Wall clock time and date at job start Fri Apr 10 2020 22:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46847 * 2 1 4 4 C 1.53005 * 109.47107 * 240.00192 * 2 1 3 5 5 C 1.52996 * 109.47190 * 120.00244 * 2 1 3 6 6 C 1.52999 * 109.47070 * 59.99804 * 5 2 1 7 7 C 1.53006 * 109.46706 * 179.97438 * 6 5 2 8 8 C 1.50702 * 109.46847 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99970 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00169 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47280 * 179.97438 * 11 10 8 13 13 C 1.53349 * 109.42091 * 295.12817 * 12 11 10 14 14 C 1.53196 * 109.15353 * 178.67328 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46279 * 174.99967 * 12 11 10 26 26 H 1.08996 * 109.47068 * 299.99854 * 1 2 3 27 27 H 1.08998 * 109.46843 * 59.99677 * 1 2 3 28 28 H 1.08995 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46697 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46963 * 299.99567 * 3 2 1 31 31 H 1.08996 * 109.47167 * 60.00207 * 3 2 1 32 32 H 1.08993 * 109.46759 * 300.00196 * 4 2 1 33 33 H 1.09003 * 109.46866 * 59.99929 * 4 2 1 34 34 H 1.08998 * 109.46878 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47177 * 299.99763 * 5 2 1 36 36 H 1.08998 * 109.47266 * 180.02562 * 5 2 1 37 37 H 1.09000 * 109.46923 * 60.00634 * 6 5 2 38 38 H 1.08997 * 109.47208 * 299.99825 * 6 5 2 39 39 H 1.09000 * 109.46810 * 60.00690 * 7 6 5 40 40 H 1.08997 * 109.47247 * 299.99926 * 7 6 5 41 41 H 0.96999 * 119.99862 * 0.02562 * 10 8 7 42 42 H 1.08996 * 109.47191 * 59.99822 * 11 10 8 43 43 H 1.08998 * 109.47122 * 300.00127 * 11 10 8 44 44 H 1.09003 * 109.46065 * 55.02896 * 12 11 10 45 45 H 1.08998 * 109.68701 * 58.70817 * 13 12 11 46 46 H 1.09000 * 109.47234 * 298.50885 * 13 12 11 47 47 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 48 48 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 49 49 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 50 50 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 51 51 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 52 52 H 1.08992 * 109.49619 * 61.43154 * 25 12 11 53 53 H 1.08999 * 109.52313 * 301.35168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2491 7 6 2.0406 -2.8852 2.4981 8 6 1.5378 -4.3058 2.4984 9 8 0.8401 -4.7024 1.5890 10 7 1.8633 -5.1357 3.5092 11 6 1.3749 -6.5168 3.5092 12 6 1.8853 -7.2383 4.7582 13 6 3.4139 -7.3449 4.6965 14 6 3.9209 -8.0384 5.9649 15 7 3.2299 -9.3267 6.1114 16 6 3.9415 -10.4869 6.2625 17 1 4.9328 -10.5709 5.8423 18 6 3.3887 -11.5548 6.9560 19 7 2.3510 -11.3624 7.7424 20 14 4.1177 -13.2650 6.7730 21 1 5.5362 -13.2480 7.2118 22 1 3.3512 -14.2219 7.6109 23 1 4.0446 -13.6846 5.3504 24 6 1.7609 -9.3467 6.0919 25 6 1.2749 -8.6402 4.8225 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.1301 -0.7208 -1.2495 35 1 1.6768 -0.2075 2.1392 36 1 3.1300 -0.7209 1.2494 37 1 1.8934 -2.6776 0.3592 38 1 0.4401 -2.1637 1.2492 39 1 1.6776 -2.3715 3.3883 40 1 3.1306 -2.8852 2.4976 41 1 2.4209 -4.8184 4.2367 42 1 1.7382 -7.0307 2.6193 43 1 0.2849 -6.5168 3.5092 44 1 1.5968 -6.6756 5.6460 45 1 3.8490 -6.3479 4.6283 46 1 3.7024 -7.9289 3.8225 47 1 3.7129 -7.4116 6.8320 48 1 4.9948 -8.2067 5.8849 49 1 1.9646 -12.1087 8.2267 50 1 1.4095 -10.3784 6.0932 51 1 1.3768 -8.8288 6.9708 52 1 1.5834 -9.2118 3.9472 53 1 0.1878 -8.5637 4.8423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362415943.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:16 Heat of formation + Delta-G solvation = -63.271333 kcal Electronic energy + Delta-G solvation = -25889.370619 eV Core-core repulsion = 22373.717615 eV Total energy + Delta-G solvation = -3515.653004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.85071 -38.39137 -37.73147 -34.94713 -33.32786 -32.76600 -30.80283 -29.74987 -28.06230 -27.57170 -27.56666 -26.33781 -24.00699 -22.53180 -22.05602 -20.99213 -20.24849 -19.12114 -18.91419 -17.04598 -16.62035 -16.08605 -15.88068 -15.01839 -15.00581 -14.76403 -14.39372 -14.35288 -13.92880 -13.67210 -13.55052 -13.39241 -13.16671 -12.85051 -12.58326 -12.38087 -12.28495 -12.02268 -11.99989 -11.95082 -11.91559 -11.76094 -11.33854 -11.12845 -10.98285 -10.79744 -10.72466 -10.71660 -10.63271 -10.51025 -10.25944 -10.22262 -9.97898 -9.79725 -9.54275 -9.41806 -8.95130 -8.46488 -6.66921 -5.78987 -3.21478 2.67902 3.25551 3.38365 3.44192 3.45631 4.37895 4.48182 4.49548 4.49733 4.73773 4.84627 4.91882 5.12421 5.21080 5.22835 5.24795 5.27138 5.37991 5.40744 5.42593 5.43914 5.45331 5.48599 5.55892 5.61244 5.61762 5.68659 5.78913 5.85825 5.87531 5.94589 5.97544 6.00670 6.05152 6.15498 6.16296 6.22685 6.31866 6.43819 6.49760 6.60064 6.69391 6.76350 6.81130 6.97562 7.36810 7.56051 7.65786 7.79208 8.26957 8.45504 9.21607 9.85125 10.41895 11.29534 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.041139 B = 0.001925 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.449946 B =14542.131644 C =14671.940127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.107 4.107 7 C -0.142 4.142 8 C 0.507 3.493 9 O -0.547 6.547 10 N -0.727 5.727 11 C 0.123 3.877 12 C -0.090 4.090 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.400 0.600 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.254 0.746 50 H 0.087 0.913 51 H 0.018 0.982 52 H 0.057 0.943 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 23.288 -12.160 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.182 4.182 8 C 0.294 3.706 9 O -0.425 6.425 10 N -0.378 5.378 11 C -0.001 4.001 12 C -0.109 4.109 13 C -0.166 4.166 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.046 3.954 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.234 0.766 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.106 0.894 51 H 0.036 0.964 52 H 0.076 0.924 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.119 22.847 -12.693 26.222 hybrid contribution 0.623 -0.773 0.405 1.072 sum -1.496 22.075 -12.288 25.309 Atomic orbital electron populations 1.21947 0.94617 1.02256 1.01426 1.20541 0.95776 0.95206 0.95508 1.21877 1.00875 0.95513 1.01588 1.21949 1.00856 1.00763 0.96693 1.21666 1.00518 0.95208 0.97282 1.21476 1.01770 0.94321 0.96952 1.21710 1.02542 0.92767 1.01177 1.20742 0.80324 0.87787 0.81766 1.90691 1.38175 1.77625 1.35968 1.46157 1.53615 1.12874 1.25196 1.21558 0.98685 0.80477 0.99340 1.21359 0.96476 0.97222 0.95799 1.22127 0.94420 0.99084 1.00979 1.20885 0.95906 0.88090 0.93259 1.44033 1.01314 1.01551 1.84590 1.19138 1.00494 0.90559 1.28060 0.91819 1.25045 0.98870 0.99263 0.96475 1.70018 1.25663 1.30348 1.28744 0.86372 0.78482 0.84340 0.77590 1.20903 1.21632 1.21035 1.20763 0.83378 1.00408 0.90894 1.22173 0.98364 0.94406 1.02326 0.92795 0.92964 0.91979 0.92753 0.92810 0.92762 0.91969 0.92964 0.92777 0.91956 0.91930 0.90918 0.90935 0.89128 0.89070 0.76568 0.91761 0.91955 0.91378 0.93454 0.92227 0.96639 0.92933 0.93587 0.89435 0.96434 0.92420 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.12 37.16 0.30 -0.72 16 2 C -0.07 -0.48 0.80 -154.50 -0.12 -0.60 16 3 C -0.14 -0.84 8.47 37.16 0.31 -0.53 16 4 C -0.15 -1.03 8.12 37.16 0.30 -0.73 16 5 C -0.11 -0.75 4.27 -26.73 -0.11 -0.86 16 6 C -0.11 -0.93 3.80 -26.73 -0.10 -1.04 16 7 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 8 C 0.51 6.36 7.83 -10.99 -0.09 6.27 16 9 O -0.55 -9.07 15.98 5.56 0.09 -8.98 16 10 N -0.73 -8.66 5.27 -60.30 -0.32 -8.97 16 11 C 0.12 1.75 5.07 -4.05 -0.02 1.73 16 12 C -0.09 -1.40 2.19 -90.42 -0.20 -1.60 16 13 C -0.13 -2.06 5.27 -26.45 -0.14 -2.20 16 14 C 0.15 2.94 6.51 -3.71 -0.02 2.91 16 15 N -0.59 -14.62 2.99 -172.32 -0.52 -15.13 16 16 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 17 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.10 11.20 55.49 0.62 -25.48 16 20 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 25 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.72 6.39 -51.93 -0.33 0.39 16 38 H 0.07 0.72 6.39 -51.93 -0.33 0.38 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 3.85 7.65 -40.82 -0.31 3.54 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 53 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -31.01 402.99 -9.84 -40.85 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -10.32 Total: -0.58 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.44 Total: -4.41 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.21 Total: -49.59 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.01 -9.84 -40.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362415943.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.422 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds