 C -0.119 4.119 11 C 0.043 3.957 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.009 4.009 15 N -0.939 5.939 16 Si 0.975 3.025 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.254 1.254 20 N -0.509 5.509 21 C 0.045 3.955 22 C -0.104 4.104 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.103 4.103 26 C 0.046 3.954 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.418 0.582 37 H 0.105 0.895 38 H 0.106 0.894 39 H -0.019 1.019 40 H -0.020 1.020 41 H 0.263 0.737 42 H 0.016 0.984 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.084 0.916 53 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.189 23.658 1.097 29.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.102 4.102 3 C -0.184 4.184 4 C -0.021 4.021 5 H 0.119 0.881 6 C -0.031 4.031 7 N -0.370 5.370 8 C 0.295 3.705 9 O -0.473 6.473 10 C -0.159 4.159 11 C 0.005 3.995 12 C -0.580 4.580 13 H 0.096 0.904 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.799 3.201 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.178 1.178 20 N -0.232 5.232 21 C -0.083 4.083 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.198 4.198 25 C -0.141 4.141 26 C -0.082 4.082 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.259 0.741 37 H 0.123 0.877 38 H 0.124 0.876 39 H -0.001 1.001 40 H -0.001 1.001 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.103 0.897 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 18.825 23.327 0.898 29.989 hybrid contribution -1.106 -1.753 0.066 2.074 sum 17.719 21.574 0.964 27.934 Atomic orbital electron populations 1.22218 0.94819 1.02224 1.03230 1.21107 0.95719 0.97433 0.95907 1.21613 1.01739 0.93696 1.01354 1.22046 0.88677 0.90675 1.00690 0.88115 1.22049 0.81130 0.99586 1.00376 1.46288 1.08326 1.09178 1.73209 1.21434 0.91657 0.82690 0.74671 1.90651 1.66374 1.40035 1.50200 1.21648 0.89487 1.00034 1.04723 1.18680 0.95227 0.91051 0.94549 1.21718 0.93093 0.94187 1.49008 0.90443 1.26171 1.04163 0.95575 0.94689 1.70182 1.37919 0.99512 1.50286 0.85300 0.78303 0.77691 0.78825 1.19654 1.21230 1.17789 1.62338 1.02855 1.55318 1.02673 1.22216 0.95862 0.95246 0.94953 1.21597 0.93127 1.02326 0.97116 1.21206 0.96033 0.99071 0.95371 1.21754 0.94244 1.01981 1.01808 1.21588 0.92720 1.01496 0.98260 1.22233 0.97064 0.97510 0.91400 0.90841 0.91376 0.92790 0.92297 0.91836 0.92967 0.92469 0.93760 0.93374 0.74076 0.87698 0.87603 1.00098 1.00128 0.92867 0.96546 0.90151 0.90421 0.91315 0.93102 0.92502 0.92676 0.91943 0.90434 0.90992 0.89746 0.96371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 7.62 71.98 0.55 -2.05 16 2 C -0.08 -1.34 2.11 -10.80 -0.02 -1.36 16 3 C -0.13 -1.70 8.96 71.98 0.64 -1.06 16 4 C 0.09 1.57 1.58 44.91 0.07 1.64 16 5 H 0.10 1.59 7.96 -2.38 -0.02 1.57 16 6 C 0.09 2.45 4.08 86.38 0.35 2.80 16 7 N -0.71 -19.77 3.84 -463.06 -1.78 -21.55 16 8 C 0.51 20.18 7.83 87.66 0.69 20.86 16 9 O -0.59 -30.23 15.98 -3.04 -0.05 -30.28 16 10 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 11 C 0.04 2.41 4.26 29.85 0.13 2.54 16 12 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 13 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 14 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 15 N -0.94 -60.32 13.29 21.45 0.28 -60.04 16 16 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 20 N -0.51 -8.58 3.58 -871.12 -3.12 -11.70 16 21 C 0.05 0.82 4.56 86.33 0.39 1.21 16 22 C -0.10 -1.54 5.38 30.65 0.16 -1.37 16 23 C -0.10 -1.44 2.79 -10.71 -0.03 -1.47 16 24 C -0.14 -1.64 9.20 71.98 0.66 -0.98 16 25 C -0.10 -1.43 5.38 30.65 0.16 -1.27 16 26 C 0.05 0.77 5.15 86.33 0.44 1.21 16 27 H 0.07 0.90 7.68 -2.39 -0.02 0.88 16 28 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 29 H 0.05 1.06 5.75 -2.39 -0.01 1.05 16 30 H 0.06 1.10 6.68 -2.39 -0.02 1.09 16 31 H 0.06 0.92 7.45 -2.39 -0.02 0.90 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.04 1.31 6.48 -2.39 -0.02 1.29 16 35 H 0.05 1.45 6.97 -2.39 -0.02 1.43 16 36 H 0.42 8.66 5.71 -92.71 -0.53 8.13 16 37 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 39 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 40 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 41 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.02 0.37 6.78 -2.39 -0.02 0.36 16 43 H 0.08 1.42 6.34 -2.38 -0.02 1.41 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 53 H 0.02 0.38 6.70 -2.39 -0.02 0.37 16 Total: -1.00 -75.67 397.25 2.76 -72.92 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.32 Total: 18.98 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 5.07 Total: -14.91 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.62 Total: -93.30 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.67 2.76 -72.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360003040.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.884 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds