Wall clock time and date at job start Fri Apr 10 2020 22:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.53003 * 109.47183 * 120.00558 * 2 1 3 5 5 C 1.53003 * 109.47209 * 64.99859 * 4 2 1 6 6 C 1.53001 * 109.46728 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46977 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47233 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99861 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00191 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00240 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47515 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.52356 * 54.91326 * 12 11 10 14 14 C 1.53037 * 109.50301 * 174.99942 * 12 11 10 15 15 C 1.53041 * 109.53035 * 181.32162 * 14 12 11 16 16 C 1.53193 * 109.31156 * 298.61690 * 15 14 12 17 17 N 1.46928 * 108.76651 * 54.65209 * 16 15 14 18 18 C 1.36937 * 120.62706 * 126.35770 * 17 16 15 19 19 H 1.07999 * 120.00511 * 331.86540 * 18 17 16 20 20 C 1.38820 * 119.99588 * 151.85904 * 18 17 16 21 21 N 1.31615 * 119.99827 * 343.07737 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 163.07532 * 20 18 17 23 23 H 1.48499 * 109.47331 * 60.00031 * 22 20 18 24 24 H 1.48500 * 109.46947 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47173 * 299.99718 * 22 20 18 26 26 C 1.46927 * 118.73976 * 306.38362 * 17 16 15 27 27 H 1.09000 * 109.46984 * 299.99726 * 1 2 3 28 28 H 1.08995 * 109.47502 * 59.99944 * 1 2 3 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46984 * 240.00274 * 2 1 3 31 31 H 1.09003 * 109.47452 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47576 * 300.00196 * 3 2 1 33 33 H 1.09000 * 109.46868 * 60.00204 * 3 2 1 34 34 H 1.08999 * 109.47135 * 304.99611 * 4 2 1 35 35 H 1.09004 * 109.46883 * 184.99637 * 4 2 1 36 36 H 1.09001 * 109.47036 * 60.00328 * 5 4 2 37 37 H 1.08994 * 109.46983 * 299.99585 * 5 4 2 38 38 H 1.09001 * 109.46917 * 60.00472 * 6 5 4 39 39 H 1.08992 * 109.47579 * 300.00049 * 6 5 4 40 40 H 1.08999 * 109.46917 * 60.00121 * 7 6 5 41 41 H 1.09002 * 109.47273 * 300.00655 * 7 6 5 42 42 H 0.97000 * 119.99501 * 359.97438 * 10 8 7 43 43 H 1.08999 * 109.47269 * 59.99693 * 11 10 8 44 44 H 1.09002 * 109.47277 * 300.00008 * 11 10 8 45 45 H 1.08999 * 109.46039 * 301.34057 * 14 12 11 46 46 H 1.09000 * 109.45793 * 61.30992 * 14 12 11 47 47 H 1.09001 * 109.49632 * 58.57969 * 15 14 12 48 48 H 1.08998 * 109.49950 * 178.67915 * 15 14 12 49 49 H 1.09003 * 109.59748 * 294.86300 * 16 15 14 50 50 H 1.09003 * 109.70030 * 174.50379 * 16 15 14 51 51 H 0.97000 * 119.99811 * 180.02562 * 21 20 18 52 52 H 1.08991 * 109.58471 * 293.82279 * 26 17 16 53 53 H 1.09001 * 109.70301 * 173.46227 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6352 -2.1956 1.1878 6 6 2.1458 -2.9170 2.4367 7 6 1.7405 -4.3911 2.3757 8 6 2.2428 -5.1016 3.6061 9 8 2.8643 -4.4893 4.4486 10 7 2.0024 -6.4176 3.7698 11 6 2.4913 -7.1084 4.9655 12 6 2.0859 -8.5824 4.9046 13 1 2.4430 -9.0202 3.9725 14 6 2.7012 -9.3309 6.0892 15 6 2.3233 -10.8118 6.0108 16 6 0.7997 -10.9507 6.0901 17 7 0.1939 -10.1173 5.0426 18 6 -0.6943 -10.6551 4.1498 19 1 -0.6330 -11.7018 3.8910 20 6 -1.6735 -9.8547 3.5774 21 7 -1.9711 -8.6917 4.1168 22 14 -2.5686 -10.4285 2.0416 23 1 -3.2703 -11.7061 2.3257 24 1 -3.5584 -9.4000 1.6322 25 1 -1.5884 -10.6353 0.9454 26 6 0.5596 -8.6960 4.9711 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 1.6054 -0.2619 2.1370 35 1 3.1263 -0.6445 1.2950 36 1 2.0698 -2.6551 0.3001 37 1 0.5489 -2.2725 1.1420 38 1 1.7115 -2.4577 3.3247 39 1 3.2320 -2.8401 2.4822 40 1 2.1744 -4.8507 1.4877 41 1 0.6541 -4.4677 2.3304 42 1 1.5057 -6.9073 3.0957 43 1 2.0571 -6.6489 5.8535 44 1 3.5776 -7.0315 5.0110 45 1 3.7861 -9.2308 6.0580 46 1 2.3242 -8.9088 7.0208 47 1 2.6782 -11.2284 5.0681 48 1 2.7810 -11.3486 6.8416 49 1 0.4526 -10.6179 7.0683 50 1 0.5173 -11.9924 5.9372 51 1 -2.6556 -8.1326 3.7171 52 1 0.1930 -8.1794 5.8579 53 1 0.1207 -8.2481 4.0795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412116531.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:26 Heat of formation + Delta-G solvation = -70.247248 kcal Electronic energy + Delta-G solvation = -26067.949795 eV Core-core repulsion = 22551.994293 eV Total energy + Delta-G solvation = -3515.955502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.52523 -37.83092 -37.33709 -34.66655 -33.96627 -33.06115 -31.01651 -29.93303 -29.35007 -27.41663 -25.85966 -25.30013 -24.11055 -22.17573 -21.35747 -20.74100 -20.27927 -19.87146 -18.97732 -16.91902 -16.52602 -16.10141 -15.59623 -15.34604 -14.97650 -14.51726 -14.42106 -14.12432 -13.78140 -13.70561 -13.57875 -13.13583 -12.90832 -12.75123 -12.53025 -12.45269 -12.29697 -12.17806 -12.05243 -11.84140 -11.57360 -11.34039 -11.23016 -11.03077 -10.88938 -10.80238 -10.74376 -10.62319 -10.51634 -10.48645 -10.26953 -10.18498 -9.94572 -9.72194 -9.47290 -9.41202 -8.67320 -8.51184 -6.70074 -5.83131 -3.25818 2.94846 3.33721 3.39980 3.41072 3.54387 4.44863 4.50631 4.64655 4.69420 4.92306 4.97572 5.07092 5.17210 5.27930 5.31478 5.34194 5.40543 5.46328 5.53410 5.55161 5.58198 5.58586 5.61006 5.63547 5.71452 5.77665 5.80333 5.82507 5.91038 5.97042 6.01806 6.07266 6.12159 6.15104 6.28000 6.29246 6.29859 6.35517 6.41733 6.49023 6.64952 6.76228 6.84151 6.85330 6.99931 7.29074 7.58634 7.74733 7.86744 8.40216 8.54439 9.16916 9.80200 10.38037 11.24749 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002764 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.521336 B =10127.600348 C =11957.910986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.102 4.102 7 C -0.143 4.143 8 C 0.510 3.490 9 O -0.555 6.555 10 N -0.721 5.721 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.069 0.931 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.179 3.821 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.405 0.595 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.017 0.983 50 H 0.052 0.948 51 H 0.254 0.746 52 H 0.018 0.982 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 12.418 -6.171 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.140 4.140 7 C -0.183 4.183 8 C 0.297 3.703 9 O -0.433 6.433 10 N -0.372 5.372 11 C 0.007 3.993 12 C -0.148 4.148 13 H 0.087 0.913 14 C -0.138 4.138 15 C -0.172 4.172 16 C 0.017 3.983 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.053 3.947 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.240 0.760 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.035 0.965 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.036 0.964 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.731 12.948 -5.607 16.593 hybrid contribution -0.816 -0.578 -1.074 1.467 sum 7.915 12.370 -6.681 16.134 Atomic orbital electron populations 1.21903 0.95292 1.02053 1.01500 1.21136 0.95955 0.96016 0.98582 1.21848 1.00856 0.96222 1.01592 1.21649 1.00796 0.95163 0.97624 1.21684 1.01320 0.95006 0.97962 1.21319 1.01669 0.92811 0.98165 1.21699 1.03123 0.96823 0.96629 1.20683 0.79491 0.82049 0.88115 1.90658 1.41467 1.66217 1.44992 1.46100 1.57237 1.09528 1.24341 1.21357 0.97991 0.92532 0.87467 1.22139 1.01654 0.92120 0.98912 0.91296 1.21335 0.98513 0.96016 0.97983 1.21989 0.99142 0.95533 1.00539 1.20935 0.90427 0.95264 0.91709 1.44029 1.49136 1.05857 1.32440 1.19157 1.06757 0.95317 1.16959 0.91768 1.25046 0.96720 0.97802 1.00095 1.70033 1.32858 1.12521 1.39201 0.86397 0.79206 0.77839 0.83492 1.20901 1.21615 1.21055 1.20794 0.87071 0.85415 1.01394 0.92739 0.93056 0.92227 0.91372 0.92813 0.92925 0.92750 0.91902 0.92033 0.92073 0.91602 0.91308 0.91483 0.89184 0.88760 0.75975 0.91895 0.92536 0.93451 0.92503 0.92446 0.93084 0.96518 0.92919 0.93604 0.96395 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.95 37.15 0.33 -0.82 16 2 C -0.10 -0.76 2.92 -90.63 -0.26 -1.02 16 3 C -0.15 -1.04 9.19 37.15 0.34 -0.70 16 4 C -0.11 -0.98 4.68 -26.73 -0.13 -1.11 16 5 C -0.12 -1.12 4.97 -26.73 -0.13 -1.25 16 6 C -0.10 -1.15 4.50 -26.73 -0.12 -1.27 16 7 C -0.14 -1.70 5.70 -27.88 -0.16 -1.86 16 8 C 0.51 8.08 7.83 -10.99 -0.09 7.99 16 9 O -0.55 -10.57 15.98 5.55 0.09 -10.48 16 10 N -0.72 -11.47 5.33 -60.30 -0.32 -11.79 16 11 C 0.13 2.19 5.07 -4.05 -0.02 2.17 16 12 C -0.13 -2.29 2.37 -90.50 -0.21 -2.50 16 13 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 14 C -0.10 -1.65 5.17 -26.69 -0.14 -1.79 16 15 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 16 C 0.14 2.95 6.52 -3.71 -0.02 2.93 16 17 N -0.59 -14.38 2.99 -172.31 -0.52 -14.90 16 18 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 19 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.11 11.19 55.49 0.62 -24.48 16 22 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.18 4.04 4.39 -3.71 -0.02 4.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.41 6.19 7.71 -40.82 -0.31 5.88 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 51 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 52 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 53 H 0.09 2.13 5.27 -51.93 -0.27 1.86 16 LS Contribution 408.52 15.07 6.16 6.16 Total: -1.00 -29.83 408.52 -10.55 -40.37 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -10.53 Total: 3.78 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.02 Total: -4.52 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.22 Total: -51.17 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.83 -10.55 -40.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412116531.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.875 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds