Wall clock time and date at job start Fri Apr 10 2020 22:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.53003 * 109.47183 * 120.00558 * 2 1 3 5 5 C 1.53003 * 109.47209 * 64.99859 * 4 2 1 6 6 C 1.53001 * 109.46728 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46977 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47233 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99861 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00191 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00240 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47515 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.52356 * 54.91326 * 12 11 10 14 14 C 1.53037 * 109.50301 * 174.99942 * 12 11 10 15 15 C 1.53041 * 109.53035 * 181.32162 * 14 12 11 16 16 C 1.53193 * 109.31156 * 298.61690 * 15 14 12 17 17 N 1.46928 * 108.76651 * 54.65209 * 16 15 14 18 18 C 1.36937 * 120.62706 * 126.35770 * 17 16 15 19 19 H 1.07999 * 120.00511 * 331.86540 * 18 17 16 20 20 C 1.38820 * 119.99588 * 151.85904 * 18 17 16 21 21 N 1.31615 * 119.99827 * 343.07737 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 163.07532 * 20 18 17 23 23 H 1.48499 * 109.47331 * 60.00031 * 22 20 18 24 24 H 1.48500 * 109.46947 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47173 * 299.99718 * 22 20 18 26 26 C 1.46927 * 118.73976 * 306.38362 * 17 16 15 27 27 H 1.09000 * 109.46984 * 299.99726 * 1 2 3 28 28 H 1.08995 * 109.47502 * 59.99944 * 1 2 3 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46984 * 240.00274 * 2 1 3 31 31 H 1.09003 * 109.47452 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47576 * 300.00196 * 3 2 1 33 33 H 1.09000 * 109.46868 * 60.00204 * 3 2 1 34 34 H 1.08999 * 109.47135 * 304.99611 * 4 2 1 35 35 H 1.09004 * 109.46883 * 184.99637 * 4 2 1 36 36 H 1.09001 * 109.47036 * 60.00328 * 5 4 2 37 37 H 1.08994 * 109.46983 * 299.99585 * 5 4 2 38 38 H 1.09001 * 109.46917 * 60.00472 * 6 5 4 39 39 H 1.08992 * 109.47579 * 300.00049 * 6 5 4 40 40 H 1.08999 * 109.46917 * 60.00121 * 7 6 5 41 41 H 1.09002 * 109.47273 * 300.00655 * 7 6 5 42 42 H 0.97000 * 119.99501 * 359.97438 * 10 8 7 43 43 H 1.08999 * 109.47269 * 59.99693 * 11 10 8 44 44 H 1.09002 * 109.47277 * 300.00008 * 11 10 8 45 45 H 1.08999 * 109.46039 * 301.34057 * 14 12 11 46 46 H 1.09000 * 109.45793 * 61.30992 * 14 12 11 47 47 H 1.09001 * 109.49632 * 58.57969 * 15 14 12 48 48 H 1.08998 * 109.49950 * 178.67915 * 15 14 12 49 49 H 1.09003 * 109.59748 * 294.86300 * 16 15 14 50 50 H 1.09003 * 109.70030 * 174.50379 * 16 15 14 51 51 H 0.97000 * 119.99811 * 180.02562 * 21 20 18 52 52 H 1.08991 * 109.58471 * 293.82279 * 26 17 16 53 53 H 1.09001 * 109.70301 * 173.46227 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6352 -2.1956 1.1878 6 6 2.1458 -2.9170 2.4367 7 6 1.7405 -4.3911 2.3757 8 6 2.2428 -5.1016 3.6061 9 8 2.8643 -4.4893 4.4486 10 7 2.0024 -6.4176 3.7698 11 6 2.4913 -7.1084 4.9655 12 6 2.0859 -8.5824 4.9046 13 1 2.4430 -9.0202 3.9725 14 6 2.7012 -9.3309 6.0892 15 6 2.3233 -10.8118 6.0108 16 6 0.7997 -10.9507 6.0901 17 7 0.1939 -10.1173 5.0426 18 6 -0.6943 -10.6551 4.1498 19 1 -0.6330 -11.7018 3.8910 20 6 -1.6735 -9.8547 3.5774 21 7 -1.9711 -8.6917 4.1168 22 14 -2.5686 -10.4285 2.0416 23 1 -3.2703 -11.7061 2.3257 24 1 -3.5584 -9.4000 1.6322 25 1 -1.5884 -10.6353 0.9454 26 6 0.5596 -8.6960 4.9711 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 1.6054 -0.2619 2.1370 35 1 3.1263 -0.6445 1.2950 36 1 2.0698 -2.6551 0.3001 37 1 0.5489 -2.2725 1.1420 38 1 1.7115 -2.4577 3.3247 39 1 3.2320 -2.8401 2.4822 40 1 2.1744 -4.8507 1.4877 41 1 0.6541 -4.4677 2.3304 42 1 1.5057 -6.9073 3.0957 43 1 2.0571 -6.6489 5.8535 44 1 3.5776 -7.0315 5.0110 45 1 3.7861 -9.2308 6.0580 46 1 2.3242 -8.9088 7.0208 47 1 2.6782 -11.2284 5.0681 48 1 2.7810 -11.3486 6.8416 49 1 0.4526 -10.6179 7.0683 50 1 0.5173 -11.9924 5.9372 51 1 -2.6556 -8.1326 3.7171 52 1 0.1930 -8.1794 5.8579 53 1 0.1207 -8.2481 4.0795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412116531.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:25 Heat of formation + Delta-G solvation = -85.414171 kcal Electronic energy + Delta-G solvation = -26068.607482 eV Core-core repulsion = 22551.994293 eV Total energy + Delta-G solvation = -3516.613189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.83685 -39.35761 -38.08578 -36.14222 -34.88102 -34.78952 -32.58845 -31.59275 -30.32795 -27.99828 -27.34170 -26.98822 -25.15210 -23.85465 -22.50769 -22.00612 -21.34891 -20.79164 -20.44823 -18.72160 -17.87446 -17.09225 -16.92541 -16.81338 -16.19181 -15.80862 -15.60362 -15.22301 -15.07919 -14.97429 -14.84824 -14.52252 -14.22101 -14.03676 -13.78158 -13.76194 -13.31511 -13.28193 -13.04020 -12.90348 -12.84899 -12.58039 -12.49918 -12.30838 -12.24581 -12.17000 -11.99559 -11.79102 -11.66673 -11.55948 -11.45365 -11.34956 -11.30918 -11.23169 -11.09562 -10.74860 -10.52607 -10.01879 -8.65002 -7.84591 -5.30816 1.49955 1.50722 1.58236 1.68486 2.31956 2.53243 3.27705 3.61760 3.74337 3.85928 3.97536 4.00932 4.07803 4.09484 4.14422 4.16892 4.27928 4.35406 4.49652 4.53774 4.59583 4.65099 4.71579 4.79198 4.81490 4.84101 4.85560 4.88095 4.91171 4.95232 4.98404 5.03672 5.07755 5.15071 5.15578 5.20035 5.24329 5.32782 5.35686 5.36883 5.39279 5.43496 5.53135 5.56311 5.57959 5.58920 5.68281 5.78846 6.41142 6.58718 7.17208 7.27147 7.87861 8.40776 9.20648 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002764 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.521336 B =10127.600348 C =11957.910986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.096 4.096 7 C -0.136 4.136 8 C 0.506 3.494 9 O -0.590 6.590 10 N -0.721 5.721 11 C 0.138 3.862 12 C -0.111 4.111 13 H 0.071 0.929 14 C -0.100 4.100 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.265 4.265 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.931 5.931 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.189 3.811 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.409 0.591 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.008 0.992 50 H 0.052 0.948 51 H 0.250 0.750 52 H -0.016 1.016 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 12.055 -7.588 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.135 4.135 7 C -0.176 4.176 8 C 0.294 3.706 9 O -0.471 6.471 10 N -0.372 5.372 11 C 0.013 3.987 12 C -0.131 4.131 13 H 0.089 0.911 14 C -0.138 4.138 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.334 5.334 18 C -0.395 4.395 19 H 0.081 0.919 20 C -0.241 4.241 21 N -0.577 5.577 22 Si 0.793 3.207 23 H -0.208 1.208 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.063 3.937 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.244 0.756 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.026 0.974 50 H 0.070 0.930 51 H 0.059 0.941 52 H 0.002 0.998 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.924 12.561 -7.024 17.482 hybrid contribution -1.206 -0.503 -0.549 1.417 sum 8.718 12.058 -7.573 16.696 Atomic orbital electron populations 1.21909 0.95300 1.01934 1.01664 1.21125 0.95928 0.96360 0.98128 1.21844 1.01027 0.95793 1.01827 1.21633 1.00775 0.94863 0.97872 1.21629 1.01408 0.95124 0.97095 1.21266 1.01057 0.92563 0.98575 1.21748 1.03551 0.96776 0.95521 1.21372 0.78666 0.81758 0.88794 1.90638 1.43167 1.66810 1.46507 1.46148 1.57118 1.09836 1.24090 1.21224 0.98577 0.91583 0.87288 1.21899 0.98042 0.93229 0.99945 0.91065 1.21364 1.00294 0.95294 0.96811 1.21868 0.95954 0.96274 1.01917 1.21121 0.93054 0.94585 0.90273 1.44321 1.49284 1.06648 1.33161 1.19454 1.07141 0.95481 1.17430 0.91854 1.25747 0.97681 0.98032 1.02672 1.70190 1.33472 1.13585 1.40405 0.85394 0.77994 0.77045 0.80285 1.20782 1.21965 1.20043 1.20581 0.90062 0.84343 0.98687 0.93111 0.92390 0.92483 0.90976 0.92572 0.92244 0.92985 0.92649 0.92039 0.90908 0.91387 0.93164 0.92271 0.86620 0.87975 0.75569 0.93648 0.91113 0.90251 0.92898 0.92360 0.89913 0.97377 0.92991 0.94084 0.99802 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.95 71.98 0.64 -1.50 16 2 C -0.10 -1.37 2.92 -10.80 -0.03 -1.40 16 3 C -0.15 -1.89 9.19 71.98 0.66 -1.23 16 4 C -0.11 -1.84 4.68 30.60 0.14 -1.70 16 5 C -0.12 -1.95 4.97 30.60 0.15 -1.80 16 6 C -0.10 -2.13 4.50 30.59 0.14 -1.99 16 7 C -0.14 -3.11 5.70 29.85 0.17 -2.94 16 8 C 0.51 15.86 7.83 87.66 0.69 16.55 16 9 O -0.59 -22.62 15.98 -3.05 -0.05 -22.67 16 10 N -0.72 -22.71 5.33 -463.08 -2.47 -25.18 16 11 C 0.14 4.54 5.07 86.38 0.44 4.98 16 12 C -0.11 -3.88 2.37 -10.72 -0.03 -3.90 16 13 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 14 C -0.10 -3.06 5.17 30.62 0.16 -2.90 16 15 C -0.12 -3.83 6.08 30.67 0.19 -3.64 16 16 C 0.14 5.51 6.52 86.36 0.56 6.07 16 17 N -0.61 -29.89 2.99 -699.07 -2.09 -31.98 16 18 C -0.26 -14.16 9.58 84.04 0.81 -13.35 16 19 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 20 C -0.05 -2.45 4.92 84.86 0.42 -2.03 16 21 N -0.93 -52.88 11.19 21.65 0.24 -52.64 16 22 Si 0.96 43.03 29.59 68.60 2.03 45.06 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C 0.19 8.68 4.39 86.36 0.38 9.06 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.83 6.56 -2.38 -0.02 0.82 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.14 6.56 -2.39 -0.02 1.12 16 38 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 39 H 0.06 1.39 8.10 -2.39 -0.02 1.38 16 40 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.41 12.36 7.71 -92.71 -0.71 11.64 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 51 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 52 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 53 H 0.07 3.28 5.27 -2.39 -0.01 3.27 16 Total: -1.00 -64.77 408.52 3.27 -61.50 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.12 Total: 27.64 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 5.49 Total: -1.73 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.32 Total: -109.80 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.77 3.27 -61.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412116531.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.912 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds