Wall clock time and date at job start Fri Apr 10 2020 22:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47094 * 2 1 4 4 C 1.52993 * 109.47252 * 239.99545 * 2 1 3 5 5 C 1.53008 * 109.47225 * 185.00276 * 4 2 1 6 6 C 1.52997 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46651 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46766 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99902 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99538 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99577 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46805 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.49725 * 304.93399 * 12 11 10 14 14 C 1.53040 * 109.49430 * 184.83350 * 12 11 10 15 15 C 1.53040 * 109.53584 * 178.68364 * 14 12 11 16 16 C 1.53190 * 109.31205 * 61.36566 * 15 14 12 17 17 N 1.46925 * 108.77751 * 305.36603 * 16 15 14 18 18 C 1.36938 * 120.62731 * 233.63103 * 17 16 15 19 19 H 1.08001 * 119.99933 * 151.80792 * 18 17 16 20 20 C 1.38810 * 119.99945 * 331.80303 * 18 17 16 21 21 N 1.31620 * 120.00591 * 343.09151 * 20 18 17 22 22 Si 1.86803 * 119.99722 * 163.09611 * 20 18 17 23 23 H 1.48499 * 109.47519 * 59.99803 * 22 20 18 24 24 H 1.48500 * 109.47112 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46771 * 299.99726 * 22 20 18 26 26 C 1.46919 * 118.73599 * 53.60680 * 17 16 15 27 27 H 1.08999 * 109.46495 * 60.00322 * 1 2 3 28 28 H 1.08995 * 109.47236 * 300.00237 * 1 2 3 29 29 H 1.08997 * 109.46599 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46607 * 119.99569 * 2 1 3 31 31 H 1.08996 * 109.46804 * 299.99608 * 3 2 1 32 32 H 1.08995 * 109.47273 * 59.99785 * 3 2 1 33 33 H 1.08999 * 109.46596 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47382 * 304.99973 * 4 2 1 35 35 H 1.09001 * 109.47090 * 65.00111 * 4 2 1 36 36 H 1.09002 * 109.46693 * 300.00119 * 5 4 2 37 37 H 1.08992 * 109.47077 * 60.00050 * 5 4 2 38 38 H 1.09002 * 109.47338 * 299.99502 * 6 5 4 39 39 H 1.09001 * 109.47409 * 59.99808 * 6 5 4 40 40 H 1.08996 * 109.47326 * 299.99633 * 7 6 5 41 41 H 1.09001 * 109.47226 * 59.99873 * 7 6 5 42 42 H 0.97000 * 120.00480 * 359.97438 * 10 8 7 43 43 H 1.08996 * 109.46814 * 299.99481 * 11 10 8 44 44 H 1.08993 * 109.46841 * 59.99779 * 11 10 8 45 45 H 1.08994 * 109.46094 * 298.70864 * 14 12 11 46 46 H 1.09001 * 109.45639 * 58.66449 * 14 12 11 47 47 H 1.08999 * 109.49793 * 301.41659 * 15 14 12 48 48 H 1.08996 * 109.49842 * 181.32081 * 15 14 12 49 49 H 1.09007 * 109.58678 * 185.57361 * 16 15 14 50 50 H 1.08999 * 109.69959 * 65.22493 * 16 15 14 51 51 H 0.96990 * 120.00355 * 180.02562 * 21 20 18 52 52 H 1.09004 * 109.58222 * 186.60213 * 26 17 16 53 53 H 1.08998 * 109.58908 * 66.18677 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.8312 -1.1878 6 6 4.0750 -1.5519 -2.4373 7 6 5.5999 -1.6612 -2.3762 8 6 6.1022 -2.3717 -3.6067 9 8 5.3178 -2.7535 -4.4491 10 7 7.4231 -2.5837 -3.7702 11 6 7.9115 -3.2739 -4.9667 12 6 9.4364 -3.3833 -4.9055 13 1 9.8672 -2.3911 -4.7712 14 6 9.9572 -3.9952 -6.2080 15 6 11.4848 -4.0747 -6.1612 16 6 11.9097 -4.9778 -4.9990 17 7 11.2932 -4.4785 -3.7623 18 6 12.0605 -4.2043 -2.6617 19 1 11.7413 -3.4530 -1.9545 20 6 13.2484 -4.8920 -2.4549 21 7 13.4811 -6.0135 -3.1033 22 14 14.5168 -4.2257 -1.2563 23 1 13.9163 -4.1317 0.0986 24 1 15.6879 -5.1380 -1.2170 25 1 14.9551 -2.8773 -1.6982 26 6 9.8381 -4.2786 -3.7292 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6055 -1.7199 -1.2950 35 1 1.7517 -0.1584 -2.1369 36 1 3.9996 0.1674 -1.1419 37 1 3.8532 -1.3940 -0.3001 38 1 3.6404 -2.5505 -2.4836 39 1 3.7866 -0.9887 -3.3248 40 1 6.0342 -0.6625 -2.3301 41 1 5.8886 -2.2242 -1.4886 42 1 8.0505 -2.2787 -3.0962 43 1 7.4769 -4.2724 -5.0129 44 1 7.6233 -2.7107 -5.8541 45 1 9.5449 -4.9968 -6.3290 46 1 9.6516 -3.3729 -7.0491 47 1 11.8968 -3.0762 -6.0154 48 1 11.8565 -4.4888 -7.0984 49 1 12.9951 -4.9592 -4.8996 50 1 11.5774 -5.9988 -5.1865 51 1 14.3110 -6.4942 -2.9586 52 1 9.5565 -3.7986 -2.7919 53 1 9.3349 -5.2417 -3.8144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412116527.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:21 Heat of formation + Delta-G solvation = -85.924752 kcal Electronic energy + Delta-G solvation = -25649.397215 eV Core-core repulsion = 22132.761885 eV Total energy + Delta-G solvation = -3516.635330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83871 -39.37235 -38.07022 -36.25613 -34.86213 -34.63870 -32.30308 -32.03769 -30.28643 -27.98243 -27.29124 -26.98198 -25.13014 -23.81450 -22.61107 -22.01641 -21.34458 -20.78944 -20.44935 -18.68152 -17.83881 -17.07436 -16.87041 -16.77383 -16.32716 -15.88067 -15.58455 -15.21916 -15.10206 -15.01420 -14.77786 -14.51737 -14.22424 -14.02034 -13.78632 -13.69476 -13.29438 -13.25691 -13.02372 -13.01039 -12.83720 -12.56090 -12.46248 -12.30952 -12.28242 -12.14929 -11.97789 -11.82245 -11.64530 -11.58151 -11.43788 -11.34253 -11.32549 -11.21096 -11.10237 -10.73827 -10.51737 -10.02587 -8.66907 -7.85811 -5.31974 1.47985 1.50583 1.56953 1.70908 2.30768 2.52012 3.28895 3.60404 3.76140 3.87835 3.99330 4.00002 4.01868 4.06574 4.11970 4.18669 4.30005 4.40628 4.53939 4.56457 4.58987 4.64497 4.74589 4.76680 4.81601 4.86305 4.88367 4.88811 4.92641 4.96332 4.99721 5.01879 5.09509 5.10497 5.17268 5.21727 5.24359 5.33424 5.35495 5.37420 5.39973 5.44936 5.52636 5.57933 5.59921 5.60612 5.67400 5.78543 6.39828 6.61401 7.15697 7.30531 7.87101 8.39576 9.20366 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002197 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.643380 B =12740.107810 C =14062.989582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.099 4.099 7 C -0.135 4.135 8 C 0.505 3.495 9 O -0.591 6.591 10 N -0.722 5.722 11 C 0.137 3.863 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.153 3.847 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.412 0.588 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.051 0.949 50 H -0.009 1.009 51 H 0.249 0.751 52 H 0.059 0.941 53 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.843 13.942 3.022 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.137 4.137 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.373 5.373 11 C 0.012 3.988 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.225 1.225 25 H -0.203 1.203 26 C 0.027 3.973 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.249 0.751 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.009 0.991 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -20.249 13.562 2.453 24.495 hybrid contribution 1.276 -0.340 0.695 1.492 sum -18.974 13.222 3.148 23.339 Atomic orbital electron populations 1.21852 0.95225 1.01679 1.01837 1.21136 0.95781 0.96632 0.98118 1.21895 1.01439 0.95621 1.01672 1.21634 0.95488 1.00223 0.97879 1.21625 0.95510 1.01032 0.97026 1.21281 0.93051 1.00746 0.98664 1.21754 0.97770 1.02735 0.95208 1.21419 0.81733 0.78751 0.88698 1.90662 1.56381 1.53553 1.46615 1.46113 1.07814 1.59228 1.24175 1.21216 0.93034 0.96609 0.87902 1.21708 0.93034 1.00274 0.96951 0.90423 1.21343 0.95124 1.00607 0.96528 1.21997 0.96320 1.00166 0.98408 1.20624 0.97573 0.92495 0.84600 1.44298 1.01890 1.77112 1.09906 1.19511 1.02836 1.14436 1.02330 0.91040 1.25841 1.02435 0.95571 1.01082 1.70191 1.25443 1.15701 1.46957 0.85340 0.78466 0.77443 0.79185 1.19925 1.22458 1.20308 1.21020 0.84044 0.95563 0.96662 0.92851 0.92331 0.92868 0.91222 0.92934 0.92577 0.92096 0.92577 0.92393 0.90677 0.91298 0.93102 0.92687 0.86538 0.87120 0.75136 0.92994 0.91356 0.92840 0.90269 0.92747 0.91320 0.93042 0.99062 0.94233 0.92258 0.97886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.19 71.98 0.66 -0.99 16 2 C -0.10 -1.15 2.92 -10.79 -0.03 -1.19 16 3 C -0.15 -1.60 8.95 71.98 0.64 -0.96 16 4 C -0.11 -1.54 4.68 30.59 0.14 -1.40 16 5 C -0.11 -1.50 4.97 30.60 0.15 -1.35 16 6 C -0.10 -1.77 4.50 30.59 0.14 -1.63 16 7 C -0.14 -2.26 5.70 29.85 0.17 -2.09 16 8 C 0.51 12.81 7.83 87.66 0.69 13.50 16 9 O -0.59 -19.97 15.98 -3.02 -0.05 -20.02 16 10 N -0.72 -17.45 5.33 -463.05 -2.47 -19.92 16 11 C 0.14 3.76 5.07 86.38 0.44 4.20 16 12 C -0.10 -3.05 2.38 -10.72 -0.03 -3.07 16 13 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.10 -3.01 5.17 30.62 0.16 -2.85 16 15 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 16 C 0.17 8.28 5.30 86.36 0.46 8.74 16 17 N -0.61 -29.73 2.99 -699.11 -2.09 -31.82 16 18 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 21 N -0.94 -55.32 11.20 21.65 0.24 -55.08 16 22 Si 0.97 43.99 29.59 68.60 2.03 46.02 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.15 5.98 5.60 86.36 0.48 6.46 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.62 6.57 -2.39 -0.02 0.61 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.85 6.57 -2.39 -0.02 0.83 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.41 8.48 7.70 -92.71 -0.71 7.77 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.05 2.80 6.06 -2.38 -0.01 2.79 16 50 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 51 H 0.25 14.30 8.31 -92.72 -0.77 13.53 16 52 H 0.06 2.17 7.13 -2.39 -0.02 2.15 16 53 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -67.18 408.50 3.27 -63.90 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.12 Total: 19.73 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.49 Total: -2.82 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.32 Total: -106.82 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.18 3.27 -63.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412116527.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.020 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds