Wall clock time and date at job start Fri Apr 10 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46847 * 2 1 4 4 C 1.53005 * 109.47107 * 240.00192 * 2 1 3 5 5 C 1.52996 * 109.47190 * 120.00244 * 2 1 3 6 6 C 1.52999 * 109.47070 * 59.99804 * 5 2 1 7 7 C 1.53006 * 109.46706 * 179.97438 * 6 5 2 8 8 C 1.50702 * 109.46847 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99970 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00169 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47280 * 179.97438 * 11 10 8 13 13 C 1.53349 * 109.42091 * 295.12817 * 12 11 10 14 14 C 1.53196 * 109.15353 * 178.67328 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46279 * 174.99967 * 12 11 10 26 26 H 1.08996 * 109.47068 * 299.99854 * 1 2 3 27 27 H 1.08998 * 109.46843 * 59.99677 * 1 2 3 28 28 H 1.08995 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46697 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46963 * 299.99567 * 3 2 1 31 31 H 1.08996 * 109.47167 * 60.00207 * 3 2 1 32 32 H 1.08993 * 109.46759 * 300.00196 * 4 2 1 33 33 H 1.09003 * 109.46866 * 59.99929 * 4 2 1 34 34 H 1.08998 * 109.46878 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47177 * 299.99763 * 5 2 1 36 36 H 1.08998 * 109.47266 * 180.02562 * 5 2 1 37 37 H 1.09000 * 109.46923 * 60.00634 * 6 5 2 38 38 H 1.08997 * 109.47208 * 299.99825 * 6 5 2 39 39 H 1.09000 * 109.46810 * 60.00690 * 7 6 5 40 40 H 1.08997 * 109.47247 * 299.99926 * 7 6 5 41 41 H 0.96999 * 119.99862 * 0.02562 * 10 8 7 42 42 H 1.08996 * 109.47191 * 59.99822 * 11 10 8 43 43 H 1.08998 * 109.47122 * 300.00127 * 11 10 8 44 44 H 1.09003 * 109.46065 * 55.02896 * 12 11 10 45 45 H 1.08998 * 109.68701 * 58.70817 * 13 12 11 46 46 H 1.09000 * 109.47234 * 298.50885 * 13 12 11 47 47 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 48 48 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 49 49 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 50 50 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 51 51 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 52 52 H 1.08992 * 109.49619 * 61.43154 * 25 12 11 53 53 H 1.08999 * 109.52313 * 301.35168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2491 7 6 2.0406 -2.8852 2.4981 8 6 1.5378 -4.3058 2.4984 9 8 0.8401 -4.7024 1.5890 10 7 1.8633 -5.1357 3.5092 11 6 1.3749 -6.5168 3.5092 12 6 1.8853 -7.2383 4.7582 13 6 3.4139 -7.3449 4.6965 14 6 3.9209 -8.0384 5.9649 15 7 3.2299 -9.3267 6.1114 16 6 3.9415 -10.4869 6.2625 17 1 4.9328 -10.5709 5.8423 18 6 3.3887 -11.5548 6.9560 19 7 2.3510 -11.3624 7.7424 20 14 4.1177 -13.2650 6.7730 21 1 5.5362 -13.2480 7.2118 22 1 3.3512 -14.2219 7.6109 23 1 4.0446 -13.6846 5.3504 24 6 1.7609 -9.3467 6.0919 25 6 1.2749 -8.6402 4.8225 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.1301 -0.7208 -1.2495 35 1 1.6768 -0.2075 2.1392 36 1 3.1300 -0.7209 1.2494 37 1 1.8934 -2.6776 0.3592 38 1 0.4401 -2.1637 1.2492 39 1 1.6776 -2.3715 3.3883 40 1 3.1306 -2.8852 2.4976 41 1 2.4209 -4.8184 4.2367 42 1 1.7382 -7.0307 2.6193 43 1 0.2849 -6.5168 3.5092 44 1 1.5968 -6.6756 5.6460 45 1 3.8490 -6.3479 4.6283 46 1 3.7024 -7.9289 3.8225 47 1 3.7129 -7.4116 6.8320 48 1 4.9948 -8.2067 5.8849 49 1 1.9646 -12.1087 8.2267 50 1 1.4095 -10.3784 6.0932 51 1 1.3768 -8.8288 6.9708 52 1 1.5834 -9.2118 3.9472 53 1 0.1878 -8.5637 4.8423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362415943.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:15 Heat of formation + Delta-G solvation = -80.295784 kcal Electronic energy + Delta-G solvation = -25890.108854 eV Core-core repulsion = 22373.717615 eV Total energy + Delta-G solvation = -3516.391240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86866 -39.41995 -38.80746 -36.38650 -34.47650 -33.94896 -32.49510 -31.40701 -29.09110 -28.12023 -28.10631 -27.59842 -25.63408 -23.88751 -23.20538 -22.40731 -21.26860 -20.61131 -19.50429 -18.70306 -17.81683 -16.99869 -16.90788 -16.71547 -15.88775 -15.70654 -15.55087 -15.30993 -15.14743 -14.95442 -14.84221 -14.58152 -14.47260 -14.04082 -13.80926 -13.49338 -13.35360 -13.11219 -12.98352 -12.80101 -12.63121 -12.55298 -12.52830 -12.49286 -12.43182 -12.27788 -12.02671 -11.84703 -11.70086 -11.62025 -11.38856 -11.27587 -11.25088 -11.21985 -11.10027 -10.73930 -10.51968 -10.02628 -8.66447 -7.87199 -5.32110 1.45935 1.48690 1.55087 1.72407 2.30040 2.51300 3.27198 3.71647 3.78005 3.83777 3.87073 3.94906 3.97014 4.06205 4.10028 4.23797 4.32227 4.51904 4.54154 4.65639 4.68972 4.71750 4.72886 4.73851 4.78724 4.88052 4.88901 4.90549 4.93675 4.97678 5.01328 5.03002 5.12434 5.14205 5.15044 5.26873 5.26985 5.28817 5.30295 5.38375 5.41055 5.49937 5.51195 5.55784 5.59730 5.64418 5.65943 5.79105 6.40160 6.63936 7.16012 7.33555 7.88553 8.39178 9.18784 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.041139 B = 0.001925 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.449946 B =14542.131644 C =14671.940127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.103 4.103 6 C -0.104 4.104 7 C -0.133 4.133 8 C 0.504 3.496 9 O -0.593 6.593 10 N -0.718 5.718 11 C 0.136 3.864 12 C -0.077 4.077 13 C -0.113 4.113 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.263 4.263 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.281 1.281 24 C 0.177 3.823 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.415 0.585 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.019 0.981 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.050 0.950 51 H -0.001 1.001 52 H 0.048 0.952 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 25.540 -12.534 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.173 4.173 8 C 0.292 3.708 9 O -0.474 6.474 10 N -0.370 5.370 11 C 0.011 3.989 12 C -0.096 4.096 13 C -0.152 4.152 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.393 4.393 17 H 0.082 0.918 18 C -0.247 4.247 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.207 1.207 24 C 0.051 3.949 25 C -0.163 4.163 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.252 0.748 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.018 0.982 52 H 0.066 0.934 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.928 25.140 -13.061 28.345 hybrid contribution 0.265 -1.441 0.520 1.554 sum -0.664 23.699 -12.542 26.821 Atomic orbital electron populations 1.21935 0.95030 1.01418 1.01780 1.20571 0.95468 0.95854 0.95360 1.21846 1.01130 0.94690 1.01905 1.21938 1.01082 0.99999 0.97171 1.21622 1.01007 0.93773 0.97618 1.21415 1.00758 0.95520 0.96541 1.21753 1.03860 0.89752 1.01915 1.21493 0.79338 0.89158 0.80779 1.90680 1.40300 1.78680 1.37724 1.46035 1.53533 1.11761 1.25690 1.21208 0.98324 0.81647 0.97680 1.21188 0.95932 0.95488 0.96978 1.21981 0.94683 1.00495 0.98074 1.21079 0.95729 0.86521 0.95274 1.44318 1.01828 1.02611 1.84832 1.19468 1.00670 0.91900 1.27291 0.91784 1.25783 0.99632 1.02635 0.96632 1.70167 1.27116 1.30877 1.29882 0.85380 0.77933 0.80022 0.77360 1.20014 1.22018 1.20674 1.20563 0.83162 0.98611 0.92520 1.21981 0.99508 0.95731 0.99049 0.92297 0.92770 0.93389 0.92304 0.92735 0.92258 0.93400 0.92764 0.92351 0.90910 0.90967 0.92690 0.92601 0.86600 0.86650 0.74821 0.93060 0.92433 0.90429 0.89429 0.93357 0.96294 0.93039 0.94144 0.93161 0.98248 0.93357 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.12 71.98 0.58 -1.31 16 2 C -0.07 -0.87 0.80 -52.18 -0.04 -0.91 16 3 C -0.14 -1.35 8.47 71.98 0.61 -0.74 16 4 C -0.14 -1.93 8.12 71.98 0.58 -1.34 16 5 C -0.10 -1.15 4.27 30.59 0.13 -1.02 16 6 C -0.10 -1.66 3.80 30.60 0.12 -1.54 16 7 C -0.13 -1.83 5.70 29.85 0.17 -1.66 16 8 C 0.50 11.55 7.83 87.66 0.69 12.24 16 9 O -0.59 -19.31 15.98 -3.04 -0.05 -19.35 16 10 N -0.72 -15.00 5.27 -463.09 -2.44 -17.44 16 11 C 0.14 3.60 5.07 86.38 0.44 4.04 16 12 C -0.08 -2.26 2.19 -10.66 -0.02 -2.28 16 13 C -0.11 -3.41 5.27 30.78 0.16 -3.25 16 14 C 0.14 5.46 6.51 86.36 0.56 6.02 16 15 N -0.61 -30.41 2.99 -699.11 -2.09 -32.51 16 16 C -0.26 -14.50 9.58 84.03 0.81 -13.70 16 17 H 0.06 3.45 7.88 -2.91 -0.02 3.42 16 18 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 19 N -0.93 -55.46 11.20 21.65 0.24 -55.22 16 20 Si 0.96 45.14 29.59 68.60 2.03 47.17 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.18 8.47 5.30 86.36 0.46 8.93 16 25 C -0.12 -4.51 5.36 30.67 0.16 -4.35 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.76 6.43 -2.39 -0.02 0.74 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.77 6.43 -2.39 -0.02 0.75 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 1.07 6.39 -2.39 -0.02 1.05 16 38 H 0.06 1.07 6.39 -2.39 -0.02 1.06 16 39 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.41 6.25 7.65 -92.71 -0.71 5.54 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 1.96 7.16 -2.39 -0.02 1.94 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 49 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 50 H 0.05 2.76 6.06 -2.39 -0.01 2.75 16 51 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 52 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.14 402.99 3.65 -65.49 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.14 Total: 15.21 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.82 Total: -3.35 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.29 Total: -105.17 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.14 3.65 -65.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362415943.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.803 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds