Wall clock time and date at job start Fri Apr 10 2020 22:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99361 * 45.78870 * 12 11 10 14 14 C 1.53045 * 109.52212 * 185.84617 * 13 12 11 15 15 C 1.53126 * 109.27267 * 300.82193 * 14 13 12 16 16 C 1.53005 * 109.51758 * 177.56142 * 15 14 13 17 17 C 1.52991 * 109.47447 * 65.31772 * 16 15 14 18 18 N 1.46896 * 109.47361 * 179.97438 * 17 16 15 19 19 C 1.47006 * 111.00283 * 293.63530 * 18 17 16 20 20 C 1.53099 * 109.26162 * 177.60346 * 19 18 17 21 21 O 1.43022 * 109.25321 * 56.84933 * 20 19 18 22 22 C 1.43012 * 113.74030 * 301.32868 * 21 20 19 23 23 C 1.47018 * 111.00281 * 169.99492 * 18 17 16 24 24 C 1.53111 * 109.16377 * 57.65554 * 15 14 13 25 25 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 1.09000 * 109.46861 * 305.85669 * 13 12 11 34 34 H 1.08996 * 109.46450 * 65.82852 * 13 12 11 35 35 H 1.08996 * 109.50378 * 180.88718 * 14 13 12 36 36 H 1.08993 * 109.50521 * 60.75626 * 14 13 12 37 37 H 1.09003 * 109.52363 * 297.74473 * 15 14 13 38 38 H 1.09009 * 109.46577 * 185.31556 * 16 15 14 39 39 H 1.09000 * 109.46961 * 305.31068 * 16 15 14 40 40 H 1.09005 * 109.47225 * 299.99978 * 17 16 15 41 41 H 1.09000 * 109.47615 * 59.99696 * 17 16 15 42 42 H 1.09003 * 109.50773 * 297.53871 * 19 18 17 43 43 H 1.09005 * 109.50717 * 57.67099 * 19 18 17 44 44 H 1.08993 * 109.50987 * 296.91741 * 20 19 18 45 45 H 1.08997 * 109.54325 * 176.79911 * 20 19 18 46 46 H 1.09004 * 109.50477 * 298.73702 * 22 21 20 47 47 H 1.09000 * 109.54155 * 178.63283 * 22 21 20 48 48 H 1.08999 * 109.50689 * 302.33174 * 23 18 17 49 49 H 1.09002 * 109.50293 * 62.41642 * 23 18 17 50 50 H 1.08993 * 109.50713 * 182.40312 * 24 15 14 51 51 H 1.08998 * 109.50742 * 62.28519 * 24 15 14 52 52 H 1.09001 * 109.45873 * 294.17853 * 25 12 11 53 53 H 1.08993 * 109.45967 * 54.14426 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0410 -4.0218 0.0004 13 6 5.3151 -4.8369 -0.9820 14 6 5.7475 -6.2993 -0.8528 15 6 7.2566 -6.4030 -1.0910 16 6 7.7052 -7.8537 -0.9033 17 6 7.0710 -8.7279 -1.9868 18 7 7.5022 -10.1206 -1.8069 19 6 8.9446 -10.2615 -2.0531 20 6 9.3613 -11.7123 -1.7971 21 8 8.5832 -12.5798 -2.6262 22 6 7.1736 -12.4692 -2.4122 23 6 6.7347 -11.0261 -2.6744 24 6 7.9867 -5.5075 -0.0863 25 6 7.4893 -4.0681 -0.2377 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6810 0.8905 29 1 3.6577 -3.1507 0.8897 30 1 3.6584 -3.1504 -0.8902 31 1 5.9147 -2.1229 -0.8901 32 1 5.9147 -2.1231 0.8899 33 1 4.2435 -4.7577 -0.7989 34 1 5.5390 -4.4794 -1.9870 35 1 5.2202 -6.9014 -1.5926 36 1 5.5114 -6.6616 0.1477 37 1 7.4886 -6.0773 -2.1050 38 1 8.7911 -7.9109 -0.9797 39 1 7.3910 -8.2069 0.0789 40 1 5.9851 -8.6707 -1.9104 41 1 7.3852 -8.3747 -2.9689 42 1 9.1650 -9.9967 -3.0873 43 1 9.4946 -9.6012 -1.3825 44 1 9.1908 -11.9605 -0.7496 45 1 10.4184 -11.8351 -2.0329 46 1 6.9394 -12.7394 -1.3825 47 1 6.6478 -13.1389 -3.0928 48 1 5.6715 -10.9238 -2.4574 49 1 6.9191 -10.7729 -3.7185 50 1 9.0590 -5.5440 -0.2784 51 1 7.7858 -5.8573 0.9263 52 1 7.7030 -3.7141 -1.2462 53 1 7.9968 -3.4304 0.4860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363506473.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:19 Heat of formation + Delta-G solvation = -80.098194 kcal Electronic energy + Delta-G solvation = -25967.296286 eV Core-core repulsion = 22450.913614 eV Total energy + Delta-G solvation = -3516.382671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70785 -40.14777 -37.61147 -36.35268 -35.07714 -33.42875 -32.17330 -31.76890 -30.94205 -28.76428 -27.28523 -25.11916 -24.90635 -24.34354 -23.36930 -21.93037 -21.31399 -21.27036 -20.56878 -18.90189 -17.61243 -17.14948 -16.92128 -16.50579 -16.18604 -16.11564 -16.00092 -15.82064 -15.70614 -15.22636 -15.13593 -14.93603 -14.73873 -14.46402 -13.94280 -13.72223 -13.67540 -13.41601 -13.17168 -12.98235 -12.84323 -12.67972 -12.41857 -12.36349 -12.26615 -12.11713 -11.88478 -11.81981 -11.61188 -11.58351 -11.46006 -11.40812 -11.34331 -11.03158 -10.85111 -10.76315 -10.63803 -9.40590 -9.20865 -8.30260 -6.34519 1.34680 1.37072 1.49427 2.35560 2.72608 2.96480 2.99801 3.04773 3.72871 3.85639 3.88787 3.94310 4.02097 4.04549 4.16203 4.19070 4.21713 4.29133 4.35686 4.38961 4.47443 4.52761 4.54271 4.58641 4.63891 4.65308 4.69681 4.73487 4.75503 4.81115 4.87527 4.89707 4.94815 4.98665 4.98945 5.03397 5.05045 5.10054 5.17978 5.23052 5.32774 5.33820 5.48701 5.56690 5.59974 5.65054 5.96335 5.98803 6.14843 6.17443 6.27364 6.29809 6.73358 7.29894 8.86622 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.001969 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.385618 B =14215.457805 C =14962.197801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.094 4.094 11 C 0.064 3.936 12 N -0.546 5.546 13 C 0.046 3.954 14 C -0.104 4.104 15 C -0.080 4.080 16 C -0.096 4.096 17 C 0.056 3.944 18 N -0.545 5.545 19 C 0.016 3.984 20 C 0.060 3.940 21 O -0.408 6.408 22 C 0.062 3.938 23 C 0.016 3.984 24 C -0.102 4.102 25 C 0.052 3.948 26 H 0.266 0.734 27 H 0.017 0.983 28 H 0.021 0.979 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.061 0.939 47 H 0.111 0.889 48 H 0.094 0.906 49 H 0.035 0.965 50 H 0.083 0.917 51 H 0.067 0.933 52 H 0.029 0.971 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.486 -22.344 -4.495 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.132 4.132 11 C -0.064 4.064 12 N -0.271 5.271 13 C -0.081 4.081 14 C -0.142 4.142 15 C -0.100 4.100 16 C -0.134 4.134 17 C -0.071 4.071 18 N -0.270 5.270 19 C -0.112 4.112 20 C -0.016 4.016 21 O -0.327 6.327 22 C -0.015 4.015 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.075 4.075 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.129 0.871 48 H 0.112 0.888 49 H 0.053 0.947 50 H 0.102 0.898 51 H 0.086 0.914 52 H 0.047 0.953 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.252 -22.710 -3.679 32.710 hybrid contribution -0.465 1.726 -1.516 2.344 sum 22.787 -20.985 -5.195 31.410 Atomic orbital electron populations 1.70078 1.08324 1.28170 1.52681 1.26079 0.95698 1.03707 0.94119 0.85601 0.79517 0.77983 0.79197 1.19165 1.20874 1.16891 1.21491 0.92181 0.93034 1.50356 0.95249 1.19498 0.93865 0.94983 0.96455 1.21432 0.93989 0.97057 1.00708 1.22077 0.94758 0.89031 1.00498 1.62021 1.04655 1.10260 1.50133 1.22215 0.98732 0.94476 0.92712 1.21642 0.96151 0.94118 1.02262 1.21129 0.94574 0.95120 0.99131 1.21482 1.00447 0.92495 0.98953 1.22186 1.00687 0.86771 0.97450 1.62248 1.04195 1.06575 1.54030 1.22868 0.89236 0.98760 1.00379 1.22805 0.96216 0.87662 0.94932 1.87955 1.18364 1.62930 1.63464 1.22771 0.81103 0.95317 1.02259 1.22816 0.99590 0.93858 0.94937 1.21575 0.99737 0.92852 0.99840 1.22170 0.87299 0.98592 0.99478 0.92499 0.96479 0.96072 0.93279 0.93150 0.95143 0.90617 0.91606 0.95684 0.90889 0.91674 0.91735 0.91072 0.91432 0.90517 0.95139 0.94773 0.88225 0.92070 0.86972 0.92073 0.87057 0.88793 0.94681 0.89841 0.91436 0.95311 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -31.58 9.66 25.60 0.25 -31.33 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.80 4.40 30.59 0.13 -3.66 16 11 C 0.06 2.06 5.27 86.30 0.46 2.52 16 12 N -0.55 -15.28 4.81 -896.37 -4.31 -19.58 16 13 C 0.05 1.25 4.85 86.33 0.42 1.67 16 14 C -0.10 -2.15 5.08 30.65 0.16 -2.00 16 15 C -0.08 -1.33 2.25 -10.71 -0.02 -1.36 16 16 C -0.10 -1.33 4.62 30.59 0.14 -1.19 16 17 C 0.06 0.82 4.72 86.30 0.41 1.23 16 18 N -0.55 -8.07 4.73 -895.24 -4.23 -12.30 16 19 C 0.02 0.20 5.44 86.32 0.47 0.67 16 20 C 0.06 0.76 7.01 72.02 0.50 1.26 16 21 O -0.41 -6.84 10.83 -148.98 -1.61 -8.45 16 22 C 0.06 0.81 7.01 72.01 0.50 1.32 16 23 C 0.02 0.22 5.64 86.31 0.49 0.71 16 24 C -0.10 -1.74 5.38 30.64 0.16 -1.58 16 25 C 0.05 1.14 5.43 86.33 0.47 1.61 16 26 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 28 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.06 6.21 -2.39 -0.01 2.04 16 31 H 0.03 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.06 5.81 -2.39 -0.01 2.04 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 1.36 6.70 -2.39 -0.02 1.34 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.85 6.52 -2.38 -0.02 0.84 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.17 6.53 -2.38 -0.02 1.16 16 41 H 0.03 0.46 8.12 -2.39 -0.02 0.45 16 42 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 1.05 6.38 -2.38 -0.02 1.03 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 48 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 49 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 Total: -1.00 -68.40 392.57 -2.07 -70.48 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.78 Total: 13.56 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 5.12 Total: -30.00 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -8.24 Total: -92.37 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -1.61 Total: -8.45 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -68.40 -2.07 -70.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363506473.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.623 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds